#!/bin/bash

source ${Config_file}

mkdir -p "$(dirname "$Species_resolved")"

# Set sleep rate based on whether an API key is present
# With key: 10 req/s allowed → 0.11s sleep
# Without:   3 req/s allowed → 0.4s sleep (conservative)
if [[ -n "${ncbi_api_key:-}" ]]; then
    SLEEP_SEC="0.11"
else
    SLEEP_SEC="0.4"
fi

EMAIL_FLAG=()
KEY_FLAG=()
[[ -n "${ncbi_email:-}"   ]] && EMAIL_FLAG=( --email      "$ncbi_email"   )
[[ -n "${ncbi_api_key:-}" ]] && KEY_FLAG=(   --api_key    "$ncbi_api_key" )

bash mod_I_Fetch_UserSpecifiedSpecies_INFO.sh \
  --input  "$Species_fetch_list" \
  --output "$Species_resolved"   \
  --sleep  "$SLEEP_SEC"          \
  "${EMAIL_FLAG[@]}"             \
  "${KEY_FLAG[@]}"