[INFO] [09:36:31] Run timestamp : 20260803_093631 [INFO] [09:36:31] Build output directory : /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S [INFO] [09:36:31] Run reference data dir : /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/run_data [INFO] [09:36:31] Run temp directory : /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/tmp [INFO] [09:36:31] allow_missing_accessions=true: unreturned accessions will be skipped and reported. [INFO] [09:36:31] UniParc organism-pick policy: best [INFO] [09:36:31] UniProt proteome-type policy: best [INFO] [09:36:31] UniProt taxon inclusion: trembl=false isoform=false ============================================================ [09:36:31] PHASE 0: Initialize run and parse source registry ============================================================ [INFO] [09:36:31] Source registry detected: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/00.setup/000.maniFasta.source_registry.tsv [INFO] Source registry rows: 20 total, 12 enabled [INFO] Main directory: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev [INFO] Legacy path base: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/00.setup [INFO] Normalized source plan: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/tmp/source_plan.normalized.tsv [INFO] Enabled source plan: [INFO] FUNGI: label=FUNGI | group=fungi | module=mod_I | detail=/projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/99.prepackaged_inputs/MOD-I.AllOralsDB.fungi.v2026.198.tsv | source_dir=99.prepackaged_inputs | input_list=/projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/99.prepackaged_inputs/MOD-I.AllOralsDB.fungi.v2026.198.tsv | notes=Fungi detected in the oral samples. [INFO] MICROEUK_ENTAMOEBA: label=ENTAMOEBA | group=microeuks | module=mod_I | detail=/projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/99.prepackaged_inputs/MOD-I.AllOralsDB.entamoeba.v2026.198.tsv | source_dir=99.prepackaged_inputs | input_list=/projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/99.prepackaged_inputs/MOD-I.AllOralsDB.entamoeba.v2026.198.tsv | notes=Proxy for Entamoeba gingivalis; E. gingivalis genome unavailable in NCBI therefore include genomes of other Entamoeba species. [INFO] VIRUSES_HUMAN: label=VIRUSES_HUMAN | group=viruses | module=mod_I | detail=/projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/99.prepackaged_inputs/MOD-I.AllOralsDB.viruses_humans.v2026.198.tsv | source_dir=99.prepackaged_inputs | input_list=/projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/99.prepackaged_inputs/MOD-I.AllOralsDB.viruses_humans.v2026.198.tsv | notes=Viruses that infect humans and have been detected in oral samples (sources include data from https://viralzone.expasy.org/ and the Human Virus Database http://computationalbiology.cn/humanVirusBase/). [INFO] VIRUSES_FUNGAL_MICROEUK: label=VIRUSES_FUNGAL_MICROEUK | group=viruses | module=mod_I | detail=/projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/99.prepackaged_inputs/MOD-I.AllOralsDB.viruses_microeuks.v2026.198.tsv | source_dir=99.prepackaged_inputs | input_list=/projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/99.prepackaged_inputs/MOD-I.AllOralsDB.viruses_microeuks.v2026.198.tsv | notes=Viruses that infect fungi and other microeukaryotes (sources Kinsella et al. and Keeler et al.) [INFO] VIRUSES_DIETARY: label=VIRUSES_DIETARY | group=viruses | module=mod_I | detail=/projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/99.prepackaged_inputs/MOD-I.AllOralsDB.viruses_dietary.v2026.198.tsv | source_dir=99.prepackaged_inputs | input_list=/projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/99.prepackaged_inputs/MOD-I.AllOralsDB.viruses_dietary.v2026.198.tsv | notes=Viruses infecting plants and tobacco products, detected in oral samples (sources include Aguado-García et al., Rivera-Gutierrez 2023 et al., and literature survey). [INFO] VIRUSES_HERVS: label=VIRUSES_HERVS | group=viruses | module=mod_II | detail=/projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/99.prepackaged_inputs/MOD-II.AllOralsDB.viruses_HERVs.v2026.198.tsv | source_dir=99.prepackaged_inputs | options=lineage_taxid_override=206037 | input_list=/projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/99.prepackaged_inputs/MOD-II.AllOralsDB.viruses_HERVs.v2026.198.tsv | notes=Viruses that are endogenous in the human genome (HERVs). [INFO] MICROEUK_TTENAX: label=TTENAX | group=microeuks | module=mod_III | detail=/projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/99.prepackaged_inputs/MOD-III.Mpeyako2024.trichomonas.v2026.198.fasta | source_dir=99.prepackaged_inputs | version=Mpeyako_etal_2024 | fasta_file=/projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/99.prepackaged_inputs/MOD-III.Mpeyako2024.trichomonas.v2026.198.fasta | metadata_file=/projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/99.prepackaged_inputs/MOD-III.Mpeyako2024.trichomonas.v2026.198.tsv | notes=Proteins identified and provided by Mpeyako et al. as Suppl Table 2 and Suppl Data 3). [INFO] OBELISKS_ORAL: label=OBELISKS_ORAL | group=obelisks | module=mod_III | detail=/projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/99.prepackaged_inputs/MOD-III.Zheludev2024.obelisks_ORAL.v2026.215.fasta | source_dir=99.prepackaged_inputs | version=Zheludev_etal_2024 | fasta_file=/projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/99.prepackaged_inputs/MOD-III.Zheludev2024.obelisks_ORAL.v2026.215.fasta | metadata_file=/projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/99.prepackaged_inputs/MOD-III.Zheludev2024.obelisks_ORAL.v2026.198.tsv | notes=Subset of proteins from protein calls for Obelisk genomes identified by Zheludev (their Supp Table 2), filtered and reviewed to include only Obelisk proteins from oral/oral-proximal datasets (27 of 11,581 pyrodigal ORFs). [INFO] DAIRY_DB: label=DAIRY | group=food | module=mod_III | detail=/projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/99.prepackaged_inputs/MOD-III.Dairy_DB.SUBSET-151.fasta | source_dir=99.prepackaged_inputs | version=Hendy_2019 | fasta_file=/projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/99.prepackaged_inputs/MOD-III.Dairy_DB.SUBSET-151.fasta | metadata_file=/projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/99.prepackaged_inputs/MOD-III.Dairy_DB.SUBSET-151.tsv | notes=Proteins provided by Hendy et al. as curated dairy proteins, developed for their study of ancient dental calculus, Wilkin et al. 2020. [INFO] HUMAN_CI: label=HUMAN_CI | group=human | module=mod_IV | detail=human_uniprot | options=protein_set=canonical_isoform [INFO] HOMD_ORAL_S: label=HOMD_ORAL_S | group=bacteria_archaea | module=mod_IV | detail=HOMD | options=genomic_refseq_version=V11.03;sites=oral;download=true;rank=species | version=V11.03 | notes=HOMD PROKKA proteomes filtered to oral body site, only include 1 representative genome from each oral species. [INFO] CRAP_CCP: label=CRAP | group=contaminants | module=mod_IV | detail=cRAP | options=set=ccp | notes=Cambridge Centre for Proteomics cRAP set. [INFO] Source planner complete. [INFO] [09:36:31] Supported collection parsed: HUMAN_CI -> HUMAN protein_set=canonical_isoform download=True [INFO] [09:36:31] Supported collection parsed: HOMD_ORAL_S -> HOMD version=V11.03 sites=oral rank=species download=True [INFO] [09:36:31] Supported collection parsed: CRAP_CCP -> cRAP set=ccp [INFO] [09:36:31] Supported-collection env written: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/tmp/source_plan.supported_collections.env [INFO] [09:36:31] Supported-collection variables loaded from normalized source plan: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/tmp/source_plan.supported_collections.env ============================================================ [09:36:31] PHASE 1: Collect and stage source data ============================================================ ---- [09:36:31] Modules I–III: stage NCBI proteome lists, NCBI protein accessions, and user FASTAs ---- [INFO] [09:36:31] Reading normalized source plan: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/tmp/source_plan.normalized.tsv [INFO] [09:36:31] Queuing mod_I (proteome) for FUNGI: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/99.prepackaged_inputs/MOD-I.AllOralsDB.fungi.v2026.198.tsv [INFO] [09:36:31] Queuing mod_I (proteome) for ENTAMOEBA: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/99.prepackaged_inputs/MOD-I.AllOralsDB.entamoeba.v2026.198.tsv [INFO] [09:36:31] Queuing mod_I (proteome) for VIRUSES_HUMAN: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/99.prepackaged_inputs/MOD-I.AllOralsDB.viruses_humans.v2026.198.tsv [INFO] [09:36:31] Queuing mod_I (proteome) for VIRUSES_FUNGAL_MICROEUK: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/99.prepackaged_inputs/MOD-I.AllOralsDB.viruses_microeuks.v2026.198.tsv [INFO] [09:36:31] Queuing mod_I (proteome) for VIRUSES_DIETARY: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/99.prepackaged_inputs/MOD-I.AllOralsDB.viruses_dietary.v2026.198.tsv [INFO] [09:36:31] Queuing mod_II (protein accessions) for VIRUSES_HERVS: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/99.prepackaged_inputs/MOD-II.AllOralsDB.viruses_HERVs.v2026.198.tsv [INFO] [09:36:31] Appending user_fasta for TTENAX: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/99.prepackaged_inputs/MOD-III.Mpeyako2024.trichomonas.v2026.198.fasta [INFO] [09:36:31] Using supplied metadata for TTENAX: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/99.prepackaged_inputs/MOD-III.Mpeyako2024.trichomonas.v2026.198.tsv [INFO] [09:36:31] Appending user_fasta for OBELISKS_ORAL: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/99.prepackaged_inputs/MOD-III.Zheludev2024.obelisks_ORAL.v2026.215.fasta [INFO] [09:36:31] Using supplied metadata for OBELISKS_ORAL: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/99.prepackaged_inputs/MOD-III.Zheludev2024.obelisks_ORAL.v2026.198.tsv [INFO] [09:36:31] Appending user_fasta for DAIRY: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/99.prepackaged_inputs/MOD-III.Dairy_DB.SUBSET-151.fasta [INFO] [09:36:31] Using supplied metadata for DAIRY: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/99.prepackaged_inputs/MOD-III.Dairy_DB.SUBSET-151.tsv [INFO] [09:36:31] Supported collection will be handled later: HUMAN_CI (human_uniprot) [INFO] [09:36:31] Supported collection will be handled later: HOMD_ORAL_S (HOMD) [INFO] [09:36:31] Supported collection will be handled later: CRAP_CCP (cRAP) [INFO] [09:36:31] Source-plan staging complete: mod_I_rows=5, mod_II_rows=1, mod_III_rows=3, mod_IV_rows=3, fetch_records=274, protein_accessions=13, user_fasta_records=20464, metadata_rows=20464 [INFO] [09:36:31] Stage flags: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/tmp/source_plan_stage_flags.env [INFO] [09:36:31] Source-plan stage flags loaded from: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/tmp/source_plan_stage_flags.env [INFO] [09:36:31] Combined fetch list written: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/tmp/fetch_lists_combined/combined_fetch_list.tsv [INFO] partition: ncbi 274 [INFO] [09:36:31] Combined user-supplied FASTA written: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/tmp/fasta_override_combined/user_supplied_combined.fasta [INFO] [09:36:31] Protein accession list ready: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/tmp/prot_fetch_combined/combined_protein_accessions.tsv [INFO] partition: uniprot 10 [INFO] partition: uniparc 3 [INFO] [09:36:31] No NCBI-type accessions in combined protein list; skipping exact-ID efetch (any uniprot/uniparc/pdb per-row accessions are fetched below). [INFO] [09:36:32] No UniProt accession or taxon rows in plan; nothing to do. [INFO] [09:36:32] UniProt accession requests: 10 [INFO] [09:36:32] Fetched 10/10 [INFO] [09:36:33] UniProt fetch complete: 10 sequences (10 by accession, 0 by taxon; 0 accession(s) missing) [INFO] [09:36:33] FASTA: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/tmp/prot_fetch_combined/uniprot_proteins_fromlist.fasta [INFO] [09:36:33] Metadata: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/tmp/prot_fetch_combined/uniprot_proteins_fromlist.metadata.tsv [INFO] [09:36:33] Report: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/tmp/prot_fetch_combined/uniprot_proteins_fromlist.fetch_report.tsv [INFO] [09:36:33] No UniParc accession rows in plan; nothing to do. [INFO] [09:36:33] UniParc accession requests: 3 (organism-pick=best) [INFO] [09:36:35] Fetched 3/3 [INFO] [09:36:35] UniParc accession fetch complete: 3 sequences (0 missing) [INFO] [09:36:35] FASTA: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/tmp/prot_fetch_combined/uniparc_proteins_fromlist.fasta [INFO] [09:36:35] Metadata: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/tmp/prot_fetch_combined/uniparc_proteins_fromlist.metadata.tsv [INFO] [09:36:35] Report: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/tmp/prot_fetch_combined/uniparc_proteins_fromlist.fetch_report.tsv [INFO] [09:36:35] No PDB accession rows in plan; nothing to do. ---- [09:36:35] Module IV-A: supported collection — human UniProt proteins ---- [INFO] [09:36:35] Fetching human proteins from UniProt (canonical_isoform)... ==> Human protein set : canonical_isoform ==> Output file : /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/run_data/human/human_proteins.canonical_isoform.fasta ==> Compressed : false ==> Downloading FASTA to /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/run_data/human/human_proteins.canonical_isoform.fasta ... % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 1158k 0 1158k 0 0 840k 0 --:--:-- 0:00:01 --:--:-- 840k 100 2060k 0 2060k 0 0 888k 0 --:--:-- 0:00:02 --:--:-- 888k 100 3372k 0 3372k 0 0 951k 0 --:--:-- 0:00:03 --:--:-- 951k 100 4439k 0 4439k 0 0 1017k 0 --:--:-- 0:00:04 --:--:-- 1017k 100 6464k 0 6464k 0 0 1178k 0 --:--:-- 0:00:05 --:--:-- 1257k 100 7975k 0 7975k 0 0 1254k 0 --:--:-- 0:00:06 --:--:-- 1369k 100 9675k 0 9675k 0 0 1302k 0 --:--:-- 0:00:07 --:--:-- 1490k 100 11.2M 0 11.2M 0 0 1370k 0 --:--:-- 0:00:08 --:--:-- 1676k 100 13.3M 0 13.3M 0 0 1461k 0 --:--:-- 0:00:09 --:--:-- 1851k 100 16.6M 0 16.6M 0 0 1643k 0 --:--:-- 0:00:10 --:--:-- 2165k 100 18.8M 0 18.8M 0 0 1702k 0 --:--:-- 0:00:11 --:--:-- 2276k 100 22.2M 0 22.2M 0 0 1850k 0 --:--:-- 0:00:12 --:--:-- 2685k 100 25.3M 0 25.3M 0 0 1948k 0 --:--:-- 0:00:13 --:--:-- 2934k 100 27.9M 0 27.9M 0 0 2029k 0 --:--:-- 0:00:14 --:--:-- 3140k ==> Done. Sequences written: 42547 ==> Output: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/run_data/human/human_proteins.canonical_isoform.fasta ==> Accession record: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/run_logs/human_proteins.canonical_isoform.accessions.tsv (42547 accessions) ---- [09:36:50] Module IV-B: supported collection — HOMD proteomes ---- [INFO] [09:36:50] Fetching HOMD taxonomy table... ==> Using PINNED local HOMD taxonomy table (download skipped) ==> Source : /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/99.prepackaged_inputs/MOD-IV.HOMD_taxon_table2026-08-02_1785700972.txt ==> Output : /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/run_data/homd/homd_taxonomy_raw.tsv ==> Done. Rows in table (excluding header): 901 ==> Output: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/run_data/homd/homd_taxonomy_raw.tsv ==> Copied to: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/run_data/homd/homd_taxonomy.tsv ==> Downloading HOMD GCA_ID_info.txt... ==> Version: V11.03 ==> URL : https://www.homd.org/ftp/genomes/PROKKA/V11.03/GCA_ID_info.txt ==> Output : /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/run_data/homd/GCA_ID_info_V11.03.txt % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 1260k 100 1260k 0 0 4966k 0 --:--:-- --:--:-- --:--:-- 7201k ==> Done. GCA entries: 8177 ==> Output: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/run_data/homd/GCA_ID_info_V11.03.txt [INFO] [09:36:50] Fetching HOMD proteomes... [INFO] Filtering HOMD taxonomy to site(s): oral Matched 527 / 900 taxa for sites: ['oral'] HMT-ID Genus Species Body Site(s) --------------------------------- HMT-0008 Mogibacterium vescum Oral (Abundance: Low) | Unassigned HMT-0011 Eikenella sp. HMT-011 Oral (Abundance: Scarce) | Unassigned HMT-0012 Kingella sp. HMT-012 Oral (Abundance: Medium) | Unassigned HMT-0013 Neisseria bacilliformis Oral (Abundance: Medium) | Unassigned HMT-0014 Neisseria oralis Oral (Abundance: Medium) | Unassigned HMT-0018 Neisseria sp. HMT-018 Oral (Abundance: Medium) | Unassigned HMT-0020 Neisseria sp. HMT-020 Oral (Abundance: Scarce) | Unassigned HMT-0021 Streptococcus vestibularis Oral (Abundance: High) | Unassigned HMT-0022 Lautropia mirabilis Oral (Abundance: High) | Unassigned HMT-0029 Treponema vincentii Oral (Abundance: Low) | Unassigned HMT-0035 Haemophilus paraphrohaemolyticus Oral (Abundance: High) | Unassigned HMT-0036 Haemophilus sp. HMT-036 Oral (Abundance: High) | Unassigned HMT-0038 Olsenella uli Oral (Abundance: Scarce) | Unassigned HMT-0041 Desulfobulbus oralis Oral (Abundance: Scarce) | Unassigned HMT-0042 Mogibacterium timidum Oral (Abundance: Medium) | Unassigned HMT-0043 Actinomyces oris Oral (Abundance: Medium) | Unassigned HMT-0044 Campylobacter sp. HMT-044 Oral (Abundance: Medium) | Unassigned HMT-0046 Gemella morbillorum Oral (Abundance: Medium) | Unassigned HMT-0056 Streptococcus sp. HMT-056 Oral (Abundance: Medium) | Unassigned HMT-0057 Streptococcus sp. HMT-057 Oral (Abundance: Medium) | Unassigned HMT-0058 Streptococcus sp. HMT-058 Oral (Abundance: Scarce) | Unassigned HMT-0061 Streptococcus infantis Oral (Abundance: Medium) | Unassigned HMT-0064 Streptococcus sp. HMT-064 Oral (Abundance: Low) | Unassigned HMT-0066 Streptococcus sp. HMT-066 Oral (Abundance: Medium) | Unassigned HMT-0070 Streptococcus sp. HMT-070 Oral (Abundance: Scarce) | Unassigned HMT-0071 Streptococcus oralis Oral (Abundance: Scarce) | Unassigned HMT-0073 Streptococcus australis Oral (Abundance: High) | Unassigned HMT-0074 Streptococcus sp. HMT-074 Oral (Abundance: Medium) | Unassigned HMT-0075 Ruminococcaceae [G1] bacterium HMT-075 Oral (Abundance: High) | Unassigned HMT-0078 Oribacterium sp. HMT-078 Oral (Abundance: Medium) | Unassigned HMT-0079 Actinomyces oris Oral (Abundance: Medium) | Unassigned HMT-0080 Butyrivibrio sp. HMT-080 Oral (Abundance: Low) | Unassigned HMT-0081 Peptoanaerobacter stomatis Oral (Abundance: Low) | Unassigned HMT-0082 Lachnoanaerobaculum orale Oral (Abundance: Medium) | Unassigned HMT-0083 Lachnoanaerobaculum sp. HMT-083 Oral (Abundance: Medium) | Unassigned HMT-0085 Ruminococcaceae [G2] bacterium HMT-085 Oral (Abundance: Medium) | Unassigned HMT-0088 Lachnospiraceae [G2] bacterium HMT-088 Oral (Abundance: Low) | Unassigned HMT-0091 