#!/bin/bash

## Originated by Christopher Handelmann

# Define the config file here so the rest of the scripts can dynamically source it
HERE="$(cd "$(dirname "${BASH_SOURCE[0]:-$0}")" && pwd)"   # = …/01.scripts
cd "$HERE"                                                  # submit from 01.scripts
Config_file="$(dirname "$HERE")/00.setup/000.maniFasta.config"

export Config_file
# Source the config to set variables in this shell
source "${Config_file}"

# Set run variables
runScript=runBuild_db.sh

# Slurm log goes into the project direcotry alongside the run output dirs.
# %j is replaced by the job ID so logs from different runs don't collide.
LOG_DIR="${mainDIR}"

# Submit run script to slurm scheduler [choose cluster in config file]

sbatch \
  --cluster="$cluster" \
  --partition="$partition" \
  --qos="$qos" \
  --job-name="$build_JobName" \
  --nodes="$build_Nodes" \
  --cpus-per-task="$build_cpuspertask" \
  --mem="$build_mem" \
  --time="$build_Time" \
  --output="${LOG_DIR}/slurm-%j.out" \
  --error="${LOG_DIR}/slurm-%j.out" \
  "$runScript"