species taxid accession fetch_source note Alphacoronavirus 1 693997 ncbi Alphapapillomavirus 10 333754 ncbi Alphapapillomavirus 14 931244 ncbi Alphapapillomavirus 2 337039 ncbi Alphapapillomavirus 4 337043 ncbi Alphapapillomavirus 9 337041 ncbi Alphapolyomavirus octihominis 1891727 ncbi Alphapolyomavirus quintihominis 1891726 ncbi Anellovirus cya/2019 2749445 MT501646 ncbi Anellovirus cyb/2019 2749446 MT501649 ncbi Anellovirus cyc/2019 2749447 MT501653 ncbi Astrovirus MLB3 1247114 ncbi Avian coronavirus 694014 ncbi Betacoronavirus 694002 ncbi Betacoronavirus 1 694003 ncbi Betapapillomavirus 1 337051 ncbi Betapapillomavirus 2 333924 ncbi Betapapillomavirus 3 334207 ncbi Betapapillomavirus 4 334208 ncbi Betapolyomavirus hominis 1891762 ncbi Betapolyomavirus quartihominis 1891765 ncbi Betapolyomavirus secuhominis 1891763 ncbi Betapolyomavirus tertihominis 1891764 ncbi Bocaparvovirus primate1 3052040 ncbi Bocaparvovirus primate2 3052041 ncbi Brisavirus 2732654 ncbi Cardiovirus A 1821749 ncbi Cardiovirus B 1821750 ncbi Cardiovirus D 2734523 ncbi Chikungunya virus 37124 ncbi Circoviridae sp. 1954248 ncbi Coronavirus cya-BetaCoV/2019 2749448 ncbi Coronavirus cyb-BetaCoV/2019 2749449 ncbi Coronavirus cyc-BetaCoV/2019 2749450 ncbi Cowpox virus 10243 ncbi Coxsackievirus A 138948 ncbi Enterovirus 71 39054 HQ400942 ncbi Cyclovirus sp. 1983780 ncbi Cytomegalovirus humanbeta5 3050295 ncbi Deltapolyomavirus decihominis 1208309 ncbi Deltapolyomavirus undecihominis 1891745 ncbi Dengue virus 12637 ncbi Dependoparvovirus primate1 1511891 ncbi Ebola virus 1570291 ncbi Enterovirus A 138948 ncbi Enterovirus B 138949 ncbi Enterovirus C 138950 ncbi Enterovirus D 138951 ncbi Enterovirus sp. 47681 ncbi Enteroviruses 12059 ncbi Epstein-Barr virus 10376 NC_007605 ncbi Erythroparvovirus primate1 3052189 ncbi Gammapapillomavirus 1 333926 ncbi Gammapapillomavirus 11 1513256 ncbi Gammapapillomavirus 12 1513257 ncbi Gammapapillomavirus 22 1961679 ncbi Gammapapillomavirus 24 1961681 ncbi Gammapapillomavirus 3 333929 ncbi Gemycircularvirus CN-GZ1 2583509 MH427642 ncbi Gemycircularvirus HV-GcV1 1862824 ncbi Gemycircularvirus sp. 1983771 ncbi Haseki tick virus 2712269 MW808978 ncbi Hendra henipavirus 3052223 ncbi Henipavirus nipahense 3052225 ncbi Hepatitis A virus 12092 NC_001489 ncbi Hepatitis B virus 10407 ncbi Hepatitis C virus 3052230 ncbi Herpes simplex virus 1 10298 ncbi Herpes simplex virus 2 10310 ncbi Human adenovirus sp. 1907210 ncbi Human alphaherpesvirus 1 10298 ncbi Human alphaherpesvirus 2 10310 ncbi Human alphaherpesvirus 3 10335 ncbi Human associated cyclovirus 10 2038728 ncbi Human betaherpesvirus 5 10359 ncbi Human betaherpesvirus 6 10368 KY315532 ncbi Human betaherpesvirus 6A 32603 ncbi Human betaherpesvirus 6B 32604 ncbi Human betaherpesvirus 7 10372 ncbi Human bocavirus 329641 NC_007455 ncbi Human coronavirus 694448 NC_002645 ncbi Human coronavirus 229E 11137 ncbi Human coronavirus HKU1 290028 ncbi Human coronavirus KUMC22-3 3161185 PP868300 ncbi Human coronavirus NL63 277944 ncbi Human cytomegalovirus 10359 NC_001347 ncbi Human enterovirus 1193974 MH933845 ncbi human gammaherpesvirus 4 10376 ncbi Human gammaherpesvirus 8 37296 ncbi Human herpesvirus 1 10298 NC_001806 ncbi Human herpesvirus 6 10368 NC_001664 ncbi Human herpesvirus 7 10372 NC_001716 ncbi Human herpesvirus 8 37296 NC_009333 ncbi Human immunodeficiency virus 12721 ncbi Human immunodeficiency virus 1 11676 ncbi Human mastadenovirus