Anaerovoracaceae [G2] bacterium HMT-091 Oral (Abundance: Low) | Unassigned HMT-0093 Clostridiales [F1 G1] bacterium HMT-093 Oral (Abundance: Low) | Unassigned HMT-0096 Lachnospiraceae [G2] bacterium HMT-096 Oral (Abundance: Medium) | Unassigned HMT-0097 Moryella sp. HMT-097 Oral (Abundance: Medium) | Unassigned HMT-0099 Neisseria macacae Oral (Abundance: Medium) | Unassigned HMT-0100 Lachnospiraceae [G3] bacterium HMT-100 Oral (Abundance: Medium) | Unassigned HMT-0101 Neisseria perflava Oral (Abundance: High) | Unassigned HMT-0102 Oribacterium sp. HMT-102 Oral (Abundance: Scarce) | Unassigned HMT-0103 Anaerovoracaceae [G4] bacterium HMT-103 Oral (Abundance: Low) | Unassigned HMT-0105 Anaerovoracaceae [G1] infirmum Oral (Abundance: Low) | Unassigned HMT-0106 Peptoanaerobacter yurii Oral (Abundance: Medium) | Unassigned HMT-0107 Lachnoanaerobaculum umeaense Oral (Abundance: Medium) | Unassigned HMT-0108 Oribacterium asaccharolyticum Oral (Abundance: Medium) | Unassigned HMT-0110 Parvimonas sp. HMT-110 Oral (Abundance: Medium) | Unassigned HMT-0111 Parvimonas micra Oral (Abundance: Medium) | Unassigned HMT-0112 Peptostreptococcus stomatis Oral (Abundance: Medium) | Unassigned HMT-0113 Peptoniphilaceae [G1] bacterium HMT-113 Oral (Abundance: Scarce) | Unassigned HMT-0115 Serratia marcescens Oral (Abundance: Scarce) | Environmental -Soil/Water (Abundance: Scarce) HMT-0118 Dialister invisus Oral (Abundance: Medium) | Gastrointestinal Tract (Abundance: Medium) HMT-0119 Dialister sp. HMT-119 Oral (Abundance: Scarce) | Unassigned HMT-0121 Anaeroglobus geminatus Oral (Abundance: Medium) | Unassigned HMT-0122 Megasphaera micronuciformis Oral (Abundance: Medium) | Unassigned HMT-0124 Selenomonas artemidis Oral (Abundance: Low) | Unassigned HMT-0125 Selenomonas flueggei Oral (Abundance: Low) | Unassigned HMT-0126 Selenomonas sp. HMT-126 Oral (Abundance: Medium) | Unassigned HMT-0129 Selenomonadaceae [G1] bacterium HMT-129 Oral (Abundance: Low) | Unassigned HMT-0130 Selenomonas noxia Oral (Abundance: Medium) | Unassigned HMT-0131 Mitsuokella sp. HMT-131 Oral (Abundance: Scarce) | Unassigned HMT-0132 Selenomonadaceae [G1] bacterium HMT-132 Oral (Abundance: Low) | Unassigned HMT-0133 Selenomonas sp. HMT-133 Oral (Abundance: Scarce) | Unassigned HMT-0134 Selenomonas sp. HMT-134 Oral (Abundance: Low) | Unassigned HMT-0135 Selenomonadaceae [G1] bacterium HMT-135 Oral (Abundance: Low) | Unassigned HMT-0136 Selenomonas felix Oral (Abundance: Medium) | Unassigned HMT-0138 Selenomonas timonae Oral (Abundance: Low) | Unassigned HMT-0139 Selenomonas dianae Oral (Abundance: Low) | Unassigned HMT-0144 Actinomyces oris Oral (Abundance: Medium) | Unassigned HMT-0145 Selenomonadaceae [G1] bacterium HMT-145 Oral (Abundance: Scarce) | Unassigned HMT-0146 Selenomonas sp. HMT-146 Oral (Abundance: Low) | Unassigned HMT-0147 Rothia mucilaginosa Oral (Abundance: Low) | Unassigned HMT-0148 Selenomonadaceae [G1] bacterium HMT-148 Oral (Abundance: Scarce) | Unassigned HMT-0150 Selenomonadaceae [G1] bacterium HMT-150 Oral (Abundance: Low) | Unassigned HMT-0151 Selenomonas sputigena Oral (Abundance: Medium) | Unassigned HMT-0155 Selenomonadaceae [G1] bacterium HMT-155 Oral (Abundance: Low) | Unassigned HMT-0156 Veillonella nakazawae Oral (Abundance: High) | Unassigned HMT-0157 Veillonella sp. HMT-157 Oral (Abundance: No Data) | Unassigned HMT-0158 Veillonella rogosae Oral (Abundance: High) | Unassigned HMT-0160 Veillonella dispar Oral (Abundance: High) | Unassigned HMT-0161 Veillonella parvula Oral (Abundance: High) | Unassigned HMT-0164 Catonella sp. HMT-164 Oral (Abundance: Scarce) | Unassigned HMT-0165 Catonella morbi Oral (Abundance: Medium) | Unassigned HMT-0166 Johnsonella sp. HMT-166 Oral (Abundance: Scarce) | Unassigned HMT-0167 Peptococcus sp. HMT-167 Oral (Abundance: Low) | Unassigned HMT-0168 Peptococcus sp. HMT-168 Oral (Abundance: Low) | Unassigned HMT-0169 Actinomyces oris Oral (Abundance: High) | Unassigned HMT-0170 Actinomyces sp. HMT-170 Oral (Abundance: High) | Unassigned HMT-0171 Actinomyces oris Oral (Abundance: High) | Unassigned HMT-0172 Schaalia sp. HMT-172 Oral (Abundance: High) | Unassigned HMT-0176 Actinomyces naeslundii Oral (Abundance: High) | Unassigned HMT-0178 Schaalia hongkongensis Oral (Abundance: Low) | Unassigned HMT-0179 Actinomyces timonensis Oral (Abundance: Low) | Unassigned HMT-0180 Schaalia sp. HMT-180 Oral (Abundance: Medium) | Unassigned HMT-0181 Schaalia lingnae Oral (Abundance: Medium) | Unassigned HMT-0183 Peptidiphaga sp. HMT-183 Oral (Abundance: Medium) | Unassigned HMT-0188 Rothia aeria Oral (Abundance: High) | Unassigned HMT-0191 Propionibacterium acidifaciens Oral (Abundance: Scarce) | Unassigned HMT-0192 Brooklawnia sp. HMT-192 Oral (Abundance: Scarce) | Unassigned HMT-0194 Arachnia rubra Oral (Abundance: High) | Unassigned HMT-0195 Scardovia wiggsiae Oral (Abundance: Medium) | Unassigned HMT-0198 Alloscardovia omnicolens Oral (Abundance: Scarce) | Unassigned HMT-0199 Lancefieldella sp. HMT-199 Oral (Abundance: Scarce) | Unassigned HMT-0200 Fusobacterium vincentii Oral (Abundance: High) | Unassigned HMT-0201 Fusobacterium periodonticum Oral (Abundance: High) | Unassigned HMT-0202 Fusobacterium polymorphum Oral (Abundance: Medium) | Unassigned HMT-0203 Fusobacterium sp. HMT-203 Oral (Abundance: Medium) | Unassigned HMT-0204 Fusobacterium sp. HMT-204 Oral (Abundance: Medium) | Unassigned HMT-0205 Fusobacterium sp. HMT-205 Oral (Abundance: Low) | Unassigned HMT-0206 Cloacibacterium sp. HMT-206 Oral (Abundance: Medium) | Unassigned HMT-0212 Pseudoleptotrichia sp. HMT-212 Oral (Abundance: Medium) | Unassigned HMT-0213 Leptotrichia hongkongensis Oral (Abundance: Medium) | Unassigned HMT-0214 Leptotrichia shahii Oral (Abundance: Scarce) | Unassigned HMT-0215 Pseudoleptotrichia sp. HMT-215 Oral (Abundance: High) | Unassigned HMT-0217 Pseudoleptotrichia sp. HMT-217 Oral (Abundance: Low) | Unassigned HMT-0218 Leptotrichia sp. HMT-218 Oral (Abundance: Medium) | Unassigned HMT-0219 Pseudoleptotrichia sp. HMT-219 Oral (Abundance: Medium) | Unassigned HMT-0221 Leptotrichia sp. HMT-221 Oral (Abundance: Medium) | Unassigned HMT-0222 Leptotrichia wadei Oral (Abundance: Medium) | Unassigned HMT-0223 Leptotrichia sp. HMT-223 Oral (Abundance: Low) | Unassigned HMT-0224 Leptotrichia hofstadii Oral (Abundance: Medium) | Unassigned HMT-0225 Leptotrichia sp. HMT-225 Oral (Abundance: Medium) | Unassigned HMT-0226 Treponema sp. HMT-226 Oral (Abundance: Medium) | Unassigned HMT-0227 Treponema sp. HMT-227 Oral (Abundance: Scarce) | Unassigned HMT-0228 Treponema sp. HMT-228 Oral (Abundance: Scarce) | Unassigned HMT-0230 Treponema sp. HMT-230 Oral (Abundance: Medium) | Unassigned HMT-0231 Treponema sp. HMT-231 Oral (Abundance: Medium) | Unassigned HMT-0232 Treponema sp. HMT-232 Oral (Abundance: Scarce) | Unassigned HMT-0234 Treponema sp. HMT-234 Oral (Abundance: Low) | Unassigned HMT-0235 Treponema sp. HMT-235 Oral (Abundance: Scarce) | Unassigned HMT-0236 Treponema sp. HMT-236 Oral (Abundance: Low) | Unassigned HMT-0237 Treponema sp. HMT-237 Oral (Abundance: Medium) | Unassigned HMT-0238 Treponema sp. HMT-238 Oral (Abundance: Low) | Unassigned HMT-0239 Treponema sp. HMT-239 Oral (Abundance: Low) | Unassigned HMT-0240 Schaalia sp. HMT-240 Oral (Abundance: High) | Unassigned HMT-0242 Treponema sp. HMT-242 Oral (Abundance: Scarce) | Unassigned HMT-0246 Treponema sp. HMT-246 Oral (Abundance: Low) | Unassigned HMT-0247 Treponema sp. HMT-247 Oral (Abundance: Medium) | Unassigned HMT-0248 Fusobacterium sp. HMT-248 Oral (Abundance: High) | Unassigned HMT-0249 Treponema sp. HMT-249 Oral (Abundance: Scarce) | Unassigned HMT-0250 Treponema sp. HMT-250 Oral (Abundance: Scarce) | Unassigned HMT-0251 Treponema sp. HMT-251 Oral (Abundance: Scarce) | Unassigned HMT-0252 Treponema sp. HMT-252 Oral (Abundance: Scarce) | Unassigned HMT-0253 Treponema sp. HMT-253 Oral (Abundance: Low) | Unassigned HMT-0254 Treponema sp. HMT-254 Oral (Abundance: Low) | Unassigned HMT-0256 Treponema sp. HMT-256 Oral (Abundance: Scarce) | Unassigned HMT-0257 Treponema sp. HMT-257 Oral (Abundance: Medium) | Unassigned HMT-0258 Treponema sp. HMT-258 Oral (Abundance: Low) | Unassigned HMT-0260 Treponema sp. HMT-260 Oral (Abundance: Low) | Unassigned HMT-0262 Treponema sp. HMT-262 Oral (Abundance: Low) | Unassigned HMT-0263 Treponema sp. HMT-263 Oral (Abundance: Scarce) | Unassigned HMT-0264 Treponema sp. HMT-264 Oral (Abundance: Scarce) | Unassigned HMT-0265 Treponema sp. HMT-265 Oral (Abundance: Scarce) | Unassigned HMT-0268 Treponema sp. HMT-268 Oral (Abundance: Low) | Unassigned HMT-0269 Treponema sp. HMT-269 Oral (Abundance: Scarce) | Unassigned HMT-0270 Treponema sp. HMT-270 Oral (Abundance: Low) | Unassigned HMT-0271 Treponema sp. HMT-271 Oral (Abundance: Scarce) | Unassigned HMT-0272 Phocaeicola abscessus Oral (Abundance: Scarce) | Unassigned HMT-0273 Porphyromonas endodontalis Oral (Abundance: High) | Unassigned HMT-0274 Paludibacteraceae [G1] bacterium HMT-274 Oral (Abundance: High) | Unassigned HMT-0275 Porphyromonas sp. HMT-275 Oral (Abundance: Scarce) | Unassigned HMT-0277 Porphyromonas sp. HMT-277 Oral (Abundance: Low) | Unassigned HMT-0278 Porphyromonas sp. HMT-278 Oral (Abundance: Medium) | Unassigned HMT-0279 Porphyromonas pasteri Oral (Abundance: High) | Unassigned HMT-0280 Odoribacteraceae [G3] bacterium HMT-280 Oral (Abundance: Scarce) | Unassigned HMT-0281 Odoribacteraceae [G3] bacterium HMT-281 Oral (Abundance: Scarce) | Unassigned HMT-0283 Porphyromonas catoniae Oral (Abundance: Medium) | Unassigned HMT-0284 Porphyromonas sp. HMT-284 Oral (Abundance: Medium) | Unassigned HMT-0286 Tannerella serpentiformis Oral (Abundance: Medium) | Unassigned HMT-0288 Segatella oulorum Oral (Abundance: Medium) | Unassigned HMT-0289 Segatella maculosa Oral (Abundance: Medium) | Unassigned HMT-0291 Prevotella denticola Oral (Abundance: High) | Unassigned HMT-0298 Prevotella histicola Oral (Abundance: High) | Unassigned HMT-0299 Hoylesella nanceiensis Oral (Abundance: High) | Unassigned HMT-0300 Segatella sp. HMT-300 Oral (Abundance: Medium) | Unassigned HMT-0301 Hoylesella sp. HMT-301 Oral (Abundance: Low) | Unassigned HMT-0302 Alloprevotella rava Oral (Abundance: Medium) | Unassigned HMT-0303 Hoylesella pleuritidis Oral (Abundance: Medium) | Unassigned HMT-0304 Prevotella sp. HMT-304 Oral (Abundance: Medium) | Unassigned HMT-0305 Segatella sp. HMT-305 Oral (Abundance: Medium) | Unassigned HMT-0306 Prevotella vespertina Oral (Abundance: High) | Unassigned HMT-0307 Segatella salivae Oral (Abundance: Medium) | Unassigned HMT-0308 Alloprevotella sp. HMT-308 Oral (Abundance: Medium) | Unassigned HMT-0309 Segatella sp. HMT-309 Oral (Abundance: Medium) | Unassigned HMT-0311 Segatella oris Oral (Abundance: High) | Unassigned HMT-0313 Prevotella jejuni Oral (Abundance: High) | Unassigned HMT-0314 Prevotella sp. HMT-314 Oral (Abundance: Medium) | Unassigned HMT-0315 Hallella sp. HMT-315 Oral (Abundance: Low) | Unassigned HMT-0317 Hoylesella sp. HMT-317 Oral (Abundance: High) | Unassigned HMT-0322 Riemerella sp. HMT-322 Oral (Abundance: High) | Unassigned HMT-0325 Capnocytophaga granulosa Oral (Abundance: Medium) | Unassigned HMT-0326 Capnocytophaga periodontitidis Oral (Abundance: Medium) | Unassigned HMT-0329 Capnocytophaga leadbetteri Oral (Abundance: High) | Unassigned HMT-0332 Capnocytophaga bilenii Oral (Abundance: Medium) | Unassigned HMT-0337 Capnocytophaga gingivalis Oral (Abundance: High) | Unassigned HMT-0338 Capnocytophaga sp. HMT-338 Oral (Abundance: Medium) | Unassigned HMT-0345 Absconditicoccaceae [G1] bacterium HMT-345 Oral (Abundance: Medium) | Unassigned HMT-0346 Saccharimonas sp. HMT-346 Oral (Abundance: High) | Unassigned HMT-0347 Saccharimonas sp. HMT-347 Oral (Abundance: Medium) | Unassigned HMT-0348 Parvisynbacter sp. HMT-348 Oral (Abundance: Medium) | Unassigned HMT-0349 Saccharimonas sp. HMT-349 Oral (Abundance: Medium) | Unassigned HMT-0350 Saccharimonadales [F1 G1] bacterium HMT-350 Oral (Abundance: Medium) | Unassigned HMT-0351 Nanosyncoccus sp. HMT-351 Oral (Abundance: High) | Unassigned HMT-0352 Nanosynbacter sp. HMT-352 Oral (Abundance: High) | Unassigned HMT-0353 Nanosynbacter sp. HMT-353 Oral (Abundance: Low) | Unassigned HMT-0355 Saccharimonadales [F3 G1] bacterium HMT-355 Oral (Abundance: Low) | Unassigned HMT-0356 Nanoperiomorbus periodonticus Oral (Abundance: Medium) | Unassigned HMT-0357 Pyramidobacter piscolens Oral (Abundance: Scarce) | Unassigned HMT-0358 Fretibacterium sp. HMT-358 Oral (Abundance: Low) | Unassigned HMT-0359 Fretibacterium sp. HMT-359 Oral (Abundance: Low) | Unassigned HMT-0360 Fretibacterium sp. HMT-360 Oral (Abundance: Medium) | Unassigned HMT-0361 Fretibacterium sp. HMT-361 Oral (Abundance: Scarce) | Unassigned HMT-0362 Fretibacterium sp. HMT-362 Oral (Abundance: Low) | Unassigned HMT-0363 Fretibacterium fastidiosum Oral (Abundance: Low) | Unassigned HMT-0364 Nanosyncoccus sp. HMT-364 Oral (Abundance: Scarce) | Unassigned HMT-0365 Odoribacteraceae [G3] bacterium HMT-365 Oral (Abundance: Low) | Unassigned HMT-0366 Ruminococcaceae [G3] bacterium HMT-366 Oral (Abundance: Scarce) | Unassigned HMT-0367 Nanosyncoccus alces Oral (Abundance: Scarce) | Unassigned HMT-0370 Fusobacterium sp. HMT-370 Oral (Abundance: Scarce) | Unassigned HMT-0371 Nanosyncoccus nanoralicus Oral (Abundance: Scarce) | Unassigned HMT-0373 Stomatobaculum sp. HMT-373 Oral (Abundance: Scarce) | Unassigned HMT-0376 Hallella sp. HMT-376 Oral (Abundance: Scarce) | Unassigned HMT-0377 Peptoanaerobacter yurii Oral (Abundance: Medium) | Unassigned HMT-0378 Prevotella micans Oral (Abundance: Low) | Unassigned HMT-0386 Anaerosphaera mikwangii Oral (Abundance: Scarce) | Unassigned HMT-0388 Selenomonas sp. HMT-388 Oral (Abundance: Scarce) | Unassigned HMT-0389 Abiotrophia defectiva Oral (Abundance: High) | Unassigned HMT-0390 Parvisynbacter sp. HMT-390 Oral (Abundance: No Data) | Unassigned HMT-0391 Saccharimonadales [F5 G1] bacterium HMT-391 Oral (Abundance: No Data) | Unassigned HMT-0392 Pseudoleptotrichia sp. HMT-392 Oral (Abundance: Medium) | Unassigned HMT-0393 Parvimonas sp. HMT-393 Oral (Abundance: Scarce) | Unassigned HMT-0394 Saccharimonas sp. HMT-394 Oral (Abundance: No Data) | Unassigned HMT-0396 Prevotella sp. HMT-396 Oral (Abundance: Low) | Unassigned HMT-0397 Saccharimonas sp. HMT-397 Oral (Abundance: No Data) | Unassigned HMT-0398 Streptococcus oralis Oral (Abundance: High) | Unassigned HMT-0399 Nanogingivalis sp. HMT-399 Oral (Abundance: No Data) | Unassigned HMT-0400 Nanogingivalis sp. HMT-400 Oral (Abundance: No Data) | Unassigned HMT-0401 Nanogingivalis sp. HMT-401 Oral (Abundance: No Data) | Unassigned HMT-0403 Actinomyces sp. HMT-403 Oral (Abundance: No Data) | Unassigned HMT-0404 Schaalia sp. HMT-404 Oral (Abundance: No Data) | Unassigned HMT-0405 Kingella negevensis Oral (Abundance: Medium) | Unassigned HMT-0406 Ralstonia sp. HMT-406 Oral (Abundance: Medium) | Unassigned HMT-0409 Lautropia dentalis Oral (Abundance: High) | Unassigned HMT-0410 Prevotella sp. HMT-410 Oral (Abundance: Medium) | Unassigned HMT-0411 Streptococcus parasanguinis Oral (Abundance: Scarce) | Unassigned HMT-0413 Alloprevotella sp. HMT-413 Oral (Abundance: Medium) | Unassigned HMT-0414 Actinomyces sp. HMT-414 Oral (Abundance: Low) | Unassigned HMT-0415 Streptococcus rubneri Oral (Abundance: Medium) | Unassigned HMT-0416 Fannyhessea sp. HMT-416 Oral (Abundance: Scarce) | Unassigned HMT-0417 Leptotrichia sp. HMT-417 Oral (Abundance: High) | Unassigned HMT-0419 Stomatobaculum longum Oral (Abundance: Medium) | Unassigned HMT-0420 Fusobacterium animalis Oral (Abundance: High) | Unassigned HMT-0421 Veillonella tobetsuensis Oral (Abundance: Medium) | Unassigned HMT-0423 Streptococcus sp. HMT-423 Oral (Abundance: No Data) | Unassigned HMT-0425 Streptococcus pseudopneumoniae Oral (Abundance: No Data) | Unassigned HMT-0426 Aggregatibacter kilianii Oral (Abundance: Medium) | Unassigned HMT-0427 Abiotrophia sp. HMT-427 Oral (Abundance: Medium) | Unassigned HMT-0428 Catonella massiliensis Oral (Abundance: Medium) | Unassigned HMT-0429 Fusobacterium pseudoperiodonticum Oral (Abundance: High) | Unassigned HMT-0430 Lachnoanaerobaculum sp. HMT-430 Oral (Abundance: Medium) | Unassigned HMT-0431 Streptococcus infantis Oral (Abundance: High) | Unassigned HMT-0432 Treponema vincentii Oral (Abundance: Medium) | Unassigned HMT-0433 Campylobacter concisus Oral (Abundance: High) | Unassigned HMT-0434 Gemella haemolysans Oral (Abundance: High) | Unassigned HMT-0438 Treponema socranskii Oral (Abundance: Medium) | Unassigned HMT-0439 Anaerolineae [G1] bacterium HMT-439 Oral (Abundance: Scarce) | Unassigned HMT-0440 Treponema socranskii Oral (Abundance: Medium) | Unassigned HMT-0441 Lachnoanaerobaculum sp. HMT-441 Oral (Abundance: Low) | Unassigned HMT-0442 Selenomonas sp. HMT-442 Oral (Abundance: Scarce) | Unassigned HMT-0443 Segatella sp. HMT-443 Oral (Abundance: Low) | Unassigned HMT-0444 Streptococcus infantis Oral (Abundance: High) | Unassigned HMT-0447 Fusobacterium simiae Oral (Abundance: No Data) | Unassigned HMT-0448 Actinomyces sp. HMT-448 Oral (Abundance: Medium) | Unassigned HMT-0451 Catonella sp. HMT-451 Oral (Abundance: Scarce) | Unassigned HMT-0455 Butyrivibrio sp. HMT-455 Oral (Abundance: Low) | Unassigned HMT-0456 Streptococcus ilei Oral (Abundance: No Data) | Unassigned HMT-0457 Oribacterium sinus Oral (Abundance: High) | Unassigned HMT-0458 Aggregatibacter sp. HMT-458 Oral (Abundance: Medium) | Unassigned HMT-0459 Kingella sp. HMT-459 Oral (Abundance: Medium) | Unassigned HMT-0460 Lachnoanaerobaculum gingivalis Oral (Abundance: Low) | Unassigned HMT-0463 Leptotrichia sp. HMT-463 Oral (Abundance: Low) | Unassigned HMT-0464 Fusobacterium watanabei Oral (Abundance: No Data) | Unassigned HMT-0465 Bacteroides zoogleoformans Oral (Abundance: Scarce) | Unassigned HMT-0466 Alloprevotella tannerae Oral (Abundance: Medium) | Unassigned HMT-0467 Anaerovoracaceae [G1] sulci Oral (Abundance: Medium) | Unassigned HMT-0469 Prevotella melaninogenica Oral (Abundance: High) | Unassigned HMT-0470 Capnocytophaga sp. HMT-470 Oral (Abundance: Medium) HMT-0471 Capnocytophaga sp. HMT-471 Oral (Abundance: Medium) HMT-0473 Alloprevotella sp. HMT-473 Oral (Abundance: High) | Unassigned HMT-0475 Hoylesella sp. HMT-475 Oral (Abundance: Scarce) | Unassigned HMT-0476 Neisseria subflava Oral (Abundance: High) | Unassigned HMT-0479 Selenomonas sp. HMT-479 Oral (Abundance: Low) | Unassigned HMT-0481 Selenomonas sp. HMT-481 Oral (Abundance: Low) | Unassigned HMT-0483 Selenomonadaceae [G1] bacterium HMT-483 Oral (Abundance: Low) | Unassigned HMT-0488 Nanosynbacter fur Oral (Abundance: Low) | Unassigned HMT-0490 Treponema sp. HMT-490 Oral (Abundance: Low) | Unassigned HMT-0493 Anaerovoracaceae [G5] bacterium HMT-493 Oral (Abundance: