Protein id	Element symbol	Element name	Scope	Type	Subtype	Class	Subclass	Method	Target length	Reference sequence length	% Coverage of reference	% Identity to reference	Alignment length	Closest reference accession	Closest reference name	HMM accession	HMM description
GCA_002248115.3_00031	emrD	multidrug efflux MFS transporter EmrD	plus	AMR	AMR	EFFLUX	EFFLUX	BLASTP	394	394	100.00	99.75	394	ACN65732.1	multidrug efflux MFS transporter EmrD	NA	NA
GCA_002248115.3_00847	arsC	glutaredoxin-dependent arsenate reductase	plus	STRESS	METAL	ARSENIC	ARSENATE	HMM	140	141	98.58	78.42	139	AAA21096.1	glutaredoxin-dependent arsenate reductase	NF007456.1	glutaredoxin-dependent arsenate reductase
GCA_002248115.3_01175	oqxB19	multidrug efflux RND transporter permease subunit OqxB19	core	AMR	AMR	PHENICOL/QUINOLONE	PHENICOL/QUINOLONE	ALLELEP	1050	1050	100.00	100.00	1050	WP_004149399.1	multidrug efflux RND transporter permease subunit OqxB19	NF000037.1	multidrug efflux RND transporter permease subunit OqxB
GCA_002248115.3_01176	oqxA10	multidrug efflux RND transporter periplasmic adaptor subunit OqxA10	core	AMR	AMR	PHENICOL/QUINOLONE	PHENICOL/QUINOLONE	ALLELEP	391	391	100.00	100.00	391	WP_004149398.1	multidrug efflux RND transporter periplasmic adaptor subunit OqxA10	NF000272.1	multidrug efflux RND transporter periplasmic adaptor subunit OqxA
GCA_002248115.3_02282	asr	acid resistance repetitive basic protein Asr	plus	STRESS	ACID	NA	NA	HMM	97	102	100.00	64.15	106	BAA15331.2	acid resistance repetitive basic protein Asr	NF033636.1	acid resistance repetitive basic protein Asr
GCA_002248115.3_02692	blaSHV-1	broad-spectrum class A beta-lactamase SHV-1	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	ALLELEP	286	286	100.00	100.00	286	WP_001620095.1	broad-spectrum class A beta-lactamase SHV-1	NF000285.3	SHV family class A beta-lactamase
GCA_002248115.3_03369	kdeA	multidrug efflux MFS transporter KdeA	plus	AMR	AMR	EFFLUX	EFFLUX	EXACTP	410	410	100.00	100.00	410	ABR76310.1	multidrug efflux MFS transporter KdeA	NA	NA
GCA_002248115.3_04450	fosA	FosA5 family fosfomycin resistance glutathione transferase	core	AMR	AMR	FOSFOMYCIN	FOSFOMYCIN	BLASTP	139	139	100.00	99.28	139	WP_004146118.1	FosA5 family fosfomycin resistance glutathione transferase	NF040540.1	FosA5 family fosfomycin resistance glutathione transferase
GCA_002248115.3_05041	fieF	CDF family cation-efflux transporter FieF	plus	STRESS	METAL	NA	NA	EXACTP	300	300	100.00	100.00	300	BAB89353.1	CDF family cation-efflux transporter FieF	NA	NA
GCA_002248115.3_05162	silE	silver-binding protein SilE	plus	STRESS	METAL	SILVER	SILVER	BLASTP	143	143	100.00	91.61	143	AAD11743.1	silver-binding protein SilE	NA	NA
GCA_002248115.3_05163	silS	copper/silver sensor histidine kinase SilS	plus	STRESS	METAL	COPPER/SILVER	COPPER/SILVER	EXACTP	491	491	100.00	100.00	491	SPD96882.1	copper/silver sensor histidine kinase SilS	NA	NA
GCA_002248115.3_05164	silR	copper/silver response regulator transcription factor SilR	plus	STRESS	METAL	COPPER/SILVER	COPPER/SILVER	EXACTP	226	226	100.00	100.00	226	SPD96883.1	copper/silver response regulator transcription factor SilR	NA	NA