A 129875 ncbi Human mastadenovirus B 108098 ncbi Human mastadenovirus C 129951 ncbi Human mastadenovirus D 130310 ncbi Human mastadenovirus E 130308 ncbi Human mastadenovirus F 130309 ncbi Human metapneumovirus 162145 NC_004148 ncbi Human orthopneumovirus 11250 ncbi Human orthorubulavirus 2 2560525 ncbi Human orthorubulavirus 4 2560526 ncbi Human papillomavirus 10566 NC_001526 ncbi Human parechovirus 1B 3092269 OR728261 ncbi Human parvovirus B19 10798 NC_000883 ncbi Human picobirnavirus 145856 ncbi Human polyomavirus 6 746830 ncbi Human polyomavirus 9 943908 ncbi Human PoSCV5-like circular virus 1965018 ncbi Human respiratory circovirus-like 1 2714898 MK674279 ncbi Human respiratory circovirus-like 2 2714899 MK674280 ncbi Human respiratory circular DNA virus 2057509 MN535745 ncbi human respiratory syncytial virus 11250 ncbi Human respirovirus 1 12730 ncbi Human respirovirus 3 11216 ncbi Human rhinovirus A, B, C (HRV) ECDC 147711 NC_001617 ncbi Human rhinovirus sp. 169066 X01087 ncbi Influenza A virus 11320 ncbi Influenza B virus 11520 ncbi Influenza C virus 11552 GCF_000856665 ncbi JC polyomavirus 10632 NC_001699 ncbi KI Polyomavirus 1891764 NC_009238 ncbi Lymphocryptovirus humangamma4 3050299 ncbi Lyssavirus rabies 11292 ncbi Mammarenavirus choriomeningitidis 3052303 ncbi Mammarenavirus lassaense 3052310 ncbi Mastadenovirus sp. 2050578 ncbi Measles morbillivirus 11234 ncbi Merkel cell polyomavirus 493803 NC_010277 ncbi MERS coronavirus 1335626 NC_019843 ncbi Metapneumovirus hominis 3048148 ncbi Middle East respiratory syndrome-related coronavirus 1335626 ncbi Monkeypox virus 10244 ncbi Morbillivirus hominis 3052345 ncbi Mumps orthorubulavirus 2560602 ncbi Nipah virus 3052225 NC_002728 ncbi Norovirus 142786 ncbi Norwalk virus 11983 ncbi Orthoflavivirus nilense 3048448 ncbi Orthohantavirus puumalaense 3052493 ncbi Orthomarburgvirus marburgense 3052505 ncbi Orthopicobirnavirus hominis 2956252 ncbi Orthopneumovirus hominis 3049954 ncbi Parechovirus A 1803956 ncbi Pegivirus hominis 3052608 ncbi Poliovirus 138950 NC_002058 ncbi Polyomavirus 36362 ncbi Primate T-lymphotropic virus 1 194440 ncbi Protoparvovirus sp. 1987106 PQ310103 ncbi human oral isolate sequence human respiratory syncytial virus 11250 NC_001781 ncbi Respirovirus laryngotracheitidis 3049952 ncbi Respirovirus pneumoniae 3049953 ncbi Rhinovirus A 147711 ncbi Rhinovirus B 147712 ncbi Rhinovirus C 463676 ncbi Roseolovirus humanbeta7 3050298 ncbi Rotavirus A 28875 ncbi Rubella virus 11041 NC_001545 ncbi Salivirus A 1330524 ncbi Severe acute respiratory syndrome coronavirus 2901879 ncbi Simian foamy virus 11642 ncbi Simplexvirus humanalpha1 3050292 ncbi Small anellovirus 393049 ncbi Variola virus 10255 NC_001611 ncbi St. Louis encephalitis virus 11080 ncbi Statovirus sp. 2747383 OR367719 ncbi Tetraparvovirus primate1 3052770 ncbi Torque teno midi virus 432261 MN165095 ncbi Torque teno mini virus 93678 ncbi Torque teno mini virus ALA22 1535290 ncbi Torque teno mini virus ALH8 1535291 ncbi Torque teno virus 68887 ncbi Torque teno virus 13 687352 ncbi Torque teno virus 16 687355 ncbi Torque teno virus 24 687363 ncbi Torque teno virus 5 687344 ncbi TTV-like mini virus 93678 ncbi Vaccinia virus 10245 ncbi Varicella-zoster virus 10335 NC_001348 ncbi Varicellovirus humanalpha3 3050294 ncbi Vesiculovirus chandipura 1972576 ncbi Vientovirus 2732655 ncbi Cytomegalovirus 10358 ncbi Zaire ebolavirus 186538 ncbi Zika virus 64320 ncbi