Scarce) | Unassigned HMT-0494 Lachnoanaerobaculum saburreum Oral (Abundance: Medium) | Unassigned HMT-0495 Anaerovoracaceae [G3] bacterium HMT-495 Oral (Abundance: Scarce) | Unassigned HMT-0496 Lachnoanaerobaculum sp. HMT-496 Oral (Abundance: Scarce) | Unassigned HMT-0498 Leptotrichia sp. HMT-498 Oral (Abundance: Medium) | Unassigned HMT-0499 Neisseria sp. HMT-499 Oral (Abundance: Scarce) | Unassigned HMT-0500 Lachnospiraceae [G8] bacterium HMT-500 Oral (Abundance: Scarce) | Unassigned HMT-0501 Selenomonas sp. HMT-501 Oral (Abundance: Scarce) | Unassigned HMT-0503 Odoribacteraceae [G3] bacterium HMT-503 Oral (Abundance: Scarce) | Unassigned HMT-0504 Mollicutes [O1 F1 G1] bacterium HMT-504 Oral (Abundance: Scarce) | Unassigned HMT-0505 Odoribacteraceae [G5] bacterium HMT-505 Oral (Abundance: Low) | Unassigned HMT-0507 Odoribacteraceae [G5] bacterium HMT-507 Oral (Abundance: Scarce) | Unassigned HMT-0508 Treponema sp. HMT-508 Oral (Abundance: Low) | Unassigned HMT-0511 Odoribacteraceae [G5] bacterium HMT-511 Oral (Abundance: Medium) | Unassigned HMT-0513 Aggregatibacter sp. HMT-513 Oral (Abundance: Low) | Unassigned HMT-0515 Hallella sp. HMT-515 Oral (Abundance: Scarce) | Unassigned HMT-0516 Odoribacter sp. HMT-516 Oral (Abundance: Scarce) | Unassigned HMT-0517 Treponema sp. HMT-517 Oral (Abundance: Low) | Unassigned HMT-0518 Treponema sp. HMT-518 Oral (Abundance: Scarce) | Unassigned HMT-0521 Mitsuokella sp. HMT-521 Oral (Abundance: Medium) | Unassigned HMT-0523 Neisseria sp. HMT-523 Oral (Abundance: Scarce) | Unassigned HMT-0524 Veillonella atypica Oral (Abundance: High) | Unassigned HMT-0525 Actinomyces sp. HMT-525 Oral (Abundance: Low) | Unassigned HMT-0526 Hoylesella koreensis Oral (Abundance: Low) | Unassigned HMT-0531 Aggregatibacter actinomycetemcomitans Oral (Abundance: Scarce) | Unassigned HMT-0534 Granulicatella adiacens Oral (Abundance: High) | Unassigned HMT-0538 Pseudoramibacter alactolyticus Oral (Abundance: Scarce) | Unassigned HMT-0539 Filifactor alocis Oral (Abundance: Medium) | Unassigned HMT-0540 Cardiobacterium valvarum Oral (Abundance: Medium) | Unassigned HMT-0541 Treponema amylovorum Oral (Abundance: Low) | Unassigned HMT-0543 Streptococcus anginosus Oral (Abundance: High) | Unassigned HMT-0545 Aggregatibacter aphrophilus Oral (Abundance: High) | Unassigned HMT-0553 Segatella baroniae Oral (Abundance: Medium) | Unassigned HMT-0555 Gemella bergeri Oral (Abundance: Scarce) | Unassigned HMT-0557 Gallibacter brachus Oral (Abundance: Medium) | Unassigned HMT-0560 Segatella buccae Oral (Abundance: Low) | Unassigned HMT-0561 Metamycoplasma buccale Oral (Abundance: Scarce) | Unassigned HMT-0563 Leptotrichia buccalis Oral (Abundance: Medium) | Unassigned HMT-0572 Prevotella veroralis Oral (Abundance: Medium) | Unassigned HMT-0575 Campylobacter concisus Oral (Abundance: Medium) | Unassigned HMT-0576 Streptococcus constellatus Oral (Abundance: Medium) | Unassigned HMT-0577 Eikenella corrodens Oral (Abundance: Medium) | Unassigned HMT-0578 Streptococcus cristatus Oral (Abundance: Low) | Unassigned HMT-0579 Cryptobacterium curtum Oral (Abundance: Scarce) | Unassigned HMT-0580 Campylobacter curvus Oral (Abundance: Low) | Unassigned HMT-0582 Kingella denitrificans Oral (Abundance: Medium) | Unassigned HMT-0583 Hallella dentalis Oral (Abundance: Scarce) | Unassigned HMT-0584 Treponema denticola Oral (Abundance: Medium) | Unassigned HMT-0586 Parascardovia denticolens Oral (Abundance: Scarce) | Unassigned HMT-0587 Rothia dentocariosa Oral (Abundance: High) | Unassigned HMT-0593 Mogibacterium diversum Oral (Abundance: Medium) | Unassigned HMT-0594 Streptococcus downei Oral (Abundance: Scarce) | Unassigned HMT-0595 Corynebacterium durum Oral (Abundance: High) | Unassigned HMT-0596 Granulicatella elegans Oral (Abundance: High) | Unassigned HMT-0598 Neisseria elongata Oral (Abundance: High) | Unassigned HMT-0600 Hoylesella enoeca Oral (Abundance: Scarce) | Unassigned HMT-0602 Slackia exigua Oral (Abundance: Scarce) | Unassigned HMT-0603 Bulleidia extructa Oral (Abundance: Medium) | Unassigned HMT-0606 Metamycoplasma faucium Oral (Abundance: Low) | Unassigned HMT-0607 Mycoplasmopsis fermentans Oral (Abundance: Scarce) | Unassigned HMT-0608 Limosilactobacillus fermentum Oral (Abundance: Scarce) | Unassigned HMT-0609 Neisseria flava Oral (Abundance: Medium) | Unassigned HMT-0610 Neisseria flavescens Oral (Abundance: High) | Unassigned HMT-0613 Tannerella forsythia Oral (Abundance: Medium) | Unassigned HMT-0617 Schaalia georgiae Oral (Abundance: Medium) | Unassigned HMT-0618 Actinomyces gerencseriae Oral (Abundance: Medium) | Unassigned HMT-0619 Porphyromonas gingivalis Oral (Abundance: Medium) | Unassigned HMT-0622 Streptococcus gordonii Oral (Abundance: High) | Unassigned HMT-0623 Campylobacter gracilis Oral (Abundance: High) | Unassigned HMT-0626 Gemella haemolysans Oral (Abundance: High) | Unassigned HMT-0627 Capnocytophaga haemolytica Oral (Abundance: Scarce) | Unassigned HMT-0630 Bacteroides heparinolyticus Oral (Abundance: Scarce) | Unassigned HMT-0633 Cardiobacterium hominis Oral (Abundance: High) | Unassigned HMT-0635 Johnsonella ignava Oral (Abundance: Medium) | Unassigned HMT-0638 Streptococcus infantis Oral (Abundance: High) | Unassigned HMT-0639 Selenomonas infelix Oral (Abundance: Medium) | Unassigned HMT-0641 Haemophilus influenzae Oral (Abundance: Scarce) | Unassigned HMT-0642 Scardovia inopinata Oral (Abundance: Scarce) | Unassigned HMT-0643 Prevotella intermedia Oral (Abundance: High) | Unassigned HMT-0644 Streptococcus intermedius Oral (Abundance: Medium) | Unassigned HMT-0645 Actinomyces israelii Oral (Abundance: Low) | Unassigned HMT-0646 Kingella kingae Oral (Abundance: Scarce) | Opportunistic Pathogen (Abundance: No data) HMT-0649 Neisseria lactamica Oral (Abundance: Scarce) | Unassigned HMT-0653 Treponema lecithinolyticum Oral (Abundance: Medium) | Unassigned HMT-0656 Mycoplasmopsis lipophila Oral (Abundance: Scarce) | Unassigned HMT-0658 Hoylesella loescheii Oral (Abundance: Medium) | Unassigned HMT-0664 Treponema maltophilum Oral (Abundance: Medium) | Unassigned HMT-0665 Hoylesella marshii Oral (Abundance: Scarce) | Unassigned HMT-0666 Corynebacterium matruchotii Oral (Abundance: High) | Unassigned HMT-0667 Treponema medium Oral (Abundance: Medium) | Unassigned HMT-0669 Neisseria meningitidis Oral (Abundance: Scarce) | Unassigned HMT-0671 Schaalia meyeri Oral (Abundance: Low) | Unassigned HMT-0673 Hornefia minuta Oral (Abundance: Scarce) | Unassigned HMT-0677 Streptococcus mitis Oral (Abundance: High) | Unassigned HMT-0678 Solobacterium moorei Oral (Abundance: Medium) | Unassigned HMT-0681 Rothia mucilaginosa Oral (Abundance: High) | Unassigned HMT-0682 Neisseria mucosa Oral (Abundance: High) | Unassigned HMT-0683 Simonsiella muelleri Oral (Abundance: High) | Unassigned HMT-0685 Prevotella multiformis Oral (Abundance: Low) | Unassigned HMT-0686 Streptococcus mutans Oral (Abundance: Medium) | Unassigned HMT-0688 Actinomyces viscosus Oral (Abundance: Medium) | Unassigned HMT-0690 Fusobacterium necrophorum Oral (Abundance: Scarce) | Unassigned HMT-0691 Mogibacterium neglectum Oral (Abundance: Low) | Unassigned HMT-0693 Prevotella nigrescens Oral (Abundance: Medium) | Unassigned HMT-0694 Hornefia nodatum Oral (Abundance: Medium) | Unassigned HMT-0698 Fusobacterium nucleatum_sensu_stricto Oral (Abundance: Low) | Unassigned HMT-0700 Capnocytophaga ochracea Oral (Abundance: High) | Unassigned HMT-0701 Schaalia odontolytica Oral (Abundance: High) | Unassigned HMT-0703 Desulfomicrobium orale Oral (Abundance: Scarce) | Unassigned HMT-0704 Metamycoplasma orale Oral (Abundance: Scarce) | Unassigned HMT-0705 Hoylesella oralis Oral (Abundance: Low) | Unassigned HMT-0706 Kingella oralis Oral (Abundance: High) | Unassigned HMT-0707 Streptococcus oralis Oral (Abundance: Medium) | Unassigned HMT-0708 Actinomyces oricola Oral (Abundance: Scarce) | Unassigned HMT-0710 Schaalia dentiphila Oral (Abundance: Medium) | Unassigned HMT-0714 Prevotella pallens Oral (Abundance: High) | Unassigned HMT-0718 Haemophilus parainfluenzae Oral (Abundance: High) | Unassigned HMT-0723 Lancefieldella parvula Oral (Abundance: High) | Unassigned HMT-0724 Treponema parvum Oral (Abundance: Scarce) | Unassigned HMT-0725 Treponema pectinovorum Oral (Abundance: Scarce) | Unassigned HMT-0726 Centipeda periodontii Oral (Abundance: Low) | Unassigned HMT-0728 Streptococcus peroris Oral (Abundance: Medium) | Unassigned HMT-0734 Streptococcus pneumoniae Oral (Abundance: Scarce) | Unassigned HMT-0736 Dialister pneumosintes Oral (Abundance: Medium) | Unassigned HMT-0737 Neisseria polysaccharea Oral (Abundance: Scarce) | Unassigned HMT-0739 Arachnia propionica Oral (Abundance: Medium) | Unassigned HMT-0742 Mogibacterium pumilum Oral (Abundance: Scarce) | Unassigned HMT-0743 Treponema putidum Oral (Abundance: Scarce) | Unassigned HMT-0746 Actinomyces radicidentis Oral (Abundance: Scarce) | Unassigned HMT-0748 Campylobacter rectus Oral (Abundance: Medium) | Unassigned HMT-0750 Lancefieldella rimae Oral (Abundance: Medium) | Unassigned HMT-0754 Metamycoplasma salivarium Oral (Abundance: Medium) | Unassigned HMT-0755 Streptococcus salivarius Oral (Abundance: High) | Unassigned HMT-0757 Gemella sanguinis Oral (Abundance: Medium) | Unassigned HMT-0758 Streptococcus sanguinis Oral (Abundance: High) | Unassigned HMT-0759 Anaerovoracaceae [G5] saphenum Oral (Abundance: Scarce) | Unassigned HMT-0762 Aggregatibacter segnis Oral (Abundance: Medium) | Unassigned HMT-0763 Campylobacter showae Oral (Abundance: Medium) | Unassigned HMT-0764 Neisseria sicca Oral (Abundance: High) | Unassigned HMT-0767 Streptococcus sinensis Oral (Abundance: Scarce) | Unassigned HMT-0768 Streptococcus sobrinus Oral (Abundance: Scarce) | Unassigned HMT-0769 Treponema socranskii Oral (Abundance: Medium) | Unassigned HMT-0775 Capnocytophaga sputigena Oral (Abundance: Medium) | Unassigned HMT-0779 Veillonella sp. HMT-779 Oral (Abundance: Medium) | Unassigned HMT-0780 Veillonella sp. HMT-780 Oral (Abundance: High) | Unassigned HMT-0781 Hoylesella saccharolytica Oral (Abundance: Medium) | Unassigned HMT-0782 Prevotella fusca Oral (Abundance: Low) | Unassigned HMT-0790 Peptoniphilaceae [G2] bacterium HMT-790 Oral (Abundance: Scarce) | Unassigned HMT-0795 Hoylesella shahii Oral (Abundance: Medium) | Unassigned HMT-0796 Peptoanaerobacter margaretiae Oral (Abundance: No Data) | Unassigned HMT-0806 Olsenella profusa Oral (Abundance: Scarce) | Unassigned HMT-0807 Olsenella sp. HMT-807 Oral (Abundance: Medium) | Unassigned HMT-0808 Tannerella sp. HMT-808 Oral (Abundance: Medium) | Unassigned HMT-0815 Methanobrevibacter oralis Oral (Abundance: Scarce) | Unassigned HMT-0820 Prevotella illustrans Oral (Abundance: Scarce) | Unassigned HMT-0833 Moraxella catarrhalis Nasal (Abundance: Medium) | Oral (Abundance: Medium) HMT-0843 Dialister micraerophilus Vaginal (Abundance: Medium) | Oral (Abundance: Low) HMT-0845 Pseudoleptotrichia goodfellowii Oral (Abundance: Medium) | Unassigned HMT-0847 Leptotrichia sp. HMT-847 Oral (Abundance: Scarce) | Unassigned HMT-0848 Peptidiphaga gingivicola Oral (Abundance: Medium) | Unassigned HMT-0849 Actinomyces johnsonii Oral (Abundance: Medium) | Unassigned HMT-0850 Schaalia cardiffensis Oral (Abundance: Scarce) | Unassigned HMT-0851 Haemophilus haemolyticus Oral (Abundance: High) | Unassigned HMT-0852 Actinomyces massiliensis Oral (Abundance: High) | Unassigned HMT-0854 Ralstonia pickettii Oral (Abundance: Scarce) | Unassigned HMT-0863 Capnocytophaga sp. HMT-863 Oral (Abundance: Medium) | Unassigned HMT-0866 Actinomyces graevenitzii Oral (Abundance: High) | Unassigned HMT-0869 Saccharimonas sp. HMT-869 Oral (Abundance: Medium) | Unassigned HMT-0870 Nanogingivalis gingivitcus Oral (Abundance: Medium) | Unassigned HMT-0871 Patescibacteria [C1 O1 F1 G1] bacterium HMT-871 Oral (Abundance: Low) | Unassigned HMT-0872 Patescibacteria [C1 O1 F1 G1] bacterium HMT-872 Oral (Abundance: Medium) | Unassigned HMT-0873 Patescibacteria [C1 O1 F1 G2] bacterium HMT-873 Oral (Abundance: Scarce) | Unassigned HMT-0874 Absconditicoccaceae [G1] bacterium HMT-874 Oral (Abundance: Medium) | Unassigned HMT-0875 Absconditicoccaceae [G1] bacterium HMT-875 Oral (Abundance: Medium) | Unassigned HMT-0878 Capnocytophaga sp. HMT-878 Oral (Abundance: Scarce) | Unassigned HMT-0879 Leptotrichia sp. HMT-879 Oral (Abundance: Medium) | Unassigned HMT-0885 Prevotella scopos Oral (Abundance: Medium) | Unassigned HMT-0887 Veillonella denticariosi Oral (Abundance: Scarce) | Unassigned HMT-0888 Actinomyces dentalis Oral (Abundance: High) | Unassigned HMT-0892 Selenomonas sp. HMT-892 Oral (Abundance: Low) | Unassigned HMT-0893 Actinomyces oris Oral (Abundance: High) | Unassigned HMT-0894 Ottowia sp. HMT-894 Oral (Abundance: Medium) | Unassigned HMT-0896 Actinomyces sp. HMT-896 Oral (Abundance: Low) | Unassigned HMT-0897 Actinomyces sp. HMT-897 Oral (Abundance: Low) | Unassigned HMT-0898 Aggregatibacter sp. HMT-898 Oral (Abundance: Low) | Unassigned HMT-0900 Weeksellaceae [G1] bacterium HMT-900 Oral (Abundance: Medium) | Unassigned HMT-0901 Capnocytophaga sp. HMT-901 Oral (Abundance: Scarce) | Unassigned HMT-0904 Erysipelotrichaceae [G1] bacterium HMT-904 Oral (Abundance: Scarce) | Unassigned HMT-0905 Erysipelotrichaceae [G1] bacterium HMT-905 Oral (Abundance: Low) | Unassigned HMT-0906 Mollicutes [O2 F2 G2] bacterium HMT-906 Oral (Abundance: Scarce) | Unassigned HMT-0907 Weeksellaceae [G1] bacterium HMT-907 Oral (Abundance: Scarce) | Unassigned HMT-0909 Leptotrichia sp. HMT-909 Oral (Abundance: Low) | Unassigned HMT-0910 Stomatobaculum sp. HMT-910 Oral (Abundance: Low) | Unassigned HMT-0912 Alloprevotella sp. HMT-912 Oral (Abundance: Low) | Unassigned HMT-0913 Alloprevotella sp. HMT-913 Oral (Abundance: Low) | Unassigned HMT-0914 Alloprevotella sp. HMT-914 Oral (Abundance: Medium) | Unassigned HMT-0915 Propionibacteriaceae [G1] bacterium HMT-915 Oral (Abundance: Scarce) | Unassigned HMT-0916 Tannerella sp. HMT-916 Oral (Abundance: Scarce) | Unassigned HMT-0917 Veillonella sp. HMT-917 Oral (Abundance: Low) | Unassigned HMT-0918 Selenomonadaceae [G1] bacterium HMT-918 Oral (Abundance: Scarce) | Unassigned HMT-0919 Selenomonas sp. HMT-919 Oral (Abundance: Scarce) | Unassigned HMT-0920 Selenomonas sp. HMT-920 Oral (Abundance: Low) | Unassigned HMT-0922 Peptoanaerobacter sp. HMT-922 Oral (Abundance: Low) | Unassigned HMT-0927 Treponema sp. HMT-927 Oral (Abundance: Scarce) | Unassigned HMT-0928 Gemella massiliensis Oral (Abundance: Scarce) | Unassigned HMT-0930 Porphyromonas sp. HMT-930 Oral (Abundance: High) | Unassigned HMT-0931 Weeksellaceae [G1] bacterium HMT-931 Oral (Abundance: Medium) | Unassigned HMT-0932 Kingella sp. HMT-932 Oral (Abundance: Low) | Unassigned HMT-0934 Oribacterium parvum Oral (Abundance: Medium) | Unassigned HMT-0936 Selenomonas sp. HMT-936 Oral (Abundance: Scarce) | Unassigned HMT-0937 Selenomonas sp. HMT-937 Oral (Abundance: Scarce) | Unassigned HMT-0939 Olsenella sp. HMT-939 Oral (Abundance: Scarce) | Unassigned HMT-0942 Hoylesella sp. HMT-942 Oral (Abundance: Medium) | Unassigned HMT-0943 Prevotella aurantiaca Oral (Abundance: Medium) | Unassigned HMT-0944 Haemophilus sputorum Oral (Abundance: Medium) | Unassigned HMT-0945 Haemophilus parahaemolyticus Oral (Abundance: Medium) | Unassigned HMT-0946 Haemophilus pittmaniae Oral (Abundance: Medium) | Unassigned HMT-0948 Streptococcus lactarius Oral (Abundance: Scarce) | Unassigned HMT-0949 Aggregatibacter sp. HMT-949 Oral (Abundance: Low) | Unassigned HMT-0950 Anaerovoracaceae [G3] bacterium HMT-950 Oral (Abundance: Scarce) | Unassigned HMT-0951 Treponema sp. HMT-951 Oral (Abundance: Low) | Unassigned HMT-0952 Nanosynbacter lyticus Oral (Abundance: Medium) | Unassigned HMT-0953 Fusobacterium hwasookii Oral (Abundance: Medium) | Unassigned HMT-0954 Saccharimonadales [F4 G1] bacterium HMT-954 Oral (Abundance: Scarce) | Unassigned HMT-0955 Saccharimonas sicarius Oral (Abundance: Scarce) | Unassigned HMT-0956 Neisseria cinerea Oral (Abundance: High) | Unassigned HMT-0957 Nanosynbacter featherlites Oral (Abundance: Medium) | Unassigned Saved -> /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/run_data/homd/homd_taxonomy_filtered.tsv [INFO] Filtered HMT IDs: 527 [INFO] GCA assemblies selected by body-site filter: 4958 [INFO] Selection report: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/run_data/homd/HOMD_prokka_selection.tsv [INFO] Candidate proteomes after body-site filter: 4958 [INFO] Representative selection ENABLED at rank: species [INFO] Harvesting assembly stats for 4958 candidates (4 job(s))... [INFO] Stats harvested: 4958 / 4958 assemblies -> /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/run_data/homd/HOMD_assembly_stats.tsv [INFO] HMT IDs carrying a 'species' value: 527 [INFO] candidate GCA->HMT pairs: 8177 [INFO] assemblies with stats: 4958 [INFO] 3219 assemblies skipped (HMT not in filtered taxonomy) [INFO] groups: 345 representatives: 345 [INFO] wrote representative report -> /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/run_data/homd/HOMD_representatives.tsv [INFO] wrote download plan -> /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/tmp/HOMD_reps_plan.txt [INFO] Representative report: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/run_data/homd/HOMD_representatives.tsv [INFO] Proteomes to download from HOMD PROKKA: 345 [INFO] Downloading 345 proteomes with 4 parallel job(s)... [INFO] Proteomes successfully downloaded: 345 / 345 [INFO] Done. Total HOMD (PROKKA) proteins written: 729243 [INFO] Output: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/run_data/homd/homd_proteins.fasta [INFO] Selection provenance: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/run_data/homd/HOMD_prokka_selection.tsv [INFO] Representative provenance: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/run_data/homd/HOMD_representatives.tsv ---- [09:39:21] Module I: fetch user-specified proteomes from NCBI ---- [INFO] [09:39:21] Fetching species taxonomy info... Column indices -> 'species': 1 | 'accession': 2 | 'taxonID': 3 | 'source_label': 0 (-1 = absent) ==> spp='Aspergillus fumigatus' acc='GCF_000002655.1' taxid='746128' [PATH A] assembly accession (GCF_000002655.1); fetching metadata via datasets taxid=746128 organism=Aspergillus fumigatus strain= label=Aspergillus fumigatus ==> spp='Candida albicans' acc='GCF_000182965.3' taxid='5476' [PATH A] assembly accession (GCF_000182965.3); fetching metadata via datasets taxid=5476 organism=Candida albicans strain= label=Candida albicans ==> spp='Candida dubliniensis' acc='GCF_000026945.1' taxid='42374' [PATH A] assembly accession (GCF_000026945.1); fetching metadata via datasets taxid=42374 organism=Candida dubliniensis strain= label=Candida dubliniensis ==> spp='Candida