GCA_002248115.3_05165	silC	Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC	plus	STRESS	METAL	COPPER/SILVER	COPPER/SILVER	EXACTP	461	461	100.00	100.00	461	SPD96884.1	Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC	NA	NA
GCA_002248115.3_05166	silF	Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone SilF	plus	STRESS	METAL	COPPER/SILVER	COPPER/SILVER	BLASTP	117	117	100.00	99.15	117	KGL71342.1	Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone SilF	NA	NA
GCA_002248115.3_05167	silB	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB	plus	STRESS	METAL	COPPER/SILVER	COPPER/SILVER	BLASTP	430	430	100.00	97.67	430	AAD11748.1	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB	NA	NA
GCA_002248115.3_05168	silA	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	plus	STRESS	METAL	COPPER/SILVER	COPPER/SILVER	BLASTP	1048	1048	100.00	98.85	1048	AAD11749.1	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	NA	NA
GCA_002248115.3_05170	silP	Ag(+)-translocating P-type ATPase SilP	plus	STRESS	METAL	SILVER	SILVER	BLASTP	815	824	98.79	94.49	816	AAD11750.1	Ag(+)-translocating P-type ATPase SilP	NA	NA
GCA_002248115.3_05174	pcoA	multicopper oxidase PcoA	plus	STRESS	METAL	COPPER	COPPER	EXACTP	605	605	100.00	100.00	605	CAA58525.1	multicopper oxidase PcoA	NA	NA
GCA_002248115.3_05175	pcoB	copper-binding protein PcoB	plus	STRESS	METAL	COPPER	COPPER	BLASTP	298	296	100.00	100.00	296	CAA58526.1	copper-binding protein PcoB	NA	NA
GCA_002248115.3_05176	pcoC	copper resistance system metallochaperone PcoC	plus	STRESS	METAL	COPPER	COPPER	EXACTP	126	126	100.00	100.00	126	CAA58527.1	copper resistance system metallochaperone PcoC	NA	NA
GCA_002248115.3_05177	pcoD	copper resistance inner membrane protein PcoD	plus	STRESS	METAL	COPPER	COPPER	BLASTP	309	309	100.00	99.68	309	CAA58528.1	copper resistance inner membrane protein PcoD	NA	NA
GCA_002248115.3_05178	pcoR	copper response regulator transcription factor PcoR	plus	STRESS	METAL	COPPER	COPPER	EXACTP	226	226	100.00	100.00	226	CAA58529.1	copper response regulator transcription factor PcoR	NA	NA
GCA_002248115.3_05179	pcoS	copper resistance membrane spanning protein PcoS	plus	STRESS	METAL	COPPER	COPPER	BLASTP	466	466	100.00	99.14	466	CAA58530.1	copper resistance membrane spanning protein PcoS	NA	NA
GCA_002248115.3_05180	pcoE	copper resistance system metallochaperone PcoE	plus	STRESS	METAL	COPPER	COPPER	BLASTP	144	144	100.00	94.44	144	CAA58532.1	copper resistance system metallochaperone PcoE	NA	NA
GCA_002248115.3_05191	arsC	glutaredoxin-dependent arsenate reductase	plus	STRESS	METAL	ARSENIC	ARSENATE	EXACTP	141	141	100.00	100.00	141	BAA24824.1	glutaredoxin-dependent arsenate reductase	NF007456.1	glutaredoxin-dependent arsenate reductase
GCA_002248115.3_05192	arsB	arsenite efflux transporter membrane subunit ArsB	plus	STRESS	METAL	ARSENIC	ARSENITE	EXACTP	429	429	100.00	100.00	429	BAA24823.1	arsenite efflux transporter membrane subunit ArsB	NA	NA
