Protein id	Element symbol	Element name	Scope	Type	Subtype	Class	Subclass	Method	Target length	Reference sequence length	% Coverage of reference	% Identity to reference	Alignment length	Closest reference accession	Closest reference name	HMM accession	HMM description
GCA_003939355.2_00980	cxpE	chloramphenicol efflux transporter CxpE	plus	AMR	AMR	PHENICOL	CHLORAMPHENICOL	HMM	397	397	98.74	79.08	392	AKA30736.1	chloramphenicol efflux transporter CxpE	NF045801.1	chloramphenicol efflux transporter CxpE
GCA_003939355.2_01197	merR	mercury resistance transcriptional regulator MerR	plus	STRESS	METAL	MERCURY	MERCURY	BLASTP	144	144	100.00	92.36	144	CAA77320.1	mercury resistance transcriptional regulator MerR	NF010315.0	mercury resistance transcriptional regulator MerR
GCA_003939355.2_01198	merC	organomercurial transporter MerC	plus	STRESS	METAL	MERCURY	ORGANOMERCURY	HMM	141	141	100.00	79.43	141	AAC38233.1	organomercurial transporter MerC	NF033784.1	organomercurial transporter MerC
GCA_003939355.2_01199	merA	mercury(II) reductase	plus	STRESS	METAL	MERCURY	MERCURY	BLASTP	561	561	100.00	95.37	561	AAC38220.1	mercury(II) reductase	TIGR02053.1	mercury(II) reductase
GCA_003939355.2_01200	merD	mercury resistance co-regulator MerD	plus	STRESS	METAL	MERCURY	MERCURY	BLASTP	120	121	100.00	90.91	121	AAC38221.1	mercury resistance co-regulator MerD	NF033783.1	mercury resistance co-regulator MerD
GCA_003939355.2_03166	dfrA44	trimethoprim-resistant dihydrofolate reductase DfrA44	core	AMR	AMR	TRIMETHOPRIM	TRIMETHOPRIM	EXACTP	170	170	100.00	100.00	170	WP_031380727.1	trimethoprim-resistant dihydrofolate reductase DfrA44	NA	NA
GCA_003939355.2_03182	blaOXA	OXA-58 family carbapenem-hydrolyzing class D beta-lactamase	core	AMR	AMR	BETA-LACTAM	CARBAPENEM	BLASTP	257	280	91.79	100.00	257	WP_002002480.1	carbapenem-hydrolyzing class D beta-lactamase OXA-58	NF012161.0	class D beta-lactamase
GCA_003939355.2_03190	msr(E)	ABC-F type ribosomal protection protein Msr(E)	core	AMR	AMR	MACROLIDE/STREPTOGRAMIN	AZITHROMYCIN/ERYTHROMYCIN/STREPTOGRAMIN	EXACTP	491	491	100.00	100.00	491	WP_000052512.1	ABC-F type ribosomal protection protein Msr(E)	NF000168.2	Msr family ABC-F type ribosomal protection protein
GCA_003939355.2_03191	mph(E)	Mph(E) family macrolide 2'-phosphotransferase	core	AMR	AMR	MACROLIDE	ERYTHROMYCIN	EXACTP	294	294	100.00	100.00	294	WP_000155092.1	Mph(E) family macrolide 2'-phosphotransferase	NF012158.1	Mph(E) family macrolide 2'-phosphotransferase
GCA_003939355.2_03199	aph(6)-Id	aminoglycoside O-phosphotransferase APH(6)-Id	core	AMR	AMR	AMINOGLYCOSIDE	STREPTOMYCIN	EXACTP	278	278	100.00	100.00	278	WP_000480968.1	aminoglycoside O-phosphotransferase APH(6)-Id	NF012171.0	APH(6)-I family aminoglycoside O-phosphotransferase
GCA_003939355.2_03200	aph(3'')-Ib	aminoglycoside O-phosphotransferase APH(3'')-Ib	core	AMR	AMR	AMINOGLYCOSIDE	STREPTOMYCIN	PARTIALP	233	267	75.66	100.00	202	WP_001082319.1	aminoglycoside O-phosphotransferase APH(3'')-Ib	NF032896.1	APH(3'') family aminoglycoside O-phosphotransferase
GCA_003939355.2_03201	aac(3)-IId	aminoglycoside N-acetyltransferase AAC(3)-IId	core	AMR	AMR	AMINOGLYCOSIDE	GENTAMICIN	EXACTP	286	286	100.00	100.00	286	WP_000557454.1	aminoglycoside N-acetyltransferase AAC(3)-IId	NF033080.0	AAC(3)-II family aminoglycoside N-acetyltransferase