parapsilosis' acc='GCF_000182765.1' taxid='5480' [PATH A] assembly accession (GCF_000182765.1); fetching metadata via datasets taxid=5480 organism=Candida parapsilosis strain= label=Candida parapsilosis ==> spp='Candida tropicalis' acc='GCF_000006335.3' taxid='5482' [PATH A] assembly accession (GCF_000006335.3); fetching metadata via datasets taxid=5482 organism=Candida tropicalis strain= label=Candida tropicalis ==> spp='Clavispora lusitaniae' acc='GCF_000003835.1' taxid='36911' [PATH A] assembly accession (GCF_000003835.1); fetching metadata via datasets taxid=36911 organism=Clavispora lusitaniae strain= label=Clavispora lusitaniae ==> spp='Cryptococcus neoformans' acc='GCF_000149245.1' taxid='5207' [PATH A] assembly accession (GCF_000149245.1); fetching metadata via datasets taxid=5207 organism=Cryptococcus neoformans strain= label=Cryptococcus neoformans ==> spp='Kluyveromyces lactis' acc='GCF_000002515.2' taxid='28985' [PATH A] assembly accession (GCF_000002515.2); fetching metadata via datasets taxid=28985 organism=Kluyveromyces lactis strain= label=Kluyveromyces lactis ==> spp='Lodderomyces elongisporus' acc='GCF_000149685.1' taxid='379508' [PATH A] assembly accession (GCF_000149685.1); fetching metadata via datasets taxid=379508 organism=Lodderomyces elongisporus strain= label=Lodderomyces elongisporus ==> spp='Meyerozyma guilliermondii' acc='GCF_000149425.1' taxid='4929' [PATH A] assembly accession (GCF_000149425.1); fetching metadata via datasets taxid=4929 organism=Meyerozyma guilliermondii strain= label=Meyerozyma guilliermondii ==> spp='Nakaseomyces glabratus' acc='GCA_002087555.1' taxid='5478' [PATH A] assembly accession (GCA_002087555.1); fetching metadata via datasets taxid=5478 organism=Nakaseomyces glabratus strain= label=Nakaseomyces glabratus ==> spp='Pichia kudriavzevii' acc='GCF_003054445.1' taxid='4909' [PATH A] assembly accession (GCF_003054445.1); fetching metadata via datasets taxid=4909 organism=Pichia kudriavzevii strain= label=Pichia kudriavzevii ==> spp='Rhodotorula mucilaginosa' acc='GCA_016584205.1' taxid='5537' [PATH A] assembly accession (GCA_016584205.1); fetching metadata via datasets taxid=5537 organism=Rhodotorula mucilaginosa strain= label=Rhodotorula mucilaginosa ==> spp='Saccharomyces cerevisiae' acc='GCF_000146045.2' taxid='4932' [PATH A] assembly accession (GCF_000146045.2); fetching metadata via datasets taxid=4932 organism=Saccharomyces cerevisiae strain= label=Saccharomyces cerevisiae ==> spp='Yarrowia lipolytica' acc='GCF_000002525.2' taxid='4952' [PATH A] assembly accession (GCF_000002525.2); fetching metadata via datasets taxid=4952 organism=Yarrowia lipolytica strain= label=Yarrowia lipolytica ==> spp='Malassezia globosa' acc='GCF_000181695.2' taxid='76773' [PATH A] assembly accession (GCF_000181695.2); fetching metadata via datasets taxid=76773 organism=Malassezia globosa strain= label=Malassezia globosa ==> spp='Malassezia restricta' acc='GCF_003290485.1' taxid='76775' [PATH A] assembly accession (GCF_003290485.1); fetching metadata via datasets taxid=76775 organism=Malassezia restricta strain= label=Malassezia restricta ==> spp='Malassezia sympodialis' acc='GCF_000349305.1' taxid='76777' [PATH A] assembly accession (GCF_000349305.1); fetching metadata via datasets taxid=76777 organism=Malassezia sympodialis strain= label=Malassezia sympodialis ==> spp='Entamoeba histolytica' acc='GCF_000208925.1' taxid='5759' [PATH A] assembly accession (GCF_000208925.1); fetching metadata via datasets taxid=5759 organism=Entamoeba histolytica strain= label=Entamoeba histolytica ==> spp='Entamoeba nuttalli' acc='GCF_000257125.1' taxid='412467' [PATH A] assembly accession (GCF_000257125.1); fetching metadata via datasets taxid=412467 organism=Entamoeba nuttalli strain= label=Entamoeba nuttalli ==> spp='Alphacoronavirus 1' acc='' taxid='693997' [PATH B] taxid-based lookup taxid=693997 organism=Alphacoronavirus 1 label=Alphacoronavirus 1 ==> spp='Alphapapillomavirus 10' acc='' taxid='333754' [PATH B] taxid-based lookup taxid=333754 organism=Alphapapillomavirus 10 label=Alphapapillomavirus 10 ==> spp='Alphapapillomavirus 14' acc='' taxid='931244' [PATH B] taxid-based lookup taxid=931244 organism=Alphapapillomavirus 14 label=Alphapapillomavirus 14 ==> spp='Alphapapillomavirus 2' acc='' taxid='337039' [PATH B] taxid-based lookup taxid=337039 organism=Alphapapillomavirus 2 label=Alphapapillomavirus 2 ==> spp='Alphapapillomavirus 4' acc='' taxid='337043' [PATH B] taxid-based lookup taxid=337043 organism=Alphapapillomavirus 4 label=Alphapapillomavirus 4 ==> spp='Alphapapillomavirus 9' acc='' taxid='337041' [PATH B] taxid-based lookup taxid=337041 organism=Alphapapillomavirus 9 label=Alphapapillomavirus 9 ==> spp='Alphapolyomavirus octihominis' acc='' taxid='1891727' [PATH B] taxid-based lookup taxid=1891727 organism=Alphapolyomavirus octihominis label=Alphapolyomavirus octihominis ==> spp='Alphapolyomavirus quintihominis' acc='' taxid='1891726' [PATH B] taxid-based lookup taxid=1891726 organism=Alphapolyomavirus quintihominis label=Alphapolyomavirus quintihominis ==> spp='Anellovirus cya/2019' acc='MT501646' taxid='2749445' [PATH A] accession-based fetch taxid=2749445 organism=Anellovirus cya/2019 label=Anellovirus cya/2019 ==> spp='Anellovirus cyb/2019' acc='MT501649' taxid='2749446' [PATH A] accession-based fetch taxid=2749446 organism=Anellovirus cyb/2019 label=Anellovirus cyb/2019 ==> spp='Anellovirus cyc/2019' acc='MT501653' taxid='2749447' [PATH A] accession-based fetch taxid=2749447 organism=Anellovirus cyc/2019 label=Anellovirus cyc/2019 ==> spp='Astrovirus MLB3' acc='' taxid='1247114' [PATH B] taxid-based lookup taxid=1247114 organism=Astrovirus MLB3 label=Astrovirus MLB3 ==> spp='Avian coronavirus' acc='' taxid='694014' [PATH B] taxid-based lookup taxid=694014 organism=Avian coronavirus label=Avian coronavirus ==> spp='Betacoronavirus' acc='' taxid='694002' [PATH B] taxid-based lookup taxid=694002 organism=Betacoronavirus label=Betacoronavirus ==> spp='Betacoronavirus 1' acc='' taxid='694003' [PATH B] taxid-based lookup taxid=694003 organism=Betacoronavirus 1 label=Betacoronavirus 1 ==> spp='Betapapillomavirus 1' acc='' taxid='337051' [PATH B] taxid-based lookup taxid=337051 organism=Betapapillomavirus 1 label=Betapapillomavirus 1 ==> spp='Betapapillomavirus 2' acc='' taxid='333924' [PATH B] taxid-based lookup taxid=333924 organism=Betapapillomavirus 2 label=Betapapillomavirus 2 ==> spp='Betapapillomavirus 3' acc='' taxid='334207' [PATH B] taxid-based lookup taxid=334207 organism=Betapapillomavirus 3 label=Betapapillomavirus 3 ==> spp='Betapapillomavirus 4' acc='' taxid='334208' [PATH B] taxid-based lookup taxid=334208 organism=Betapapillomavirus 4 label=Betapapillomavirus 4 ==> spp='Betapolyomavirus hominis' acc='' taxid='1891762' [PATH B] taxid-based lookup taxid=1891762 organism=Betapolyomavirus hominis label=Betapolyomavirus hominis ==> spp='Betapolyomavirus quartihominis' acc='' taxid='1891765' [PATH B] taxid-based lookup taxid=1891765 organism=Betapolyomavirus quartihominis label=Betapolyomavirus quartihominis ==> spp='Betapolyomavirus secuhominis' acc='' taxid='1891763' [PATH B] taxid-based lookup taxid=1891763 organism=Betapolyomavirus secuhominis label=Betapolyomavirus secuhominis ==> spp='Betapolyomavirus tertihominis' acc='' taxid='1891764' [PATH B] taxid-based lookup taxid=1891764 organism=Betapolyomavirus tertihominis label=Betapolyomavirus tertihominis ==> spp='Bocaparvovirus primate1' acc='' taxid='3052040' [PATH B] taxid-based lookup taxid=3052040 organism=Bocaparvovirus primate1 label=Bocaparvovirus primate1 ==> spp='Bocaparvovirus primate2' acc='' taxid='3052041' [PATH B] taxid-based lookup taxid=3052041 organism=Bocaparvovirus primate2 label=Bocaparvovirus primate2 ==> spp='Brisavirus' acc='' taxid='2732654' [PATH B] taxid-based lookup taxid=2732654 organism=Brisavirus label=Brisavirus ==> spp='Cardiovirus A' acc='' taxid='1821749' [PATH B] taxid-based lookup taxid=1821749 organism=Cardiovirus A label=Cardiovirus A ==> spp='Cardiovirus B' acc='' taxid='1821750' [PATH B] taxid-based lookup taxid=1821750 organism=Cardiovirus B label=Cardiovirus B ==> spp='Cardiovirus D' acc='' taxid='2734523' [PATH B] taxid-based lookup taxid=2734523 organism=Cardiovirus D label=Cardiovirus D ==> spp='Chikungunya virus' acc='' taxid='37124' [PATH B] taxid-based lookup taxid=37124 organism=Chikungunya virus label=Chikungunya virus ==> spp='Circoviridae sp.' acc='' taxid='1954248' [PATH B] taxid-based lookup taxid=1954248 organism=Circoviridae sp. label=Circoviridae sp. ==> spp='Coronavirus cya-BetaCoV/2019' acc='' taxid='2749448' [PATH B] taxid-based lookup taxid=2749448 organism=Coronavirus cya-BetaCoV/2019 label=Coronavirus cya-BetaCoV/2019 ==> spp='Coronavirus cyb-BetaCoV/2019' acc='' taxid='2749449' [PATH B] taxid-based lookup taxid=2749449 organism=Coronavirus cyb-BetaCoV/2019 label=Coronavirus cyb-BetaCoV/2019 ==> spp='Coronavirus cyc-BetaCoV/2019' acc='' taxid='2749450' [PATH B] taxid-based lookup taxid=2749450 organism=Coronavirus cyc-BetaCoV/2019 label=Coronavirus cyc-BetaCoV/2019 ==> spp='Cowpox virus' acc='' taxid='10243' [PATH B] taxid-based lookup taxid=10243 organism=Cowpox virus label=Cowpox virus ==> spp='Coxsackievirus A' acc='' taxid='138948' [PATH B] taxid-based lookup taxid=138948 organism=Enterovirus A label=Coxsackievirus A ==> spp='Enterovirus 71' acc='HQ400942' taxid='39054' [PATH A] accession-based fetch taxid=1006008 organism=Human enterovirus 71 HZ08/Hangzhou/2008 label=Enterovirus 71 ==> spp='Cyclovirus sp.' acc='' taxid='1983780' [PATH B] taxid-based lookup taxid=1983780 organism=Cyclovirus sp. label=Cyclovirus sp. ==> spp='Cytomegalovirus humanbeta5' acc='' taxid='3050295' [PATH B] taxid-based lookup taxid=3050295 organism=Cytomegalovirus humanbeta5 label=Cytomegalovirus humanbeta5 ==> spp='Deltapolyomavirus decihominis' acc='' taxid='1208309' [PATH B] taxid-based lookup taxid=1208309 organism=Deltapolyomavirus decihominis label=Deltapolyomavirus decihominis ==> spp='Deltapolyomavirus undecihominis' acc='' taxid='1891745' [PATH B] taxid-based lookup taxid=1891745 organism=Deltapolyomavirus undecihominis label=Deltapolyomavirus undecihominis ==> spp='Dengue virus' acc='' taxid='12637' [PATH B] taxid-based lookup taxid=12637 organism=Dengue virus label=Dengue virus ==> spp='Dependoparvovirus primate1' acc='' taxid='1511891' [PATH B] taxid-based lookup taxid=1511891 organism=Dependoparvovirus primate1 label=Dependoparvovirus primate1 ==> spp='Ebola virus' acc='' taxid='1570291' [PATH B] taxid-based lookup taxid=1570291 organism=Ebola virus label=Ebola virus ==> spp='Enterovirus A' acc='' taxid='138948' [PATH B] taxid-based lookup taxid=138948 organism=Enterovirus A label=Enterovirus A ==> spp='Enterovirus B' acc='' taxid='138949' [PATH B] taxid-based lookup taxid=138949 organism=Enterovirus B label=Enterovirus B ==> spp='Enterovirus C' acc='' taxid='138950' [PATH B] taxid-based lookup taxid=138950 organism=Enterovirus C label=Enterovirus C ==> spp='Enterovirus D' acc='' taxid='138951' [PATH B] taxid-based lookup taxid=138951 organism=Enterovirus D label=Enterovirus D ==> spp='Enterovirus sp.' acc='' taxid='47681' [PATH B] taxid-based lookup taxid=47681 organism=Enterovirus sp. label=Enterovirus sp. ==> spp='Enteroviruses' acc='' taxid='12059' [PATH B] taxid-based lookup taxid=12059 organism=Enterovirus label=Enteroviruses ==> spp='Epstein-Barr virus' acc='NC_007605' taxid='10376' [PATH A] accession-based fetch taxid=10376 organism=Human gammaherpesvirus 4 label=Epstein-Barr virus ==> spp='Erythroparvovirus primate1' acc='' taxid='3052189' [PATH B] taxid-based lookup taxid=3052189 organism=Erythroparvovirus primate1 label=Erythroparvovirus primate1 ==> spp='Gammapapillomavirus 1' acc='' taxid='333926' [PATH B] taxid-based lookup taxid=333926 organism=Gammapapillomavirus 1 label=Gammapapillomavirus 1 ==> spp='Gammapapillomavirus 11' acc='' taxid='1513256' [PATH B] taxid-based lookup taxid=1513256 organism=Gammapapillomavirus 11 label=Gammapapillomavirus 11 ==> spp='Gammapapillomavirus 12' acc='' taxid='1513257' [PATH B] taxid-based lookup taxid=1513257 organism=Gammapapillomavirus 12 label=Gammapapillomavirus 12 ==> spp='Gammapapillomavirus 22' acc='' taxid='1961679' [PATH B] taxid-based lookup taxid=1961679 organism=Gammapapillomavirus 22 label=Gammapapillomavirus 22 ==> spp='Gammapapillomavirus 24' acc='' taxid='1961681' [PATH B] taxid-based lookup taxid=1961681 organism=Gammapapillomavirus 24 label=Gammapapillomavirus 24 ==> spp='Gammapapillomavirus 3' acc='' taxid='333929' [PATH B] taxid-based lookup taxid=333929 organism=Gammapapillomavirus 3 label=Gammapapillomavirus 3 ==> spp='Gemycircularvirus CN-GZ1' acc='MH427642' taxid='2583509' [PATH A] accession-based fetch taxid=2583509 organism=Gemycircularvirus CN-GZ1 label=Gemycircularvirus CN-GZ1 ==> spp='Gemycircularvirus HV-GcV1' acc='' taxid='1862824' [PATH B] taxid-based lookup taxid=1862824 organism=Gemycircularvirus HV-GcV1 label=Gemycircularvirus HV-GcV1 ==> spp='Gemycircularvirus sp.' acc='' taxid='1983771' [PATH B] taxid-based lookup taxid=1983771 organism=Gemycircularvirus sp. label=Gemycircularvirus sp. ==> spp='Haseki tick virus' acc='MW808978' taxid='2712269' [PATH A] accession-based fetch taxid=2712269 organism=Haseki tick virus label=Haseki tick virus ==> spp='Hendra henipavirus' acc='' taxid='3052223' [PATH B] taxid-based lookup taxid=3052223 organism=Henipavirus hendraense label=Hendra henipavirus ==> spp='Henipavirus nipahense' acc='' taxid='3052225' [PATH B] taxid-based lookup taxid=3052225 organism=Henipavirus nipahense label=Henipavirus nipahense ==> spp='Hepatitis A virus' acc='NC_001489' taxid='12092' [PATH A] accession-based fetch taxid=12092 organism=Hepatovirus A label=Hepatitis A virus ==> spp='Hepatitis B virus' acc='' taxid='10407' [PATH B] taxid-based lookup taxid=10407 organism=Hepatitis B virus label=Hepatitis B virus ==> spp='Hepatitis C virus' acc='' taxid='3052230' [PATH B] taxid-based lookup taxid=3052230 organism=Orthohepacivirus hominis label=Hepatitis C virus ==> spp='Herpes simplex virus 1' acc='' taxid='10298' [PATH B] taxid-based lookup taxid=10298 organism=Human alphaherpesvirus 1 label=Herpes simplex virus 1 ==> spp='Herpes simplex virus 2' acc='' taxid='10310' [PATH B] taxid-based lookup taxid=10310 organism=Human alphaherpesvirus 2 label=Herpes simplex virus 2 ==> spp='Human adenovirus sp.' acc='' taxid='1907210' [PATH B] taxid-based lookup taxid=1907210 organism=Human adenovirus sp. label=Human adenovirus sp. ==> spp='Human alphaherpesvirus 1' acc='' taxid='10298' [PATH B] taxid-based lookup taxid=10298 organism=Human alphaherpesvirus 1 label=Human alphaherpesvirus 1 ==> spp='Human alphaherpesvirus 2' acc='' taxid='10310' [PATH B] taxid-based lookup taxid=10310 organism=Human alphaherpesvirus 2 label=Human alphaherpesvirus 2 ==> spp='Human alphaherpesvirus 3' acc='' taxid='10335' [PATH B] taxid-based lookup taxid=10335 organism=Human alphaherpesvirus 3 label=Human alphaherpesvirus 3 ==> spp='Human associated cyclovirus 10' acc='' taxid='2038728' [PATH B] taxid-based lookup taxid=2038728 organism=Human associated cyclovirus 10 label=Human associated cyclovirus 10 ==> spp='Human betaherpesvirus 5' acc='' taxid='10359' [PATH B] taxid-based lookup taxid=10359 organism=Human betaherpesvirus 5 label=Human betaherpesvirus 5 ==> spp='Human betaherpesvirus 6' acc='KY315532' taxid='10368' [PATH A] accession-based fetch taxid=10368 organism=Human betaherpesvirus 6 label=Human betaherpesvirus 6 ==> spp='Human betaherpesvirus 6A' acc='' taxid='32603' [PATH B] taxid-based lookup taxid=32603 organism=Human betaherpesvirus 6A label=Human betaherpesvirus 6A ==> spp='Human betaherpesvirus 6B' acc='' taxid='32604' [PATH B] taxid-based lookup taxid=32604 organism=Human betaherpesvirus 6B label=Human betaherpesvirus 6B ==> spp='Human betaherpesvirus 7' acc='' taxid='10372' [PATH B] taxid-based lookup taxid=10372 organism=Human betaherpesvirus 7 label=Human betaherpesvirus 7 ==> spp='Human bocavirus' acc='NC_007455' taxid='329641' [PATH A] accession-based fetch taxid=3052040 organism=Bocaparvovirus primate1 label=Human bocavirus ==> spp='Human coronavirus' acc='NC_002645' taxid='694448' [PATH A] accession-based fetch taxid=11137 organism=Human coronavirus 229E label=Human coronavirus ==> spp='Human coronavirus 229E' acc='' taxid='11137' [PATH B] taxid-based lookup taxid=11137 organism=Human coronavirus 229E label=Human coronavirus 229E ==> spp='Human coronavirus HKU1' acc='' taxid='290028' [PATH B] taxid-based lookup taxid=290028 organism=Human coronavirus HKU1 label=Human coronavirus HKU1 ==> spp='Human coronavirus KUMC22-3' acc='PP868300' taxid='3161185' [PATH A] accession-based fetch taxid=3161185 organism=Human coronavirus KUMC22-3 label=Human coronavirus KUMC22-3 ==> spp='Human coronavirus NL63' acc='' taxid='277944' [PATH B] taxid-based lookup taxid=277944 organism=Human coronavirus NL63 label=Human coronavirus NL63 ==> spp='Human cytomegalovirus' acc='NC_001347' taxid='10359' [PATH A] accession-based fetch taxid=10359 organism=Human herpesvirus 5 label=Human cytomegalovirus ==> spp='Human enterovirus' acc='MH933845' taxid='1193974' [PATH A] accession-based fetch taxid=1193974 organism=Human enterovirus label=Human enterovirus ==> spp='human gammaherpesvirus 4' acc='' taxid='10376' [PATH B] taxid-based lookup taxid=10376 organism=human gammaherpesvirus 4 label=human gammaherpesvirus 4 ==> spp='Human gammaherpesvirus 8' acc='' taxid='37296' [PATH B] taxid-based lookup taxid=37296 organism=Human gammaherpesvirus 8 label=Human gammaherpesvirus 8 ==> spp='Human herpesvirus 1' acc='NC_001806' taxid='10298' [PATH A] accession-based fetch taxid=10298 organism=Human alphaherpesvirus 1 label=Human herpesvirus 1 ==> spp='Human herpesvirus 6' acc='NC_001664' taxid='10368' [PATH A] accession-based fetch taxid=32603 organism=Human betaherpesvirus 6A label=Human herpesvirus 6 ==> spp='Human herpesvirus 7' acc='NC_001716' taxid='10372' [PATH A] accession-based fetch taxid=10372 organism=Human betaherpesvirus 7 label=Human herpesvirus 7 ==> spp='Human herpesvirus 8' acc='NC_009333' taxid='37296' [PATH A] accession-based fetch taxid=37296 organism=Human gammaherpesvirus 8 label=Human herpesvirus 8 ==> spp='Human immunodeficiency virus' acc='' taxid='12721' [PATH B] taxid-based lookup taxid=12721 organism=Human immunodeficiency virus label=Human immunodeficiency virus ==> spp='Human immunodeficiency virus 1' acc='' taxid='11676' [PATH B] taxid-based lookup taxid=11676 organism=Human immunodeficiency virus 1 label=Human immunodeficiency virus 1 ==> spp='Human mastadenovirus A' acc='' taxid='129875' [PATH B] taxid-based lookup taxid=129875 organism=Human mastadenovirus A label=Human mastadenovirus A ==> spp='Human