GCA_002248115.3_05193	arsA	arsenite efflux transporter ATPase subunit ArsA	plus	STRESS	METAL	ARSENIC	ARSENITE	EXACTP	583	583	100.00	100.00	583	BAA24822.1	arsenite efflux transporter ATPase subunit ArsA	NA	NA
GCA_002248115.3_05194	arsD	arsenite efflux transporter metallochaperone ArsD	plus	STRESS	METAL	ARSENIC	ARSENITE	BLASTP	120	120	100.00	91.67	120	AAB09625.1	arsenite efflux transporter metallochaperone ArsD	NF033727.2	arsenite efflux transporter metallochaperone ArsD
GCA_002248115.3_05195	arsR	As(III)-sensing metalloregulatory transcriptional repressor ArsR	plus	STRESS	METAL	ARSENIC	ARSENIC	EXACTP	116	116	100.00	100.00	116	AET17094.1	As(III)-sensing metalloregulatory transcriptional repressor ArsR	NA	NA
GCA_002248115.3_05212	clpK	heat shock survival AAA family ATPase ClpK	plus	STRESS	HEAT	NA	NA	BLASTP	931	949	97.89	99.25	929	ASF80763.1	heat shock survival AAA family ATPase ClpK	NF033606.1	heat shock survival AAA family ATPase ClpK
GCA_002248115.3_05213	hsp20	small heat shock protein sHSP20	plus	STRESS	HEAT	NA	NA	EXACTP	189	189	100.00	100.00	189	CDY80020.1	small heat shock protein sHSP20	NA	NA
GCA_002248115.3_05227	merE	broad-spectrum mercury transporter MerE	plus	STRESS	METAL	MERCURY	MERCURY	BLASTP	78	78	100.00	96.15	78	AAC38236.1	broad-spectrum mercury transporter MerE	NF010310.2	broad-spectrum mercury transporter MerE
GCA_002248115.3_05228	merD	mercury resistance co-regulator MerD	plus	STRESS	METAL	MERCURY	MERCURY	BLASTP	121	121	100.00	90.08	121	AAC38221.1	mercury resistance co-regulator MerD	NF033783.1	mercury resistance co-regulator MerD
GCA_002248115.3_05229	merA	mercury(II) reductase	plus	STRESS	METAL	MERCURY	MERCURY	BLASTP	561	561	100.00	93.23	561	ACU65296.1	mercury(II) reductase	TIGR02053.1	mercury(II) reductase
GCA_002248115.3_05230	merC	organomercurial transporter MerC	plus	STRESS	METAL	MERCURY	ORGANOMERCURY	HMM	141	141	100.00	80.14	141	AAC38233.1	organomercurial transporter MerC	NF033784.1	organomercurial transporter MerC
GCA_002248115.3_05231	merP	mercury resistance system periplasmic binding protein MerP	plus	STRESS	METAL	MERCURY	MERCURY	HMM	91	91	100.00	85.71	91	AAC38219.1	mercury resistance system periplasmic binding protein MerP	TIGR02052.1	mercury resistance system periplasmic binding protein MerP
GCA_002248115.3_05232	merT	mercuric transport protein MerT	plus	STRESS	METAL	MERCURY	MERCURY	BLASTP	126	116	99.14	99.13	115	CAA70196.1	mercuric transport protein MerT	NA	NA
GCA_002248115.3_05233	merR	mercury resistance transcriptional regulator MerR	plus	STRESS	METAL	MERCURY	MERCURY	BLASTP	151	144	98.61	92.96	142	CAA77320.1	mercury resistance transcriptional regulator MerR	NF010315.0	mercury resistance transcriptional regulator MerR
GCA_002248115.3_05455	dfrA50	trimethoprim-resistant dihydrofolate reductase DfrA50	core	AMR	AMR	TRIMETHOPRIM	TRIMETHOPRIM	BLASTP	158	158	100.00	99.37	158	WP_040203768.1	trimethoprim-resistant dihydrofolate reductase DfrA50	NF047323.1	trimethoprim-resistant dihydrofolate reductase DfrA50