GCA_003939355.2_03274	aph(3')-VIa	aminoglycoside O-phosphotransferase APH(3')-VIa	core	AMR	AMR	AMINOGLYCOSIDE	AMIKACIN/KANAMYCIN	EXACTP	259	259	100.00	100.00	259	WP_000422636.1	aminoglycoside O-phosphotransferase APH(3')-VIa	NF033062.0	APH(3')-VI family aminoglycoside O-phosphotransferase
GCA_003939355.2_03287	sul1	sulfonamide-resistant dihydropteroate synthase Sul1	core	AMR	AMR	SULFONAMIDE	SULFONAMIDE	EXACTP	279	279	100.00	100.00	279	WP_000259031.1	sulfonamide-resistant dihydropteroate synthase Sul1	NF000294.1	sulfonamide-resistant dihydropteroate synthase Sul1
GCA_003939355.2_03288	qacEdelta1	quaternary ammonium compound efflux SMR transporter QacE delta 1	core	STRESS	BIOCIDE	QUATERNARY AMMONIUM	QUATERNARY AMMONIUM	ALLELEP	115	115	100.00	100.00	115	WP_000679427.1	quaternary ammonium compound efflux SMR transporter QacE delta 1	NF000276.2	quaternary ammonium compound efflux SMR transporter QacE
GCA_003939355.2_03289	aac(6')-Ib	AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase	core	AMR	AMR	AMINOGLYCOSIDE	GENTAMICIN	BLASTP	172	184	93.48	100.00	172	WP_003159191.1	aminoglycoside N-acetyltransferase AAC(6')-Ib4	NF033074.0	AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase
GCA_003939355.2_03290	arr-3	NAD(+)--rifampin ADP-ribosyltransferase Arr-3	core	AMR	AMR	RIFAMYCIN	RIFAMYCIN	EXACTP	150	150	100.00	100.00	150	WP_001749986.1	NAD(+)--rifampin ADP-ribosyltransferase Arr-3	NF033144.1	NAD(+)--rifampin ADP-ribosyltransferase
GCA_003939355.2_03296	aph(3')-VI	APH(3')-VI family aminoglycoside O-phosphotransferase	core	AMR	AMR	AMINOGLYCOSIDE	AMIKACIN/KANAMYCIN	EXACTP	259	259	100.00	100.00	259	WP_014386410.1	APH(3')-VI family aminoglycoside O-phosphotransferase	NF033062.0	APH(3')-VI family aminoglycoside O-phosphotransferase
GCA_003939355.2_03298	blaNDM-1	subclass B1 metallo-beta-lactamase NDM-1	core	AMR	AMR	BETA-LACTAM	CARBAPENEM	ALLELEP	270	270	100.00	100.00	270	WP_004201164.1	subclass B1 metallo-beta-lactamase NDM-1	NF000259.2	NDM family subclass B1 metallo-beta-lactamase
GCA_003939355.2_03326	sul2	sulfonamide-resistant dihydropteroate synthase Sul2	core	AMR	AMR	SULFONAMIDE	SULFONAMIDE	BLASTP	287	271	100.00	100.00	271	WP_001043260.1	sulfonamide-resistant dihydropteroate synthase Sul2	NF000295.1	sulfonamide-resistant dihydropteroate synthase Sul2
GCA_003939355.2_03327	aph(3'')-Ib	aminoglycoside O-phosphotransferase APH(3'')-Ib	core	AMR	AMR	AMINOGLYCOSIDE	STREPTOMYCIN	EXACTP	267	267	100.00	100.00	267	WP_001082319.1	aminoglycoside O-phosphotransferase APH(3'')-Ib	NF032895.1	aminoglycoside O-phosphotransferase APH(3'')-Ib
GCA_003939355.2_03328	aph(6)-Id	aminoglycoside O-phosphotransferase APH(6)-Id	core	AMR	AMR	AMINOGLYCOSIDE	STREPTOMYCIN	EXACTP	278	278	100.00	100.00	278	WP_000480968.1	aminoglycoside O-phosphotransferase APH(6)-Id	NF012171.0	APH(6)-I family aminoglycoside O-phosphotransferase
GCA_003939355.2_03330	floR	chloramphenicol/florfenicol efflux MFS transporter FloR	core	AMR	AMR	PHENICOL	CHLORAMPHENICOL/FLORFENICOL	EXACTP	404	404	100.00	100.00	404	WP_000214119.1	chloramphenicol/florfenicol efflux MFS transporter FloR	NF000219.1	chloramphenicol/florfenicol efflux MFS transporter FloR