mastadenovirus B' acc='' taxid='108098' [PATH B] taxid-based lookup taxid=108098 organism=Human mastadenovirus B label=Human mastadenovirus B ==> spp='Human mastadenovirus C' acc='' taxid='129951' [PATH B] taxid-based lookup taxid=129951 organism=Human mastadenovirus C label=Human mastadenovirus C ==> spp='Human mastadenovirus D' acc='' taxid='130310' [PATH B] taxid-based lookup taxid=130310 organism=Human mastadenovirus D label=Human mastadenovirus D ==> spp='Human mastadenovirus E' acc='' taxid='130308' [PATH B] taxid-based lookup taxid=130308 organism=Human mastadenovirus E label=Human mastadenovirus E ==> spp='Human mastadenovirus F' acc='' taxid='130309' [PATH B] taxid-based lookup taxid=130309 organism=Human mastadenovirus F label=Human mastadenovirus F ==> spp='Human metapneumovirus' acc='NC_004148' taxid='162145' [PATH A] accession-based fetch taxid=162145 organism=Human metapneumovirus label=Human metapneumovirus ==> spp='Human orthopneumovirus' acc='' taxid='11250' [PATH B] taxid-based lookup taxid=11250 organism=human respiratory syncytial virus label=Human orthopneumovirus ==> spp='Human orthorubulavirus 2' acc='' taxid='2560525' [PATH B] taxid-based lookup taxid=2560525 organism=Human orthorubulavirus 2 label=Human orthorubulavirus 2 ==> spp='Human orthorubulavirus 4' acc='' taxid='2560526' [PATH B] taxid-based lookup taxid=2560526 organism=Human orthorubulavirus 4 label=Human orthorubulavirus 4 ==> spp='Human papillomavirus' acc='NC_001526' taxid='10566' [PATH A] accession-based fetch taxid=333760 organism=Human papillomavirus 16 label=Human papillomavirus ==> spp='Human parechovirus 1B' acc='OR728261' taxid='3092269' [PATH A] accession-based fetch taxid=3092269 organism=Human parechovirus 1B label=Human parechovirus 1B ==> spp='Human parvovirus B19' acc='NC_000883' taxid='10798' [PATH A] accession-based fetch taxid=10798 organism=Human parvovirus B19 label=Human parvovirus B19 ==> spp='Human picobirnavirus' acc='' taxid='145856' [PATH B] taxid-based lookup taxid=145856 organism=Human picobirnavirus label=Human picobirnavirus ==> spp='Human polyomavirus 6' acc='' taxid='746830' [PATH B] taxid-based lookup taxid=746830 organism=Human polyomavirus 6 label=Human polyomavirus 6 ==> spp='Human polyomavirus 9' acc='' taxid='943908' [PATH B] taxid-based lookup taxid=943908 organism=Human polyomavirus 9 label=Human polyomavirus 9 ==> spp='Human PoSCV5-like circular virus' acc='' taxid='1965018' [PATH B] taxid-based lookup taxid=1965018 organism=Human PoSCV5-like circular virus label=Human PoSCV5-like circular virus ==> spp='Human respiratory circovirus-like 1' acc='MK674279' taxid='2714898' [PATH A] accession-based fetch taxid=2714898 organism=Human respiratory circovirus-like 1 label=Human respiratory circovirus-like 1 ==> spp='Human respiratory circovirus-like 2' acc='MK674280' taxid='2714899' [PATH A] accession-based fetch taxid=2714899 organism=Human respiratory circovirus-like 2 label=Human respiratory circovirus-like 2 ==> spp='Human respiratory circular DNA virus' acc='MN535745' taxid='2057509' [PATH A] accession-based fetch taxid=2057509 organism=Human respiratory circular DNA virus label=Human respiratory circular DNA virus ==> spp='human respiratory syncytial virus' acc='' taxid='11250' [PATH B] taxid-based lookup taxid=11250 organism=human respiratory syncytial virus label=human respiratory syncytial virus ==> spp='Human respirovirus 1' acc='' taxid='12730' [PATH B] taxid-based lookup taxid=12730 organism=Human respirovirus 1 label=Human respirovirus 1 ==> spp='Human respirovirus 3' acc='' taxid='11216' [PATH B] taxid-based lookup taxid=11216 organism=Human respirovirus 3 label=Human respirovirus 3 ==> spp='Human rhinovirus A, B, C (HRV) ECDC' acc='NC_001617' taxid='147711' [PATH A] accession-based fetch taxid=147711 organism=Rhinovirus A label=Human rhinovirus A, B, C (HRV) ECDC ==> spp='Human rhinovirus sp.' acc='X01087' taxid='169066' [PATH A] accession-based fetch taxid=169066 organism=Human rhinovirus sp. label=Human rhinovirus sp. ==> spp='Influenza A virus' acc='' taxid='11320' [PATH B] taxid-based lookup taxid=11320 organism=Influenza A virus label=Influenza A virus ==> spp='Influenza B virus' acc='' taxid='11520' [PATH B] taxid-based lookup taxid=11520 organism=Influenza B virus label=Influenza B virus ==> spp='Influenza C virus' acc='GCF_000856665' taxid='11552' [PATH A] assembly accession (GCF_000856665); fetching metadata via datasets taxid=11552 organism=Influenza C virus strain= label=Influenza C virus ==> spp='JC polyomavirus' acc='NC_001699' taxid='10632' [PATH A] accession-based fetch taxid=10632 organism=JC polyomavirus label=JC polyomavirus ==> spp='KI Polyomavirus' acc='NC_009238' taxid='1891764' [PATH A] accession-based fetch taxid=1891764 organism=Betapolyomavirus tertihominis label=KI Polyomavirus ==> spp='Lymphocryptovirus humangamma4' acc='' taxid='3050299' [PATH B] taxid-based lookup taxid=3050299 organism=Lymphocryptovirus humangamma4 label=Lymphocryptovirus humangamma4 ==> spp='Lyssavirus rabies' acc='' taxid='11292' [PATH B] taxid-based lookup taxid=11292 organism=Lyssavirus rabies label=Lyssavirus rabies ==> spp='Mammarenavirus choriomeningitidis' acc='' taxid='3052303' [PATH B] taxid-based lookup taxid=3052303 organism=Mammarenavirus choriomeningitidis label=Mammarenavirus choriomeningitidis ==> spp='Mammarenavirus lassaense' acc='' taxid='3052310' [PATH B] taxid-based lookup taxid=3052310 organism=Mammarenavirus lassaense label=Mammarenavirus lassaense ==> spp='Mastadenovirus sp.' acc='' taxid='2050578' [PATH B] taxid-based lookup taxid=2050578 organism=Mastadenovirus sp. label=Mastadenovirus sp. ==> spp='Measles morbillivirus' acc='' taxid='11234' [PATH B] taxid-based lookup taxid=11234 organism=Measles morbillivirus label=Measles morbillivirus ==> spp='Merkel cell polyomavirus' acc='NC_010277' taxid='493803' [PATH A] accession-based fetch taxid=493803 organism=Merkel cell polyomavirus label=Merkel cell polyomavirus ==> spp='MERS coronavirus' acc='NC_019843' taxid='1335626' [PATH A] accession-based fetch taxid=1335626 organism=Middle East respiratory syndrome-related coronavirus label=MERS coronavirus ==> spp='Metapneumovirus hominis' acc='' taxid='3048148' [PATH B] taxid-based lookup taxid=3048148 organism=Metapneumovirus hominis label=Metapneumovirus hominis ==> spp='Middle East respiratory syndrome-related coronavirus' acc='' taxid='1335626' [PATH B] taxid-based lookup taxid=1335626 organism=Middle East respiratory syndrome-related coronavirus label=Middle East respiratory syndrome-related coronavirus ==> spp='Monkeypox virus' acc='' taxid='10244' [PATH B] taxid-based lookup taxid=10244 organism=Monkeypox virus label=Monkeypox virus ==> spp='Morbillivirus hominis' acc='' taxid='3052345' [PATH B] taxid-based lookup taxid=3052345 organism=Morbillivirus hominis label=Morbillivirus hominis ==> spp='Mumps orthorubulavirus' acc='' taxid='2560602' [PATH B] taxid-based lookup taxid=2560602 organism=Mumps orthorubulavirus label=Mumps orthorubulavirus ==> spp='Nipah virus' acc='NC_002728' taxid='3052225' [PATH A] accession-based fetch taxid=3052225 organism=Henipavirus nipahense label=Nipah virus ==> spp='Norovirus' acc='' taxid='142786' [PATH B] taxid-based lookup taxid=142786 organism=Norovirus label=Norovirus ==> spp='Norwalk virus' acc='' taxid='11983' [PATH B] taxid-based lookup taxid=11983 organism=Norwalk virus label=Norwalk virus ==> spp='Orthoflavivirus nilense' acc='' taxid='3048448' [PATH B] taxid-based lookup taxid=3048448 organism=Orthoflavivirus nilense label=Orthoflavivirus nilense ==> spp='Orthohantavirus puumalaense' acc='' taxid='3052493' [PATH B] taxid-based lookup taxid=3052493 organism=Orthohantavirus puumalaense label=Orthohantavirus puumalaense ==> spp='Orthomarburgvirus marburgense' acc='' taxid='3052505' [PATH B] taxid-based lookup taxid=3052505 organism=Orthomarburgvirus marburgense label=Orthomarburgvirus marburgense ==> spp='Orthopicobirnavirus hominis' acc='' taxid='2956252' [PATH B] taxid-based lookup taxid=2956252 organism=Orthopicobirnavirus hominis label=Orthopicobirnavirus hominis ==> spp='Orthopneumovirus hominis' acc='' taxid='3049954' [PATH B] taxid-based lookup taxid=3049954 organism=Orthopneumovirus hominis label=Orthopneumovirus hominis ==> spp='Parechovirus A' acc='' taxid='1803956' [PATH B] taxid-based lookup taxid=1803956 organism=Parechovirus A label=Parechovirus A ==> spp='Pegivirus hominis' acc='' taxid='3052608' [PATH B] taxid-based lookup taxid=3052608 organism=Pegivirus hominis label=Pegivirus hominis ==> spp='Poliovirus' acc='NC_002058' taxid='138950' [PATH A] accession-based fetch taxid=138950 organism=Enterovirus C label=Poliovirus ==> spp='Polyomavirus' acc='' taxid='36362' [PATH B] taxid-based lookup taxid=36362 organism=Polyomavirus sp. label=Polyomavirus ==> spp='Primate T-lymphotropic virus 1' acc='' taxid='194440' [PATH B] taxid-based lookup taxid=194440 organism=Primate T-lymphotropic virus 1 label=Primate T-lymphotropic virus 1 ==> spp='Protoparvovirus sp.' acc='PQ310103' taxid='1987106' [PATH A] accession-based fetch taxid=1987106 organism=Protoparvovirus sp. label=Protoparvovirus sp. ==> spp='human respiratory syncytial virus' acc='NC_001781' taxid='11250' [PATH A] accession-based fetch taxid=11250 organism=human respiratory syncytial virus label=human respiratory syncytial virus ==> spp='Respirovirus laryngotracheitidis' acc='' taxid='3049952' [PATH B] taxid-based lookup taxid=3049952 organism=Respirovirus laryngotracheitidis label=Respirovirus laryngotracheitidis ==> spp='Respirovirus pneumoniae' acc='' taxid='3049953' [PATH B] taxid-based lookup taxid=3049953 organism=Respirovirus pneumoniae label=Respirovirus pneumoniae ==> spp='Rhinovirus A' acc='' taxid='147711' [PATH B] taxid-based lookup taxid=147711 organism=Rhinovirus A label=Rhinovirus A ==> spp='Rhinovirus B' acc='' taxid='147712' [PATH B] taxid-based lookup taxid=147712 organism=Rhinovirus B label=Rhinovirus B ==> spp='Rhinovirus C' acc='' taxid='463676' [PATH B] taxid-based lookup taxid=463676 organism=Rhinovirus C label=Rhinovirus C ==> spp='Roseolovirus humanbeta7' acc='' taxid='3050298' [PATH B] taxid-based lookup taxid=3050298 organism=Roseolovirus humanbeta7 label=Roseolovirus humanbeta7 ==> spp='Rotavirus A' acc='' taxid='28875' [PATH B] taxid-based lookup taxid=28875 organism=Rotavirus A label=Rotavirus A ==> spp='Rubella virus' acc='NC_001545' taxid='11041' [PATH A] accession-based fetch taxid=11041 organism=Rubella virus label=Rubella virus ==> spp='Salivirus A' acc='' taxid='1330524' [PATH B] taxid-based lookup taxid=1330524 organism=Salivirus A label=Salivirus A ==> spp='Severe acute respiratory syndrome coronavirus' acc='' taxid='2901879' [PATH B] taxid-based lookup taxid=2901879 organism=Severe acute respiratory syndrome coronavirus label=Severe acute respiratory syndrome coronavirus ==> spp='Simian foamy virus' acc='' taxid='11642' [PATH B] taxid-based lookup taxid=11642 organism=Simian foamy virus label=Simian foamy virus ==> spp='Simplexvirus humanalpha1' acc='' taxid='3050292' [PATH B] taxid-based lookup taxid=3050292 organism=Simplexvirus humanalpha1 label=Simplexvirus humanalpha1 ==> spp='Small anellovirus' acc='' taxid='393049' [PATH B] taxid-based lookup taxid=393049 organism=Small anellovirus label=Small anellovirus ==> spp='Variola virus' acc='NC_001611' taxid='10255' [PATH A] accession-based fetch taxid=10255 organism=Variola virus label=Variola virus ==> spp='St. Louis encephalitis virus' acc='' taxid='11080' [PATH B] taxid-based lookup taxid=11080 organism=St. Louis encephalitis virus label=St. Louis encephalitis virus ==> spp='Statovirus sp.' acc='OR367719' taxid='2747383' [PATH A] accession-based fetch taxid=2747383 organism=Statovirus sp. label=Statovirus sp. ==> spp='Tetraparvovirus primate1' acc='' taxid='3052770' [PATH B] taxid-based lookup taxid=3052770 organism=Tetraparvovirus primate1 label=Tetraparvovirus primate1 ==> spp='Torque teno midi virus' acc='MN165095' taxid='432261' [PATH A] accession-based fetch taxid=432261 organism=Torque teno midi virus label=Torque teno midi virus ==> spp='Torque teno mini virus' acc='' taxid='93678' [PATH B] taxid-based lookup taxid=93678 organism=TTV-like mini virus label=Torque teno mini virus ==> spp='Torque teno mini virus ALA22' acc='' taxid='1535290' [PATH B] taxid-based lookup taxid=1535290 organism=Torque teno mini virus ALA22 label=Torque teno mini virus ALA22 ==> spp='Torque teno mini virus ALH8' acc='' taxid='1535291' [PATH B] taxid-based lookup taxid=1535291 organism=Torque teno mini virus ALH8 label=Torque teno mini virus ALH8 ==> spp='Torque teno virus' acc='' taxid='68887' [PATH B] taxid-based lookup taxid=68887 organism=Torque teno virus label=Torque teno virus ==> spp='Torque teno virus 13' acc='' taxid='687352' [PATH B] taxid-based lookup taxid=687352 organism=Torque teno virus 13 label=Torque teno virus 13 ==> spp='Torque teno virus 16' acc='' taxid='687355' [PATH B] taxid-based lookup taxid=687355 organism=Torque teno virus 16 label=Torque teno virus 16 ==> spp='Torque teno virus 24' acc='' taxid='687363' [PATH B] taxid-based lookup taxid=687363 organism=Torque teno virus 24 label=Torque teno virus 24 ==> spp='Torque teno virus 5' acc='' taxid='687344' [PATH B] taxid-based lookup taxid=687344 organism=Torque teno virus 5 label=Torque teno virus 5 ==> spp='TTV-like mini virus' acc='' taxid='93678' [PATH B] taxid-based lookup taxid=93678 organism=TTV-like mini virus label=TTV-like mini virus ==> spp='Vaccinia virus' acc='' taxid='10245' [PATH B] taxid-based lookup taxid=10245 organism=Orthopoxvirus vaccinia label=Vaccinia virus ==> spp='Varicella-zoster virus' acc='NC_001348' taxid='10335' [PATH A] accession-based fetch taxid=10335 organism=Human alphaherpesvirus 3 label=Varicella-zoster virus ==> spp='Varicellovirus humanalpha3' acc='' taxid='3050294' [PATH B] taxid-based lookup taxid=3050294 organism=Varicellovirus humanalpha3 label=Varicellovirus humanalpha3 ==> spp='Vesiculovirus chandipura' acc='' taxid='1972576' [PATH B] taxid-based lookup taxid=1972576 organism=Vesiculovirus chandipura label=Vesiculovirus chandipura ==> spp='Vientovirus' acc='' taxid='2732655' [PATH B] taxid-based lookup taxid=2732655 organism=Vientovirus label=Vientovirus ==> spp='Cytomegalovirus' acc='' taxid='10358' [PATH B] taxid-based lookup taxid=10358 organism=Cytomegalovirus label=Cytomegalovirus ==> spp='Zaire ebolavirus' acc='' taxid='186538' [PATH B] taxid-based lookup taxid=186538 organism=Zaire ebolavirus label=Zaire ebolavirus ==> spp='Zika virus' acc='' taxid='64320' [PATH B] taxid-based lookup taxid=64320 organism=Zika virus label=Zika virus ==> spp='Entamoeba-associated CRESS DNA virus 1' acc='MT293410.1' taxid='2766561' [PATH A] accession-based fetch taxid=2766561 organism=Entamoeba-associated CRESS DNA virus 1 label=Entamoeba-associated CRESS DNA virus 1 ==> spp='Entamoeba-associated CRESS DNA virus 1' acc='MT293411.1' taxid='2766561' [PATH A] accession-based fetch taxid=2766561 organism=Entamoeba-associated CRESS DNA virus 1 label=Entamoeba-associated CRESS DNA virus 1 ==> spp='Entamoeba-associated CRESS DNA virus 1' acc='MT293412.1' taxid='2766561' [PATH A] accession-based fetch taxid=2766561 organism=Entamoeba-associated CRESS DNA virus 1 label=Entamoeba-associated CRESS DNA virus 1 ==> spp='Nimphelosvirus isildur' acc='MT293413.1' taxid='2956228' [PATH A] accession-based fetch taxid=2956228 organism=Nimphelosvirus isildur label=Nimphelosvirus isildur ==> spp='Entamoeba-associated CRESS DNA virus 2' acc='MT293414.1' taxid='2766562' [PATH A] accession-based fetch taxid=2766562 organism=Entamoeba-associated CRESS DNA virus 2 label=Entamoeba-associated CRESS DNA virus 2 ==> spp='Entamoeba-associated CRESS DNA virus 2' acc='MT293415.1' taxid='2766562' [PATH A] accession-based fetch taxid=2766562 organism=Entamoeba-associated CRESS DNA virus 2 label=Entamoeba-associated CRESS DNA virus 2 ==> spp='Entamoeba-associated CRESS DNA virus 3' acc='MT293416.1' taxid='2766563' [PATH A] accession-based fetch taxid=2766563 organism=Entamoeba-associated CRESS DNA virus 3 label=Entamoeba-associated CRESS DNA virus 3 ==> spp='Entamoeba-associated CRESS DNA virus 3' acc='MT293417.1' taxid='2766563' [PATH A] accession-based fetch taxid=2766563 organism=Entamoeba-associated CRESS DNA virus 3 label=Entamoeba-associated CRESS DNA virus 3 ==> spp='Entamoeba-associated CRESS DNA virus 4' acc='MT293418.1' taxid='2766564' [PATH A] accession-based fetch taxid=2766564 organism=Entamoeba-associated CRESS DNA virus 4 label=Entamoeba-associated CRESS DNA virus 4 ==> spp='Entamoeba-associated CRESS DNA virus 4' acc='MT293419.1' taxid='2766564' [PATH A] accession-based fetch taxid=2766564 organism=Entamoeba-associated CRESS DNA virus 4 label=Entamoeba-associated CRESS DNA virus 4 ==> spp='Entamoeba-associated CRESS DNA virus 4' acc='MT293420.1' taxid='2766564' [PATH A] accession-based fetch taxid=2766564 organism=Entamoeba-associated CRESS DNA virus 4 label=Entamoeba-associated CRESS DNA virus 4 ==> spp='Human lung-associated brisavirus AA' acc='MK059754.1' taxid='2571075' [PATH A] accession-based fetch taxid=2571075 organism=Human lung-associated brisavirus AA label=Human lung-associated brisavirus AA ==> spp='Human respiratory-associated brisavirus' acc='MK059755.1' taxid='3116878' [PATH A] accession-based fetch taxid=3116878 organism=human respiratory-associated brisavirus label=Human respiratory-associated brisavirus ==> spp='Human lung-associated brisavirus MD' acc='MK059756.1' taxid='2571077' [PATH A] accession-based fetch taxid=2571077 organism=Human lung-associated brisavirus MD label=Human lung-associated brisavirus MD ==> spp='Human lung-associated brisavirus RC' acc='MK059757.1' taxid='2571078' [PATH A] accession-based fetch taxid=2571078 organism=Human lung-associated brisavirus RC label=Human lung-associated brisavirus RC ==> spp='Human oral-associated brisavirus YH' acc='MK059758.1' taxid='2571086' [PATH A] accession-based fetch taxid=2571086 organism=Human oral-associated brisavirus YH label=Human oral-associated brisavirus YH ==> spp='Human gut-associated brisavirus VW' acc='MK059759.1' taxid='2571073' [PATH A] accession-based fetch taxid=2571073 organism=Human gut-associated brisavirus VW label=Human gut-associated brisavirus VW ==> spp='Human lung-associated vientovirus AL' acc='MK059760.1' taxid='2571079' [PATH A] accession-based fetch taxid=2571079 organism=Human lung-associated vientovirus AL label=Human lung-associated vientovirus AL ==> spp='Human lung-associated vientovirus DC' acc='MK059761.1' taxid='2571080' [PATH A] accession-based fetch taxid=2571080 organism=Human lung-associated vientovirus DC label=Human lung-associated vientovirus DC ==> spp='Human lung-associated vientovirus