GCA_002248115.3_05485	blaCTX-M-14	extended-spectrum class A beta-lactamase CTX-M-14	core	AMR	AMR	BETA-LACTAM	CEPHALOSPORIN	ALLELEP	291	291	100.00	100.00	291	WP_001617865.1	extended-spectrum class A beta-lactamase CTX-M-14	NF033089.1	CTX-M family extended-spectrum class A beta-lactamase
GCA_002248115.3_05490	mph(A)	Mph(A) family macrolide 2'-phosphotransferase	core	AMR	AMR	MACROLIDE	AZITHROMYCIN/ERYTHROMYCIN/SPIRAMYCIN/TELITHROMYCIN	EXACTP	301	301	100.00	100.00	301	WP_000219391.1	Mph(A) family macrolide 2'-phosphotransferase	NF000254.1	Mph(A) family macrolide 2'-phosphotransferase
GCA_002248115.3_05493	erm(B)	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	core	AMR	AMR	LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN	CLINDAMYCIN/ERYTHROMYCIN/STREPTOGRAMIN B	BLASTP	245	245	100.00	99.59	245	WP_002321849.1	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NF012220.1	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)
GCA_002248115.3_05499	aac(3)-IIe	aminoglycoside N-acetyltransferase AAC(3)-IIe	core	AMR	AMR	AMINOGLYCOSIDE	GENTAMICIN	EXACTP	286	286	100.00	100.00	286	WP_000557452.1	aminoglycoside N-acetyltransferase AAC(3)-IIe	NF033080.0	AAC(3)-II family aminoglycoside N-acetyltransferase
GCA_002248115.3_05603	floR	chloramphenicol/florfenicol efflux MFS transporter FloR	core	AMR	AMR	PHENICOL	CHLORAMPHENICOL/FLORFENICOL	BLASTP	404	404	100.00	99.50	404	WP_000214123.1	chloramphenicol/florfenicol efflux MFS transporter FloR	NF000219.1	chloramphenicol/florfenicol efflux MFS transporter FloR
GCA_002248115.3_05606	tet(A)	tetracycline efflux MFS transporter Tet(A)	core	AMR	AMR	TETRACYCLINE	TETRACYCLINE	EXACTP	399	399	100.00	100.00	399	WP_000804063.1	tetracycline efflux MFS transporter Tet(A)	NF012193.0	tetracycline efflux MFS transporter Tet(A)
GCA_002248115.3_05609	aph(6)-Id	aminoglycoside O-phosphotransferase APH(6)-Id	core	AMR	AMR	AMINOGLYCOSIDE	STREPTOMYCIN	EXACTP	278	278	100.00	100.00	278	WP_000480968.1	aminoglycoside O-phosphotransferase APH(6)-Id	NF012171.0	APH(6)-I family aminoglycoside O-phosphotransferase
GCA_002248115.3_05610	aph(3'')-Ib	aminoglycoside O-phosphotransferase APH(3'')-Ib	core	AMR	AMR	AMINOGLYCOSIDE	STREPTOMYCIN	EXACTP	267	267	100.00	100.00	267	WP_001082319.1	aminoglycoside O-phosphotransferase APH(3'')-Ib	NF032895.1	aminoglycoside O-phosphotransferase APH(3'')-Ib
GCA_002248115.3_05611	sul2	sulfonamide-resistant dihydropteroate synthase Sul2	core	AMR	AMR	SULFONAMIDE	SULFONAMIDE	EXACTP	271	271	100.00	100.00	271	WP_001043260.1	sulfonamide-resistant dihydropteroate synthase Sul2	NF000295.1	sulfonamide-resistant dihydropteroate synthase Sul2
GCA_002248115.3_05646	blaCMY-2	extended-spectrum class C beta-lactamase CMY-2	core	AMR	AMR	BETA-LACTAM	CEPHALOSPORIN	ALLELEP	381	381	100.00	100.00	381	WP_000976514.1	extended-spectrum class C beta-lactamase CMY-2	NF000191.1	CMY-2 family class C beta-lactamase
GCA_002248115.3_05698	mcr-3.21	phosphoethanolamine--lipid A transferase MCR-3.21	core	AMR	AMR	COLISTIN	COLISTIN	ALLELEP	541	541	100.00	100.00	541	WP_094312656.1	phosphoethanolamine--lipid A transferase MCR-3.21	NF033408.5	MCR-3 family phosphoethanolamine--lipid A transferase