ES' acc='MK059762.1' taxid='2571081' [PATH A] accession-based fetch taxid=2571081 organism=Human lung-associated vientovirus ES label=Human lung-associated vientovirus ES ==> spp='Human lung-associated vientovirus FB' acc='MK059763.1' taxid='2571082' [PATH A] accession-based fetch taxid=2571082 organism=Human lung-associated vientovirus FB label=Human lung-associated vientovirus FB ==> spp='Human lung-associated vientovirus JB' acc='MK059764.1' taxid='2571083' [PATH A] accession-based fetch taxid=2571083 organism=Human lung-associated vientovirus JB label=Human lung-associated vientovirus JB ==> spp='Human lung-associated vientovirus JY' acc='MK059765.1' taxid='2571084' [PATH A] accession-based fetch taxid=2571084 organism=Human lung-associated vientovirus JY label=Human lung-associated vientovirus JY ==> spp='Human lung-associated vientovirus LT' acc='MK059766.1' taxid='2571085' [PATH A] accession-based fetch taxid=2571085 organism=Human lung-associated vientovirus LT label=Human lung-associated vientovirus LT ==> spp='Human oral-associated vientovirus AV' acc='MK059767.1' taxid='2571087' [PATH A] accession-based fetch taxid=2571087 organism=Human oral-associated vientovirus AV label=Human oral-associated vientovirus AV ==> spp='Human oral-associated vientovirus EC' acc='MK059768.1' taxid='2571088' [PATH A] accession-based fetch taxid=2571088 organism=Human oral-associated vientovirus EC label=Human oral-associated vientovirus EC ==> spp='Human oral-associated vientovirus LZ' acc='MK059769.1' taxid='2571089' [PATH A] accession-based fetch taxid=2571089 organism=Human oral-associated vientovirus LZ label=Human oral-associated vientovirus LZ ==> spp='Human oral-associated vientovirus MC' acc='MK059770.1' taxid='2571090' [PATH A] accession-based fetch taxid=2571090 organism=Human oral-associated vientovirus MC label=Human oral-associated vientovirus MC ==> spp='Human oral-associated vientovirus XM' acc='MK059771.1' taxid='2571091' [PATH A] accession-based fetch taxid=2571091 organism=Human oral-associated vientovirus XM label=Human oral-associated vientovirus XM ==> spp='Human gut-associated vientovirus MW' acc='MK059772.1' taxid='2571074' [PATH A] accession-based fetch taxid=2571074 organism=Human gut-associated vientovirus MW label=Human gut-associated vientovirus MW ==> spp='Trichomonas vaginalis virus' acc='NC_003824.1' taxid='29256' [PATH A] accession-based fetch taxid=29256 organism=Trichomonas vaginalis virus label=Trichomonas vaginalis virus ==> spp='Malassezia sympodialis mycovirus' acc='MN812428' taxid='2766745' [PATH A] accession-based fetch taxid=2766745 organism=Malassezia sympodialis mycovirus label=Malassezia sympodialis mycovirus ==> spp='Malassezia sympodialis mycovirus' acc='MN831678' taxid='2766745' [PATH A] accession-based fetch taxid=2766745 organism=Malassezia sympodialis mycovirus label=Malassezia sympodialis mycovirus ==> spp='Totivirus nijyuroku' acc='MN603497' taxid='3432961' [PATH A] accession-based fetch taxid=3432961 organism=Totivirus nijyuroku label=Totivirus nijyuroku ==> spp='Malassezia restricta virus MrV40S' acc='MN603498' taxid='2766745' [PATH A] accession-based fetch taxid=2727864 organism=Malassezia restricta virus MrV40S label=Malassezia restricta virus MrV40S ==> spp='Pichia manshurica totivirus 1' acc='PV394617.1' taxid='3414160' [PATH A] accession-based fetch taxid=3414160 organism=Pichia manshurica totivirus 1 label=Pichia manshurica totivirus 1 ==> spp='Pichia manshurica totivirus 1' acc='PV394616.1' taxid='3414160' [PATH A] accession-based fetch taxid=3414160 organism=Pichia manshurica totivirus 1 label=Pichia manshurica totivirus 1 ==> spp='Pichia membranifaciens' acc='OL687555.1' taxid='2930201' [PATH A] accession-based fetch taxid=2930201 organism=Pichia membranifaciens virus L-A label=Pichia membranifaciens ==> spp='Pichia stipitis strain CBS 6054 endogenous virus' acc='GQ291320.1' taxid='3152141' [PATH A] accession-based fetch taxid=4924 organism=Scheffersomyces stipitis label=Pichia stipitis strain CBS 6054 endogenous virus ==> spp='Pichia stipitis strain CBS 6054 endogenous virus' acc='GQ291321.1' taxid='3152141' [PATH A] accession-based fetch taxid=4924 organism=Scheffersomyces stipitis label=Pichia stipitis strain CBS 6054 endogenous virus ==> spp='Saccharomyces cerevisiae virus L-A' acc='NC_003745.1' taxid='11008' [PATH A] accession-based fetch taxid=11008 organism=Saccharomyces cerevisiae virus L-A label=Saccharomyces cerevisiae virus L-A ==> spp='Saccharomyces cerevisiae virus L-A-2' acc='KC677754' taxid='1442158' [PATH A] accession-based fetch taxid=1442158 organism=Saccharomyces cerevisiae virus L-A-2 label=Saccharomyces cerevisiae virus L-A-2 ==> spp='Saccharomyces cerevisiae virus L-BC-2' acc='KX906605' taxid='1930605' [PATH A] accession-based fetch taxid=1930605 organism=Saccharomyces cerevisiae virus L-BC-2 label=Saccharomyces cerevisiae virus L-BC-2 ==> spp='Saccharomyces cerevisiae virus L-BC (La)' acc='NC_001641.1' taxid='42478' [PATH A] accession-based fetch taxid=42478 organism=Saccharomyces cerevisiae virus L-BC (La) label=Saccharomyces cerevisiae virus L-BC (La) ==> spp='Saccharomyces cerevisiae virus LBC' acc='OL469176' taxid='2993668' [PATH A] accession-based fetch taxid=2993668 organism=Saccharomyces cerevisiae virus LBC label=Saccharomyces cerevisiae virus LBC ==> spp='Saccharomyces cerevisiae virus LBCLa' acc='OK377020' taxid='2170233' [PATH A] accession-based fetch taxid=2170233 organism=Saccharomyces cerevisiae virus LBCLa label=Saccharomyces cerevisiae virus LBCLa ==> spp='Saccharomyces cerevisiae virus L-A-lus' acc='JN819511' taxid='1226531' [PATH A] accession-based fetch taxid=1226531 organism=Saccharomyces cerevisiae virus L-A-lus label=Saccharomyces cerevisiae virus L-A-lus ==> spp='Saccharomyces cerevisiae virus L-A-28' acc='KU845301' taxid='1825500' [PATH A] accession-based fetch taxid=1825500 organism=Saccharomyces cerevisiae virus L-A-28 label=Saccharomyces cerevisiae virus L-A-28 ==> spp='Saccharomyces cerevisiae virus L-BC-lus' acc='KT784813' taxid='1862312' [PATH A] accession-based fetch taxid=1862312 organism=Saccharomyces cerevisiae virus L-BC-lus label=Saccharomyces cerevisiae virus L-BC-lus ==> spp='Scheffersomyces segobiensis virus L' acc='NC_038697.1' taxid='1300323' [PATH A] accession-based fetch taxid=1300323 organism=Scheffersomyces segobiensis virus L label=Scheffersomyces segobiensis virus L ==> spp='Bell pepper alphaendornavirus' acc='NC_039216.1' taxid='354328' [PATH A] accession-based fetch taxid=354328 organism=Bell pepper alphaendornavirus label=Bell pepper alphaendornavirus ==> spp='Bell pepper mottle virus' acc='NC_009642.1' taxid='368735' [PATH A] accession-based fetch taxid=368735 organism=Bell pepper mottle virus label=Bell pepper mottle virus ==> spp='Pepper mild mottle virus' acc='NC_003630.1' taxid='12239' [PATH A] accession-based fetch taxid=12239 organism=Pepper mild mottle virus label=Pepper mild mottle virus ==> spp='Tropical soda apple mosaic virus' acc='NC_030229.1' taxid='327387' [PATH A] accession-based fetch taxid=327387 organism=Tropical soda apple mosaic virus label=Tropical soda apple mosaic virus ==> spp='Streptocarpus flower break virus' acc='NC_008365.1' taxid='335187' [PATH A] accession-based fetch taxid=335187 organism=Streptocarpus flower break virus label=Streptocarpus flower break virus ==> spp='Paprika mild mottle virus' acc='NC_004106.1' taxid='35281' [PATH A] accession-based fetch taxid=35281 organism=Paprika mild mottle virus label=Paprika mild mottle virus ==> spp='Opuntia virus 2' acc='NC_040685.2' taxid='2200716' [PATH A] accession-based fetch taxid=2200716 organism=Opuntia virus 2 label=Opuntia virus 2 ==> spp='Cucumber green mottle mosaic virus' acc='NC_001801.1' taxid='12235' [PATH A] accession-based fetch taxid=12235 organism=Cucumber green mottle mosaic virus label=Cucumber green mottle mosaic virus ==> spp='Cactus mild mottle virus' acc='NC_011803.1' taxid='229030' [PATH A] accession-based fetch taxid=229030 organism=Cactus mild mottle virus label=Cactus mild mottle virus ==> spp='Youcai mosaic virus' acc='NC_004422.1' taxid='228578' [PATH A] accession-based fetch taxid=228578 organism=Youcai mosaic virus label=Youcai mosaic virus ==> spp='Tomato mottle mosaic virus' acc='NC_022230.1' taxid='1391702' [PATH A] accession-based fetch taxid=1391702 organism=Tomato mottle mosaic virus label=Tomato mottle mosaic virus ==> spp='Tomato mosaic virus' acc='NC_002692.1' taxid='12253' [PATH A] accession-based fetch taxid=12253 organism=Tomato mosaic virus label=Tomato mosaic virus ==> spp='Tomato brown rugose fruit virus' acc='NC_028478.1' taxid='' [PATH A] accession-based fetch taxid=1761477 organism=Tomato brown rugose fruit virus label=Tomato brown rugose fruit virus ==> spp='Tobacco mosaic virus' acc='NC_001367.1' taxid='12242' [PATH A] accession-based fetch taxid=12242 organism=Tobacco mosaic virus label=Tobacco mosaic virus ==> spp='Tobacco mild green mosaic virus' acc='NC_001556.1' taxid='12241' [PATH A] accession-based fetch taxid=12241 organism=Tobacco mild green mosaic virus label=Tobacco mild green mosaic virus ==> spp='Rattail cactus necrosis-associated virus' acc='NC_016442.1' taxid='1123754' [PATH A] accession-based fetch taxid=1123754 organism=Rattail cactus necrosis-associated virus label=Rattail cactus necrosis-associated virus Done. Wrote: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/run_data/user_specified_proteomes/species_resolved.tsv [INFO] [09:41:31] Downloading species proteomes... == Step 2: protein download == Input: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/run_data/user_specified_proteomes/species_resolved.tsv Outdir: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/run_data/user_specified_proteomes ==> Aspergillus fumigatus plan=OK_ASSEMBLY_ACCESSION acc=GCF_000002655.1 taxid=746128 -> GCF_000002655.1 (specific assembly) proteins=9823 ==> Candida albicans plan=OK_ASSEMBLY_ACCESSION acc=GCF_000182965.3 taxid=5476 -> GCF_000182965.3 (specific assembly) proteins=6030 ==> Candida dubliniensis plan=OK_ASSEMBLY_ACCESSION acc=GCF_000026945.1 taxid=42374 -> GCF_000026945.1 (specific assembly) proteins=5859 ==> Candida parapsilosis plan=OK_ASSEMBLY_ACCESSION acc=GCF_000182765.1 taxid=5480 -> GCF_000182765.1 (specific assembly) proteins=5830 ==> Candida tropicalis plan=OK_ASSEMBLY_ACCESSION acc=GCF_000006335.3 taxid=5482 -> GCF_000006335.3 (specific assembly) proteins=6254 ==> Clavispora lusitaniae plan=OK_ASSEMBLY_ACCESSION acc=GCF_000003835.1 taxid=36911 -> GCF_000003835.1 (specific assembly) proteins=5935 ==> Cryptococcus neoformans plan=OK_ASSEMBLY_ACCESSION acc=GCF_000149245.1 taxid=5207 -> GCF_000149245.1 (specific assembly) proteins=7826 ==> Kluyveromyces lactis plan=OK_ASSEMBLY_ACCESSION acc=GCF_000002515.2 taxid=28985 -> GCF_000002515.2 (specific assembly) proteins=5085 ==> Lodderomyces elongisporus plan=OK_ASSEMBLY_ACCESSION acc=GCF_000149685.1 taxid=379508 -> GCF_000149685.1 (specific assembly) proteins=5799 ==> Meyerozyma guilliermondii plan=OK_ASSEMBLY_ACCESSION acc=GCF_000149425.1 taxid=4929 -> GCF_000149425.1 (specific assembly) proteins=5920 ==> Nakaseomyces glabratus plan=OK_ASSEMBLY_ACCESSION acc=GCA_002087555.1 taxid=5478 -> GCA_002087555.1 (specific assembly) proteins=5102 ==> Pichia kudriavzevii plan=OK_ASSEMBLY_ACCESSION acc=GCF_003054445.1 taxid=4909 -> GCF_003054445.1 (specific assembly) proteins=5139 ==> Rhodotorula mucilaginosa plan=OK_ASSEMBLY_ACCESSION acc=GCA_016584205.1 taxid=5537 -> GCA_016584205.1 (specific assembly) proteins=7059 ==> Saccharomyces cerevisiae plan=OK_ASSEMBLY_ACCESSION acc=GCF_000146045.2 taxid=4932 -> GCF_000146045.2 (specific assembly) proteins=6021 ==> Yarrowia lipolytica plan=OK_ASSEMBLY_ACCESSION acc=GCF_000002525.2 taxid=4952 -> GCF_000002525.2 (specific assembly) proteins=6472 ==> Malassezia globosa plan=OK_ASSEMBLY_ACCESSION acc=GCF_000181695.2 taxid=76773 -> GCF_000181695.2 (specific assembly) proteins=4278 ==> Malassezia restricta plan=OK_ASSEMBLY_ACCESSION acc=GCF_003290485.1 taxid=76775 -> GCF_003290485.1 (specific assembly) proteins=4406 ==> Malassezia sympodialis plan=OK_ASSEMBLY_ACCESSION acc=GCF_000349305.1 taxid=76777 -> GCF_000349305.1 (specific assembly) proteins=3318 ==> Entamoeba histolytica plan=OK_ASSEMBLY_ACCESSION acc=GCF_000208925.1 taxid=5759 -> GCF_000208925.1 (specific assembly) proteins=8151 ==> Entamoeba nuttalli plan=OK_ASSEMBLY_ACCESSION acc=GCF_000257125.1 taxid=412467 -> GCF_000257125.1 (specific assembly) proteins=6187 ==> Alphacoronavirus 1 plan=OK_DATASETS acc= taxid=693997 -> GCF_000856025.1 (refseq_any) proteins=9 ==> Alphapapillomavirus 10 plan=OK_DATASETS acc= taxid=333754 -> GCF_000861945.1 (refseq_any) proteins=9 ==> Alphapapillomavirus 14 plan=OK_DATASETS acc= taxid=931244 -> GCF_000862685.1 (refseq_any) proteins=7 ==> Alphapapillomavirus 2 plan=OK_DATASETS acc= taxid=337039 -> GCF_000864905.1 (refseq_any) proteins=7 ==> Alphapapillomavirus 4 plan=OK_DATASETS acc= taxid=337043 -> GCF_000864945.1 (refseq_any) proteins=7 ==> Alphapapillomavirus 9 plan=OK_DATASETS acc= taxid=337041 -> GCF_000863945.3 (refseq_any) proteins=9 ==> Alphapolyomavirus octihominis plan=OK_DATASETS acc= taxid=1891727 -> GCF_000887495.1 (refseq_any) proteins=5 ==> Alphapolyomavirus quintihominis plan=OK_DATASETS acc= taxid=1891726 -> GCF_000874865.1 (refseq_any) proteins=4 ==> Anellovirus cya/2019 plan=OK_ACCESSION_PROTEINS acc=MT501646 taxid=2749445 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MT501646 proteins=1 ==> Anellovirus cyb/2019 plan=OK_ACCESSION_PROTEINS acc=MT501649 taxid=2749446 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MT501649 proteins=1 ==> Anellovirus cyc/2019 plan=OK_ACCESSION_PROTEINS acc=MT501653 taxid=2749447 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MT501653 proteins=1 ==> Astrovirus MLB3 plan=OK_DATASETS acc= taxid=1247114 -> GCF_000899535.1 (refseq_any) proteins=3 ==> Avian coronavirus plan=OK_DATASETS acc= taxid=694014 -> GCF_000862965.1 (refseq_any) proteins=10 ==> Betacoronavirus plan=OK_DATASETS acc= taxid=694002 -> GCF_000858765.1 (refseq_any) proteins=9 ==> Betacoronavirus 1 plan=OK_DATASETS acc= taxid=694003 -> GCF_000862505.1 (refseq_any) proteins=12 ==> Betapapillomavirus 1 plan=OK_DATASETS acc= taxid=337051 -> GCF_000866505.1 (refseq_any) proteins=8 ==> Betapapillomavirus 2 plan=OK_DATASETS acc= taxid=333924 -> GCF_000863685.1 (refseq_any) proteins=7 ==> Betapapillomavirus 3 plan=OK_DATASETS acc= taxid=334207 -> GCF_000862825.1 (refseq_any) proteins=6 ==> Betapapillomavirus 4 plan=OK_DATASETS acc= taxid=334208 -> GCF_000846285.1 (refseq_any) proteins=7 ==> Betapolyomavirus hominis plan=OK_DATASETS acc= taxid=1891762 -> GCF_000837865.1 (refseq_any) proteins=6 ==> Betapolyomavirus quartihominis plan=OK_DATASETS acc= taxid=1891765 -> GCF_000870785.1 (refseq_any) proteins=5 ==> Betapolyomavirus secuhominis plan=OK_DATASETS acc= taxid=1891763 -> GCF_000863805.1 (refseq_any) proteins=6 ==> Betapolyomavirus tertihominis plan=OK_DATASETS acc= taxid=1891764 -> GCF_000873085.1 (refseq_any) proteins=5 ==> Bocaparvovirus primate1 plan=OK_DATASETS acc= taxid=3052040 -> GCF_000866725.1 (refseq_any) proteins=4 ==> Bocaparvovirus primate2 plan=OK_DATASETS acc= taxid=3052041 -> GCF_000882675.1 (refseq_any) proteins=4 ==> Brisavirus plan=OK_DATASETS acc= taxid=2732654 -> GCA_018584195.1 (genbank_fallback) proteins=2 ==> Cardiovirus A plan=OK_DATASETS acc= taxid=1821749 -> GCF_000862985.1 (refseq_any) proteins=2 ==> Cardiovirus B plan=OK_DATASETS acc= taxid=1821750 -> GCF_000861185.1 (refseq_any) proteins=3 ==> Cardiovirus D plan=OK_DATASETS acc= taxid=2734523 -> GCF_000875265.1 (refseq_any) proteins=1 ==> Chikungunya virus plan=OK_DATASETS acc= taxid=37124 -> GCF_000854045.1 (refseq_any) proteins=2 ==> Circoviridae sp. plan=OK_DATASETS acc= taxid=1954248 -> GCF_003656925.1 (refseq_any) proteins=2 ==> Coronavirus cya-BetaCoV/2019 plan=OK_DATASETS acc= taxid=2749448 -> GCA_031217065.1 (genbank_fallback) proteins=6 ==> Coronavirus cyb-BetaCoV/2019 plan=OK_DATASETS acc= taxid=2749449 -> GCA_031217075.1 (genbank_fallback) proteins=6 ==> Coronavirus cyc-BetaCoV/2019 plan=OK_DATASETS acc= taxid=2749450 -> GCA_031217125.1 (genbank_fallback) proteins=6 ==> Cowpox virus plan=OK_DATASETS acc= taxid=10243 -> GCF_000839185.1 (refseq_any) proteins=233 ==> Coxsackievirus A plan=OK_DATASETS acc= taxid=138948 -> GCF_000861905.1 (refseq_any) proteins=1 ==> Enterovirus 71 plan=OK_ACCESSION_PROTEINS acc=HQ400942 taxid=1006008 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=HQ400942 proteins=1 ==> Cyclovirus sp. plan=OK_DATASETS acc= taxid=1983780 -> GCA_031166015.1 (genbank_fallback) proteins=2 ==> Cytomegalovirus humanbeta5 plan=OK_DATASETS acc= taxid=3050295 -> GCF_000845245.1 (refseq_any) proteins=169 ==> Deltapolyomavirus decihominis plan=OK_DATASETS acc= taxid=1208309 -> GCF_000898335.1 (refseq_any) proteins=5 ==> Deltapolyomavirus undecihominis plan=OK_DATASETS acc= taxid=1891745 -> GCF_000904055.1 (refseq_any) proteins=6 ==> Dengue virus plan=OK_DATASETS acc= taxid=12637 -> GCF_000862125.1 (refseq_any) proteins=1 ==> Dependoparvovirus primate1 plan=OK_DATASETS acc= taxid=1511891 -> GCF_000836885.1 (refseq_any) proteins=2 ==> Ebola virus plan=OK_DATASETS acc= taxid=1570291 -> GCA_034098425.1 (genbank_fallback) proteins=9 ==> Enterovirus A plan=OK_DATASETS acc= taxid=138948 -> GCF_000861905.1 (refseq_any) proteins=1 ==> Enterovirus B plan=OK_DATASETS acc= taxid=138949 -> GCF_000861325.1 (refseq_any) proteins=1 ==> Enterovirus C plan=OK_DATASETS acc= taxid=138950 -> GCF_000861165.1 (refseq_any) proteins=1 ==> Enterovirus D plan=OK_DATASETS acc= taxid=138951 -> GCF_000861205.1 (refseq_any) proteins=1 ==> Enterovirus sp. plan=OK_DATASETS acc= taxid=47681 -> GCF_000919855.1 (refseq_any) proteins=1 ==> Enteroviruses plan=OK_DATASETS acc= taxid=12059 -> GCF_000861165.1 (refseq_any) proteins=1 ==> Epstein-Barr virus plan=OK_ACCESSION_PROTEINS acc=NC_007605 taxid=10376 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_007605 proteins=94 ==> Erythroparvovirus primate1 plan=OK_DATASETS acc= taxid=3052189 -> GCF_000839645.1 (refseq_any) proteins=6 ==> Gammapapillomavirus 1 plan=OK_DATASETS acc= taxid=333926 -> GCF_000864845.1 (refseq_any) proteins=7 ==> Gammapapillomavirus 11 plan=OK_DATASETS acc= taxid=1513256 -> GCF_000896435.1 (refseq_any) proteins=7 ==> Gammapapillomavirus 12 plan=OK_DATASETS acc= taxid=1513257 -> GCF_000888015.1 (refseq_any) proteins=7 ==> Gammapapillomavirus 22 plan=OK_DATASETS acc= taxid=1961679 -> GCF_002827005.1 (refseq_any) proteins=7 ==> Gammapapillomavirus 24 plan=OK_DATASETS acc= taxid=1961681 -> GCF_000918095.1 (refseq_any) proteins=7 ==> Gammapapillomavirus 3 plan=OK_DATASETS acc= taxid=333929 -> GCF_000841625.1 (refseq_any) proteins=7 ==> Gemycircularvirus CN-GZ1 plan=OK_ACCESSION_PROTEINS acc=MH427642 taxid=2583509 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MH427642 proteins=2 ==> Gemycircularvirus HV-GcV1 plan=OK_DATASETS acc= taxid=1862824 -> GCF_001679855.1 (refseq_any) proteins=4 ==> Gemycircularvirus sp. plan=OK_DATASETS acc= taxid=1983771 -> GCF_003848465.1 (refseq_any) proteins=3 ==> Haseki tick virus plan=OK_ACCESSION_PROTEINS acc=MW808978 taxid=2712269 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MW808978 proteins=1 ==> Hendra henipavirus plan=OK_DATASETS acc= taxid=3052223 -> GCF_000852685.1 (refseq_any) proteins=8 ==> Henipavirus nipahense plan=OK_DATASETS acc= taxid=3052225 -> GCF_000863625.1 (refseq_any) proteins=9 ==> Hepatitis A virus plan=OK_ACCESSION_PROTEINS acc=NC_001489 taxid=12092 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_001489 proteins=2 ==> Hepatitis B virus plan=OK_DATASETS acc= taxid=10407 -> GCF_000861825.2 (refseq_any) proteins=7 ==> Hepatitis C virus plan=OK_DATASETS acc= taxid=3052230 -> GCF_000861845.1 (refseq_any) proteins=2 ==> Herpes simplex virus 1 plan=OK_DATASETS acc= taxid=10298 -> GCF_000859985.2 (refseq_any) proteins=77 ==> Herpes simplex virus 2 plan=OK_DATASETS acc= taxid=10310 -> GCF_000858385.2 (refseq_any) proteins=77 ==> Human adenovirus sp. plan=OK_DATASETS acc= taxid=1907210 -> GCA_006434875.1 (genbank_fallback) proteins=38 ==> Human alphaherpesvirus 1 plan=OK_DATASETS acc= taxid=10298 -> GCF_000859985.2 (refseq_any) proteins=77 ==> Human alphaherpesvirus 2 plan=OK_DATASETS acc= taxid=10310 -> GCF_000858385.2 (refseq_any) proteins=77 ==> Human alphaherpesvirus 3 plan=OK_DATASETS acc= taxid=10335 -> GCF_000858285.1 (refseq_any) proteins=73 ==> Human associated cyclovirus 10 plan=OK_DATASETS acc= taxid=2038728 -> GCF_000918035.2 (refseq_any) proteins=2 ==> Human betaherpesvirus 5 plan=OK_DATASETS acc= taxid=10359 -> GCF_000845245.1 (refseq_any) proteins=169 ==> Human betaherpesvirus 6 plan=OK_ACCESSION_PROTEINS acc=KY315532 taxid=10368 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=KY315532 proteins=129 ==> Human betaherpesvirus 6A plan=OK_DATASETS acc= taxid=32603 -> GCF_000845685.2 (refseq_any) proteins=88 ==> Human betaherpesvirus 6B plan=OK_DATASETS acc= taxid=32604 -> GCF_000846365.1 (refseq_any) proteins=104 ==> Human betaherpesvirus 7 plan=OK_DATASETS acc= taxid=10372 -> GCF_000848125.1 (refseq_any) proteins=86 ==> Human bocavirus plan=OK_ACCESSION_PROTEINS acc=NC_007455 taxid=3052040 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_007455 proteins=4 ==> Human coronavirus plan=OK_ACCESSION_PROTEINS acc=NC_002645 taxid=11137 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_002645 proteins=8 ==> Human coronavirus 229E plan=OK_DATASETS acc= taxid=11137 -> GCF_000853505.1 (refseq_any) proteins=8 ==> Human coronavirus HKU1 plan=OK_DATASETS acc= taxid=290028 -> GCF_000858765.1 (refseq_any) proteins=9 ==> Human coronavirus KUMC22-3 plan=OK_ACCESSION_PROTEINS acc=PP868300 taxid=3161185 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=PP868300 proteins=9 ==> Human coronavirus NL63 plan=OK_DATASETS acc= taxid=277944 -> GCF_000853865.1 (refseq_any) proteins=7 ==> Human cytomegalovirus plan=OK_ACCESSION_PROTEINS acc=NC_001347 taxid=10359 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_001347 proteins=153 ==> Human enterovirus plan=OK_ACCESSION_PROTEINS acc=MH933845 taxid=1193974 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MH933845 proteins=1 ==> human gammaherpesvirus 4 plan=OK_DATASETS acc= taxid=10376 -> GCF_000872045.1 (refseq_any) proteins=80 ==> Human gammaherpesvirus 8 plan=OK_DATASETS acc= taxid=37296 -> GCF_000838265.1 (refseq_any) proteins=86 ==> Human herpesvirus 1 plan=OK_ACCESSION_PROTEINS acc=NC_001806 taxid=10298 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_001806 proteins=77 ==> Human herpesvirus 6 plan=OK_ACCESSION_PROTEINS acc=NC_001664 taxid=32603 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_001664 proteins=88 ==> Human herpesvirus 7 plan=OK_ACCESSION_PROTEINS acc=NC_001716 taxid=10372 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_001716 proteins=86 ==> Human herpesvirus 8 plan=OK_ACCESSION_PROTEINS acc=NC_009333 taxid=37296 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_009333 proteins=86 ==> Human immunodeficiency virus plan=OK_DATASETS acc= taxid=12721 -> GCA_003102595.1 (genbank_fallback) proteins=9 ==> Human immunodeficiency virus 1 plan=OK_DATASETS acc= taxid=11676 -> GCF_000864765.1 (refseq_any) proteins=10 ==> Human mastadenovirus A plan=OK_DATASETS acc= taxid=129875 -> GCF_000846805.1 (refseq_any) proteins=36 ==> Human mastadenovirus B plan=OK_DATASETS acc= taxid=108098 -> GCF_000857085.1 (refseq_any) proteins=38 ==> Human mastadenovirus C plan=OK_DATASETS acc= taxid=129951 -> GCF_000845085.1 (refseq_any) proteins=38 ==> Human mastadenovirus D plan=OK_DATASETS acc= taxid=130310 -> GCF_000845985.1 (refseq_any) proteins=38 ==> Human mastadenovirus E plan=OK_DATASETS acc= taxid=130308 -> GCF_000859665.1 (refseq_any) proteins=37 ==> Human mastadenovirus F plan=OK_DATASETS acc= taxid=130309 -> GCF_000846685.1 (refseq_any) proteins=34 ==> Human metapneumovirus plan=OK_ACCESSION_PROTEINS acc=NC_004148 taxid=162145 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_004148 proteins=9 ==> Human orthopneumovirus plan=OK_DATASETS acc= taxid=11250 -> GCF_000855545.1 (refseq_any) proteins=11 ==> Human orthorubulavirus 2 plan=OK_DATASETS acc= taxid=2560525 -> GCF_000863525.1 (refseq_any) proteins=7 ==> Human orthorubulavirus 4 plan=OK_DATASETS acc= taxid=2560526 -> GCF_000910675.1 (refseq_any) proteins=7 ==> Human papillomavirus plan=OK_ACCESSION_PROTEINS acc=NC_001526 taxid=333760 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_001526 proteins=9 ==> Human parechovirus 1B plan=OK_ACCESSION_PROTEINS acc=OR728261 taxid=3092269 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=OR728261 proteins=1 ==> Human parvovirus B19 plan=OK_ACCESSION_PROTEINS acc=NC_000883 taxid=10798 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_000883 proteins=6 ==> Human picobirnavirus plan=OK_DATASETS acc= taxid=145856 -> GCF_000859285.1 (refseq_any) proteins=3 ==> Human polyomavirus 6 plan=OK_DATASETS acc= taxid=746830 -> GCF_000888495.1 (refseq_any) proteins=5 ==> Human polyomavirus 9 plan=OK_DATASETS acc= taxid=943908 -> GCF_000891615.1 (refseq_any) proteins=5 ==> Human PoSCV5-like circular virus plan=OK_DATASETS acc= taxid=1965018 -> GCF_013087445.1 (refseq_any) proteins=2 ==> Human respiratory circovirus-like 1 plan=OK_ACCESSION_PROTEINS acc=MK674279 taxid=2714898 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MK674279 proteins=2 ==> Human respiratory circovirus-like 2 plan=OK_ACCESSION_PROTEINS acc=MK674280 taxid=2714899 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MK674280 proteins=2 ==> Human respiratory circular DNA virus plan=OK_ACCESSION_PROTEINS acc=MN535745 taxid=2057509 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MN535745 proteins=3 ==> human respiratory syncytial virus plan=OK_DATASETS acc= taxid=11250 -> GCF_000855545.1 (refseq_any) proteins=11 ==> Human respirovirus 1 plan=OK_DATASETS acc= taxid=12730 -> GCF_000848705.1 (refseq_any) proteins=10 ==> Human respirovirus 3 plan=OK_DATASETS acc= taxid=11216 -> GCF_000850205.1 (refseq_any) proteins=8 ==> Human rhinovirus A, B, C (HRV) ECDC plan=OK_ACCESSION_PROTEINS acc=NC_001617 taxid=147711 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_001617 proteins=1 ==> Human rhinovirus sp. plan=OK_ACCESSION_PROTEINS acc=X01087 taxid=169066 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=X01087 proteins=1 ==> Influenza A virus plan=OK_DATASETS acc= taxid=11320 -> GCF_000851145.1 (refseq_any) proteins=10 ==> Influenza B virus plan=OK_DATASETS acc= taxid=11520 -> GCF_000820495.2 (refseq_any) proteins=10 ==> Influenza C virus plan=OK_ASSEMBLY_ACCESSION acc=GCF_000856665 taxid=11552 -> GCF_000856665 (specific assembly) proteins=9 ==> JC polyomavirus plan=OK_ACCESSION_PROTEINS acc=NC_001699 taxid=10632 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_001699 proteins=6 ==> KI Polyomavirus plan=OK_ACCESSION_PROTEINS acc=NC_009238 taxid=1891764 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_009238 proteins=5 ==> Lymphocryptovirus humangamma4 plan=OK_DATASETS acc= taxid=3050299 -> GCF_000872045.1 (refseq_any) proteins=80 ==> Lyssavirus rabies plan=OK_DATASETS acc= taxid=11292 -> GCF_000859625.1 (refseq_any) proteins=5 ==> Mammarenavirus choriomeningitidis plan=OK_DATASETS acc= taxid=3052303 -> GCF_000851025.1 (refseq_any) proteins=4 ==> Mammarenavirus lassaense plan=OK_DATASETS acc= taxid=3052310 -> GCF_000851705.1 (refseq_any) proteins=4 ==> Mastadenovirus sp. plan=OK_DATASETS acc= taxid=2050578 -> GCA_025985445.1 (genbank_fallback) proteins=18 ==> Measles morbillivirus plan=OK_DATASETS acc= taxid=11234 -> GCF_000854845.1 (refseq_any) proteins=8 ==> Merkel cell polyomavirus plan=OK_ACCESSION_PROTEINS acc=NC_010277 taxid=493803 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_010277 proteins=4 ==> MERS coronavirus plan=OK_ACCESSION_PROTEINS acc=NC_019843 taxid=1335626 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_019843 proteins=11 ==> Metapneumovirus hominis plan=OK_DATASETS acc= taxid=3048148 -> GCF_002815375.1 (refseq_any) proteins=9 ==> Middle East respiratory syndrome-related coronavirus plan=OK_DATASETS acc= taxid=1335626 -> GCF_000901155.1 (refseq_any) proteins=11 ==> Monkeypox virus plan=OK_DATASETS acc= taxid=10244 -> GCF_000857045.1 (refseq_any) proteins=180 ==> Morbillivirus hominis plan=OK_DATASETS acc= taxid=3052345 -> GCF_000854845.1 (refseq_any) proteins=8 ==> Mumps orthorubulavirus plan=OK_DATASETS acc= taxid=2560602 -> GCF_000856685.1 (refseq_any) proteins=8 ==> Nipah virus plan=OK_ACCESSION_PROTEINS acc=NC_002728 taxid=3052225 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_002728 proteins=9 ==> Norovirus plan=OK_DATASETS acc= taxid=142786 -> GCF_000864005.1 (refseq_any) proteins=3 ==> Norwalk virus plan=OK_DATASETS acc= taxid=11983 -> GCF_000864005.1 (refseq_any) proteins=3 ==> Orthoflavivirus nilense plan=OK_DATASETS acc= taxid=3048448 -> GCF_000861085.1 (refseq_any) proteins=2 ==> Orthohantavirus puumalaense plan=OK_DATASETS acc= taxid=3052493 -> GCF_000854405.1 (refseq_any) proteins=3 ==> Orthomarburgvirus marburgense plan=OK_DATASETS acc= taxid=3052505 -> GCF_000857325.3 (refseq_any) proteins=7 ==> Orthopicobirnavirus hominis plan=OK_DATASETS acc= taxid=2956252 -> GCF_000859285.1 (refseq_any) proteins=3 ==> Orthopneumovirus hominis plan=OK_DATASETS acc= taxid=3049954 -> GCF_000855545.1 (refseq_any) proteins=11 ==> Parechovirus A plan=OK_DATASETS acc= taxid=1803956 -> GCF_000861505.1 (refseq_any) proteins=1 ==> Pegivirus hominis plan=OK_DATASETS acc= taxid=3052608 -> GCF_000862005.1 (refseq_any) proteins=1 ==> Poliovirus plan=OK_ACCESSION_PROTEINS acc=NC_002058 taxid=138950 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_002058 proteins=1 ==> Polyomavirus plan=OK_DATASETS acc= taxid=36362 -> GCF_002374915.1 (refseq_any) proteins=4 ==> Primate T-lymphotropic virus 1 plan=OK_DATASETS acc= taxid=194440 -> GCF_000861125.1 (refseq_any) proteins=4 ==> Protoparvovirus sp. plan=OK_ACCESSION_PROTEINS acc=PQ310103 taxid=1987106 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=PQ310103 proteins=3 ==> human respiratory syncytial virus plan=OK_ACCESSION_PROTEINS acc=NC_001781 taxid=11250 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_001781 proteins=11 ==> Respirovirus laryngotracheitidis plan=OK_DATASETS acc= taxid=3049952 -> GCF_000848705.1 (refseq_any) proteins=10 ==> Respirovirus pneumoniae plan=OK_DATASETS acc= taxid=3049953 -> GCF_000850205.1 (refseq_any) proteins=8 ==> Rhinovirus A plan=OK_DATASETS acc= taxid=147711 -> GCF_000862245.1 (refseq_any) proteins=1 ==> Rhinovirus B plan=OK_DATASETS acc= taxid=147712 -> GCF_000861265.1 (refseq_any) proteins=1 ==> Rhinovirus C plan=OK_DATASETS acc= taxid=463676 -> GCF_000872325.1 (refseq_any) proteins=1 ==> Roseolovirus humanbeta7 plan=OK_DATASETS acc= taxid=3050298 -> GCF_000848125.1 (refseq_any) proteins=86 ==> Rotavirus A plan=OK_DATASETS acc= taxid=28875 -> GCF_000880735.1 (refseq_any) proteins=12 ==> Rubella virus plan=OK_ACCESSION_PROTEINS acc=NC_001545 taxid=11041 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_001545 proteins=2 ==> Salivirus A plan=OK_DATASETS acc= taxid=1330524 -> GCF_000885035.1 (refseq_any) proteins=1 ==> Severe acute respiratory syndrome coronavirus plan=OK_DATASETS acc= taxid=2901879 -> GCF_000864885.1 (refseq_any) proteins=15 ==> Simian foamy virus plan=OK_DATASETS acc= taxid=11642 -> GCA_031102285.1 (genbank_fallback) proteins=4 ==> Simplexvirus humanalpha1 plan=OK_DATASETS acc= taxid=3050292 -> GCF_000859985.2 (refseq_any) proteins=77 ==> Small anellovirus plan=OK_DATASETS acc= taxid=393049 -> GCF_000859305.1 (refseq_any) proteins=3 ==> Variola virus plan=OK_ACCESSION_PROTEINS acc=NC_001611 taxid=10255 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_001611 proteins=197 ==> St. Louis encephalitis virus plan=OK_DATASETS acc= taxid=11080 -> GCF_000866785.1 (refseq_any) proteins=1 ==> Statovirus sp. plan=OK_ACCESSION_PROTEINS acc=OR367719 taxid=2747383 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=OR367719 proteins=2 ==> Tetraparvovirus primate1 plan=OK_DATASETS acc= taxid=3052770 -> GCF_000861005.1 (refseq_any) proteins=2 ==> Torque teno midi virus plan=OK_ACCESSION_PROTEINS acc=MN165095 taxid=432261 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MN165095 proteins=1 ==> Torque teno mini virus plan=OK_DATASETS acc= taxid=93678 -> GCF_000905335.1 (refseq_any) proteins=3 ==> Torque teno mini virus ALA22 plan=OK_DATASETS acc= taxid=1535290 -> GCF_000930495.1 (refseq_any) proteins=3 ==> Torque teno mini virus ALH8 plan=OK_DATASETS acc= taxid=1535291 -> GCF_000929855.1 (refseq_any) proteins=2 ==> Torque teno virus plan=OK_DATASETS acc= taxid=68887 -> GCF_018580245.1 (refseq_any) proteins=4 ==> Torque teno virus 13 plan=OK_DATASETS acc= taxid=687352 -> GCF_002818305.1 (refseq_any) proteins=2 ==> Torque teno virus 16 plan=OK_DATASETS acc= taxid=687355 -> GCF_000889855.1 (refseq_any) proteins=2 ==> Torque teno virus 24 plan=OK_DATASETS acc= taxid=687363 -> GCF_002818405.1 (refseq_any) proteins=4 ==> Torque teno virus 5 plan=OK_DATASETS acc= taxid=687344 -> GCF_002818195.1 (refseq_any) proteins=2 ==> TTV-like mini virus plan=OK_DATASETS acc= taxid=93678 -> GCF_000905335.1 (refseq_any) proteins=3 ==> Vaccinia virus plan=OK_DATASETS acc= taxid=10245 -> GCF_000860085.1 (refseq_any) proteins=223 ==> Varicella-zoster virus plan=OK_ACCESSION_PROTEINS acc=NC_001348 taxid=10335 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_001348 proteins=73 ==> Varicellovirus humanalpha3 plan=OK_DATASETS acc= taxid=3050294 -> GCF_000858285.1 (refseq_any) proteins=73 ==> Vesiculovirus chandipura plan=OK_DATASETS acc= taxid=1972576 -> GCF_000906815.1 (refseq_any) proteins=5 ==> Vientovirus plan=OK_DATASETS acc= taxid=2732655 -> GCF_013088445.1 (refseq_any) proteins=3 ==> Cytomegalovirus plan=OK_DATASETS acc= taxid=10358 -> GCF_000843725.1 (refseq_any) proteins=169 ==> Zaire ebolavirus plan=OK_DATASETS acc= taxid=186538 -> GCF_000848505.1 (refseq_any) proteins=9 ==> Zika virus plan=OK_DATASETS acc= taxid=64320 -> GCF_000882815.3 (refseq_any) proteins=1 ==> Entamoeba-associated CRESS DNA virus 1 plan=OK_ACCESSION_PROTEINS acc=MT293410.1 taxid=2766561 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MT293410.1 proteins=2 ==> Entamoeba-associated CRESS DNA virus 1 plan=OK_ACCESSION_PROTEINS acc=MT293411.1 taxid=2766561 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MT293411.1 proteins=2 ==> Entamoeba-associated CRESS DNA virus 1 plan=OK_ACCESSION_PROTEINS acc=MT293412.1 taxid=2766561 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MT293412.1 proteins=2 ==> Nimphelosvirus isildur plan=OK_ACCESSION_PROTEINS acc=MT293413.1 taxid=2956228 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MT293413.1 proteins=2 ==> Entamoeba-associated CRESS DNA virus 2 plan=OK_ACCESSION_PROTEINS acc=MT293414.1 taxid=2766562 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MT293414.1 proteins=2 ==> Entamoeba-associated CRESS DNA virus 2 plan=OK_ACCESSION_PROTEINS acc=MT293415.1 taxid=2766562 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MT293415.1 proteins=2 ==> Entamoeba-associated CRESS DNA virus 3 plan=OK_ACCESSION_PROTEINS acc=MT293416.1 taxid=2766563 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MT293416.1 proteins=2 ==> Entamoeba-associated CRESS DNA virus 3 plan=OK_ACCESSION_PROTEINS acc=MT293417.1 taxid=2766563 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MT293417.1 proteins=2 ==> Entamoeba-associated CRESS DNA virus 4 plan=OK_ACCESSION_PROTEINS acc=MT293418.1 taxid=2766564 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MT293418.1 proteins=2 ==> Entamoeba-associated CRESS DNA virus 4 plan=OK_ACCESSION_PROTEINS acc=MT293419.1 taxid=2766564 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MT293419.1 proteins=2 ==> Entamoeba-associated CRESS DNA virus 4 plan=OK_ACCESSION_PROTEINS acc=MT293420.1 taxid=2766564 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MT293420.1 proteins=2 ==> Human lung-associated brisavirus AA plan=OK_ACCESSION_PROTEINS acc=MK059754.1 taxid=2571075 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MK059754.1 proteins=3 ==> Human respiratory-associated brisavirus plan=OK_ACCESSION_PROTEINS acc=MK059755.1 taxid=3116878 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MK059755.1 proteins=3 ==> Human lung-associated brisavirus MD plan=OK_ACCESSION_PROTEINS acc=MK059756.1 taxid=2571077 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MK059756.1 proteins=3 ==> Human lung-associated brisavirus RC plan=OK_ACCESSION_PROTEINS acc=MK059757.1 taxid=2571078 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MK059757.1 proteins=3 ==> Human oral-associated brisavirus YH plan=OK_ACCESSION_PROTEINS acc=MK059758.1 taxid=2571086 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MK059758.1 proteins=3 ==> Human gut-associated brisavirus VW plan=OK_ACCESSION_PROTEINS acc=MK059759.1 taxid=2571073 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MK059759.1 proteins=3 ==> Human lung-associated vientovirus AL plan=OK_ACCESSION_PROTEINS acc=MK059760.1 taxid=2571079 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MK059760.1 proteins=3 ==> Human lung-associated vientovirus DC plan=OK_ACCESSION_PROTEINS acc=MK059761.1 taxid=2571080 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MK059761.1 proteins=3 ==> Human lung-associated vientovirus ES plan=OK_ACCESSION_PROTEINS acc=MK059762.1 taxid=2571081 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MK059762.1 proteins=3 ==> Human lung-associated vientovirus FB plan=OK_ACCESSION_PROTEINS acc=MK059763.1 taxid=2571082 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MK059763.1 proteins=3 ==> Human lung-associated vientovirus JB plan=OK_ACCESSION_PROTEINS acc=MK059764.1 taxid=2571083 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MK059764.1 proteins=3 ==> Human lung-associated vientovirus JY plan=OK_ACCESSION_PROTEINS acc=MK059765.1 taxid=2571084 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MK059765.1 proteins=3 ==> Human lung-associated vientovirus LT plan=OK_ACCESSION_PROTEINS acc=MK059766.1 taxid=2571085 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MK059766.1 proteins=3 ==> Human oral-associated vientovirus AV plan=OK_ACCESSION_PROTEINS acc=MK059767.1 taxid=2571087 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MK059767.1 proteins=3 ==> Human oral-associated vientovirus EC plan=OK_ACCESSION_PROTEINS acc=MK059768.1 taxid=2571088 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MK059768.1 proteins=3 ==> Human oral-associated vientovirus LZ plan=OK_ACCESSION_PROTEINS acc=MK059769.1 taxid=2571089 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MK059769.1 proteins=3 ==> Human oral-associated vientovirus MC plan=OK_ACCESSION_PROTEINS acc=MK059770.1 taxid=2571090 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MK059770.1 proteins=3 ==> Human oral-associated vientovirus XM plan=OK_ACCESSION_PROTEINS acc=MK059771.1 taxid=2571091 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MK059771.1 proteins=3 ==> Human gut-associated vientovirus MW plan=OK_ACCESSION_PROTEINS acc=MK059772.1 taxid=2571074 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MK059772.1 proteins=3 ==> Trichomonas vaginalis virus plan=OK_ACCESSION_PROTEINS acc=NC_003824.1 taxid=29256 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_003824.1 proteins=2 ==> Malassezia sympodialis mycovirus plan=OK_ACCESSION_PROTEINS acc=MN812428 taxid=2766745 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MN812428 proteins=3 ==> Malassezia sympodialis mycovirus plan=OK_ACCESSION_PROTEINS acc=MN831678 taxid=2766745 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MN831678 proteins=1 ==> Totivirus nijyuroku plan=OK_ACCESSION_PROTEINS acc=MN603497 taxid=3432961 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MN603497 proteins=3 ==> Malassezia restricta virus MrV40S plan=OK_ACCESSION_PROTEINS acc=MN603498 taxid=2727864 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=MN603498 proteins=1 ==> Pichia manshurica totivirus 1 plan=OK_ACCESSION_PROTEINS acc=PV394617.1 taxid=3414160 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=PV394617.1 proteins=1 ==> Pichia manshurica totivirus 1 plan=OK_ACCESSION_PROTEINS acc=PV394616.1 taxid=3414160 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=PV394616.1 proteins=2 ==> Pichia membranifaciens plan=OK_ACCESSION_PROTEINS acc=OL687555.1 taxid=2930201 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=OL687555.1 proteins=2 ==> Pichia stipitis strain CBS 6054 endogenous virus plan=OK_ACCESSION_PROTEINS acc=GQ291320.1 taxid=4924 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=GQ291320.1 proteins=1 ==> Pichia stipitis strain CBS 6054 endogenous virus plan=OK_ACCESSION_PROTEINS acc=GQ291321.1 taxid=4924 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=GQ291321.1 proteins=1 ==> Saccharomyces cerevisiae virus L-A plan=OK_ACCESSION_PROTEINS acc=NC_003745.1 taxid=11008 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_003745.1 proteins=3 ==> Saccharomyces cerevisiae virus L-A-2 plan=OK_ACCESSION_PROTEINS acc=KC677754 taxid=1442158 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=KC677754 proteins=2 ==> Saccharomyces cerevisiae virus L-BC-2 plan=OK_ACCESSION_PROTEINS acc=KX906605 taxid=1930605 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=KX906605 proteins=2 ==> Saccharomyces cerevisiae virus L-BC (La) plan=OK_ACCESSION_PROTEINS acc=NC_001641.1 taxid=42478 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_001641.1 proteins=2 ==> Saccharomyces cerevisiae virus LBC plan=OK_ACCESSION_PROTEINS acc=OL469176 taxid=2993668 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=OL469176 proteins=1 ==> Saccharomyces cerevisiae virus LBCLa plan=OK_ACCESSION_PROTEINS acc=OK377020 taxid=2170233 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=OK377020 proteins=2 ==> Saccharomyces cerevisiae virus L-A-lus plan=OK_ACCESSION_PROTEINS acc=JN819511 taxid=1226531 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=JN819511 proteins=2 ==> Saccharomyces cerevisiae virus L-A-28 plan=OK_ACCESSION_PROTEINS acc=KU845301 taxid=1825500 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=KU845301 proteins=2 ==> Saccharomyces cerevisiae virus L-BC-lus plan=OK_ACCESSION_PROTEINS acc=KT784813 taxid=1862312 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=KT784813 proteins=2 ==> Scheffersomyces segobiensis virus L plan=OK_ACCESSION_PROTEINS acc=NC_038697.1 taxid=1300323 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_038697.1 proteins=3 ==> Bell pepper alphaendornavirus plan=OK_ACCESSION_PROTEINS acc=NC_039216.1 taxid=354328 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_039216.1 proteins=1 ==> Bell pepper mottle virus plan=OK_ACCESSION_PROTEINS acc=NC_009642.1 taxid=368735 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_009642.1 proteins=5 ==> Pepper mild mottle virus plan=OK_ACCESSION_PROTEINS acc=NC_003630.1 taxid=12239 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_003630.1 proteins=4 ==> Tropical soda apple mosaic virus plan=OK_ACCESSION_PROTEINS acc=NC_030229.1 taxid=327387 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_030229.1 proteins=4 ==> Streptocarpus flower break virus plan=OK_ACCESSION_PROTEINS acc=NC_008365.1 taxid=335187 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_008365.1 proteins=4 ==> Paprika mild mottle virus plan=OK_ACCESSION_PROTEINS acc=NC_004106.1 taxid=35281 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_004106.1 proteins=4 ==> Opuntia virus 2 plan=OK_ACCESSION_PROTEINS acc=NC_040685.2 taxid=2200716 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_040685.2 proteins=4 ==> Cucumber green mottle mosaic virus plan=OK_ACCESSION_PROTEINS acc=NC_001801.1 taxid=12235 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_001801.1 proteins=4 ==> Cactus mild mottle virus plan=OK_ACCESSION_PROTEINS acc=NC_011803.1 taxid=229030 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_011803.1 proteins=4 ==> Youcai mosaic virus plan=OK_ACCESSION_PROTEINS acc=NC_004422.1 taxid=228578 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_004422.1 proteins=3 ==> Tomato mottle mosaic virus plan=OK_ACCESSION_PROTEINS acc=NC_022230.1 taxid=1391702 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_022230.1 proteins=4 ==> Tomato mosaic virus plan=OK_ACCESSION_PROTEINS acc=NC_002692.1 taxid=12253 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_002692.1 proteins=4 ==> Tomato brown rugose fruit virus plan=OK_ACCESSION_PROTEINS acc=NC_028478.1 taxid=1761477 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_028478.1 proteins=4 ==> Tobacco mosaic virus plan=OK_ACCESSION_PROTEINS acc=NC_001367.1 taxid=12242 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_001367.1 proteins=6 ==> Tobacco mild green mosaic virus plan=OK_ACCESSION_PROTEINS acc=NC_001556.1 taxid=12241 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_001556.1 proteins=4 ==> Rattail cactus necrosis-associated virus plan=OK_ACCESSION_PROTEINS acc=NC_016442.1 taxid=1123754 acc_type=nuccore db=nuccore rettype=fasta_cds_aa -> acc=NC_016442.1 proteins=4 DONE. Manifest: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/run_data/user_specified_proteomes/proteomes_manifest.tsv [INFO] [09:48:48] No UniProt proteome rows in plan; nothing to do. ---- [09:48:48] Modules II–III: finalize user-supplied and accession-fetched proteins ---- ---- [09:48:48] Module IV-C: supported collection — cRAP contaminants ---- [INFO] [09:48:48] Downloading crap_ccp.fasta from Zenodo... % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 54094 0 0 0 0 0 0 --:--:-- 0:00:01 --:--:-- 0 100 54094 100 54094 0 0 37250 0 0:00:01 0:00:01 --:--:-- 38860 [INFO] [09:48:49] cRAP set='ccp': 125 sequences [INFO] [09:48:49] cRAP combined FASTA for this run: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/run_data/crap_combined_ccp.fasta ============================================================ [09:48:49] PHASE 2: Build harmonized maniFasta database ============================================================ [INFO] [09:48:49] Lineage override from registry: source='VIRUSES_HERVS' -> lineage_taxid='206037' [INFO] [09:48:49] Source registry meta loaded for 20 labels (3 collection labels). [INFO] [09:48:49] HOMD taxonomy table loaded: 527 HMT entries (from /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/run_data/homd/homd_taxonomy_filtered.tsv). [INFO] [09:49:27] HOMD proteins written: 729243 (filtered out: 0) [INFO] [09:49:30] HUMAN_CI proteins written: 42547; skipped: 0 [INFO] [09:49:30] cRAP record 'cRAP126': applied taxon override (Staphylococcus aureus, taxid=1280) [INFO] [09:49:30] cRAP record 'cRAP127': applied taxon override (Pseudomonas aeruginosa, taxid=287) [INFO] [09:49:30] CRAP proteins written: 125; skipped: 0 [INFO] [09:49:30] Manifest schema detected: new [INFO] [09:49:30] Manifest loaded: 274 OK usable rows (skipped_non_ok=0, skipped_missing_file=0) [INFO] [09:49:36] Manifest-derived proteins written: 124974 [INFO] [09:49:36] User metadata loaded: 20477 entries from /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/run_data/user_supplied/user_supplied_metadata.tsv [WARN] [09:49:36] Starting NCBI taxonomy enrichment for 20477 user metadata rows (sleep=2.0s between requests, API key set). [WARN] [09:49:36] [Obelisk_000003_000001_000001_1] No taxid or organism supplied; all taxonomy fields remain at defaults. Consider adding values to the metadata table. [WARN] [09:49:36] [Obelisk_000004_000001_000001_1] No taxid or organism supplied; all taxonomy fields remain at defaults. Consider adding values to the metadata table. [WARN] [09:49:36] [Obelisk_000004_000001_000001_2] No taxid or organism supplied; all taxonomy fields remain at defaults. Consider adding values to the metadata table. [WARN] [09:49:36] [Obelisk_000006_000001_000002_1] No taxid or organism supplied; all taxonomy fields remain at defaults. Consider adding values to the metadata table. [WARN] [09:49:36] [Obelisk_000006_000002_000001_1] No taxid or organism supplied; all taxonomy fields remain at defaults. Consider adding values to the metadata table. [WARN] [09:49:36] [Obelisk_000006_000003_000001_1] No taxid or organism supplied; all taxonomy fields remain at defaults. Consider adding values to the metadata table. [WARN] [09:49:36] [Obelisk_000006_000003_000002_1] No taxid or organism supplied; all taxonomy fields remain at defaults. Consider adding values to the metadata table. [WARN] [09:49:36] [Obelisk_000006_000004_000001_1] No taxid or organism supplied; all taxonomy fields remain at defaults. Consider adding values to the metadata table. [WARN] [09:49:36] [Obelisk_000009_000001_000001_1] No taxid or organism supplied; all taxonomy fields remain at defaults. Consider adding values to the metadata table. [WARN] [09:49:36] [Obelisk_000010_000001_000001_1] No taxid or organism supplied; all taxonomy fields remain at defaults. Consider adding values to the metadata table. [WARN] [09:49:36] [Obelisk_000010_000001_000002_1] No taxid or organism supplied; all taxonomy fields remain at defaults. Consider adding values to the metadata table. [WARN] [09:49:36] [Obelisk_000010_000001_000003_1] No taxid or organism supplied; all taxonomy fields remain at defaults. Consider adding values to the metadata table. [WARN] [09:49:36] [Obelisk_000010_000001_000004_1] No taxid or organism supplied; all taxonomy fields remain at defaults. Consider adding values to the metadata table. [WARN] [09:49:36] [Obelisk_000011_000001_000003_1] No taxid or organism supplied; all taxonomy fields remain at defaults. Consider adding values to the metadata table. [WARN] [09:49:36] [Obelisk_000011_000001_000003_2] No taxid or organism supplied; all taxonomy fields remain at defaults. Consider adding values to the metadata table. [WARN] [09:49:36] [Obelisk_000012_000001_000001_1] No taxid or organism supplied; all taxonomy fields remain at defaults. Consider adding values to the metadata table. [WARN] [09:49:36] [Obelisk_000012_000001_000001_2] No taxid or organism supplied; all taxonomy fields remain at defaults. Consider adding values to the metadata table. [WARN] [09:49:36] [Obelisk_000013_000001_000001_1] No taxid or organism supplied; all taxonomy fields remain at defaults. Consider adding values to the metadata table. [WARN] [09:49:36] [Obelisk_000013_000001_000001_2] No taxid or organism supplied; all taxonomy fields remain at defaults. Consider adding values to the metadata table. [WARN] [09:49:36] [Obelisk_000014_000001_000001_1] No taxid or organism supplied; all taxonomy fields remain at defaults. Consider adding values to the metadata table. [WARN] [09:49:36] [Obelisk_000014_000001_000002_1] No taxid or organism supplied; all taxonomy fields remain at defaults. Consider adding values to the metadata table. [WARN] [09:49:36] [Obelisk_000015_000001_000001_1] No taxid or organism supplied; all taxonomy fields remain at defaults. Consider adding values to the metadata table. [WARN] [09:49:36] [Obelisk_000307_000001_000001_1] No taxid or organism supplied; all taxonomy fields remain at defaults. Consider adding values to the metadata table. [WARN] [09:49:36] [Obelisk_000307_000001_000001_2] No taxid or organism supplied; all taxonomy fields remain at defaults. Consider adding values to the metadata table. [WARN] [09:49:36] [Obelisk_001132_000001_000001_1] No taxid or organism supplied; all taxonomy fields remain at defaults. Consider adding values to the metadata table. [WARN] [09:49:36] [Obelisk_001132_000001_000002_1] No taxid or organism supplied; all taxonomy fields remain at defaults. Consider adding values to the metadata table. [WARN] [09:49:36] [Obelisk_001702_000001_000001_1] No taxid or organism supplied; all taxonomy fields remain at defaults. Consider adding values to the metadata table. [WARN] [09:49:36] NCBI enrichment complete: enriched=0, lookup_failed=0, already_complete=20450, no_info_supplied=27, ncbi_queries=0, cache_hits_taxid=0, cache_hits_name=0. [INFO] [09:49:37] User proteins written: 20477; exact metadata matches: 20477 [INFO] [09:49:37] User protein source breakdown: DAIRY=151, OBELISKS_ORAL=27, TTENAX=20286, VIRUSES_HERVS=13 [INFO] [09:49:37] Done. Final number of records written: 917366 [INFO] [09:49:37] Output FASTA: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/AllOralsDB.v2026.215_S.fasta [INFO] [09:49:37] Output mapping: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/AllOralsDB.v2026.215_S.manifest.tsv [INFO] [09:49:37] Build summary written: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/build_summary.tsv ============================================================ [09:49:37] PHASE 2.5: Taxonomic lineage enrichment ============================================================ [INFO] [09:49:37] Enriching manifest taxonomy (lineage cache: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/taxid_lineage_cache.tsv) [INFO] [09:49:42] Rows: 917366 | id-col: protein_id | taxid-col: lineage_taxid [INFO] [09:49:43] Distinct resolvable taxids: 558 | rows that will be Unclassified: 27 [INFO] [09:49:43] Fetching 558 taxids from NCBI in 2 batch(es) (size 300, interval 0.11s) [INFO] [09:49:46] batch 1/2: resolved 300/300 [INFO] [09:49:50] batch 2/2: resolved 258/258 [INFO] [09:49:50] Wrote 558 lineages to cache /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/taxid_lineage_cache.tsv [INFO] [09:50:05] Enrichment complete: 917339 rows with lineage, 27 Unclassified. [INFO] [09:50:05] Enriched metadata: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/AllOralsDB.v2026.215_S.manifest.lineage.tsv [INFO] [09:50:06] Lineage-enriched manifest: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/AllOralsDB.v2026.215_S.manifest.lineage.tsv ============================================================ [09:50:06] PHASE 2.6: Static taxonomy sunburst ============================================================ [INFO] [09:50:06] Rendering taxonomy sunburst from /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/AllOralsDB.v2026.215_S.manifest.lineage.tsv [INFO] Rows used: 917366 | total weight: 917,366 | top-level groups: 8 [INFO] Wrote /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/AllOralsDB.v2026.215_S.taxonomy_sunburst.svg (SVG, stdlib backend, label-style=callout) [INFO] [09:50:21] Taxonomy sunburst (SVG): /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/AllOralsDB.v2026.215_S.taxonomy_sunburst.svg [INFO] rows: 917,366 [INFO] tree total: 917,366 | rings: 8 [INFO] wrote /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/AllOralsDB.v2026.215_S.taxonomy_sunburst.html (73 KB) [INFO] [09:50:36] Taxonomy sunburst (HTML): /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/AllOralsDB.v2026.215_S.taxonomy_sunburst.html ============================================================ [09:50:36] PHASE 2.7: Database methods summary ============================================================ [INFO] run label: AllOralsDB.v2026.215_S [INFO] methods summary -> /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/AllOralsDB.v2026.215_S.database_methods.md [INFO] [09:50:50] Methods summary: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/AllOralsDB.v2026.215_S.database_methods.md ============================================================ [09:50:50] PHASE 3: Package run provenance, scripts, setup files, and logs ============================================================ [INFO] [09:50:50] Copied config to run_setup/ [INFO] [09:50:50] Copied source registry to run_setup/ [INFO] [09:50:50] Copied 12 source input files to run_setup/ [INFO] [09:50:50] Copied 28 script files to run_scripts/ [INFO] [09:50:50] Slurm log moved to: run_logs/ [INFO] [09:50:50] Run setup files packaged in: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/run_setup [INFO] [09:50:50] Run scripts packaged in: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/run_scripts [INFO] [09:50:50] Run logs/checks packaged in: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/run_logs [INFO] [09:50:50] Run completed successfully. Cleaning up TMPDIR: /projects/academic/kmkauffm/kauffman/ZZ.daysDir/2026.214_maniFasta_AllOralsDB_flavor_builds/maniFasta-dev/20260803_093631_AllOralsDB.v2026.215_S/tmp