Protein id	Element symbol	Element name	Scope	Type	Subtype	Class	Subclass	Method	Target length	Reference sequence length	% Coverage of reference	% Identity to reference	Alignment length	Closest reference accession	Closest reference name	HMM accession	HMM description
GCA_009909445.1_00065	ampC-Kaer	AmpC-Kaer family extended-spectrum class C beta-lactamase	core	AMR	AMR	BETA-LACTAM	CEPHALOSPORIN	BLASTP	386	381	100.00	97.90	381	WP_063406924.1	extended-spectrum class C beta-lactamase AmpC-Kaer-1	NF041662.1	AmpC-Kaer family extended-spectrum class C beta-lactamase
GCA_009909445.1_00617	kdeA	multidrug efflux MFS transporter KdeA	plus	AMR	AMR	EFFLUX	EFFLUX	BLASTP	410	410	99.76	97.56	409	ABR76310.1	multidrug efflux MFS transporter KdeA	NA	NA
GCA_009909445.1_00980	oqxB	multidrug efflux RND transporter permease subunit OqxB	core	AMR	AMR	PHENICOL/QUINOLONE	PHENICOL/QUINOLONE	BLASTP	1050	1050	99.90	97.43	1049	WP_012967412.1	multidrug efflux RND transporter permease subunit OqxB9	NF000037.1	multidrug efflux RND transporter permease subunit OqxB
GCA_009909445.1_02417	arsC	glutaredoxin-dependent arsenate reductase	plus	STRESS	METAL	ARSENIC	ARSENATE	HMM	144	141	99.29	87.14	140	AAB42203.1	glutaredoxin-dependent arsenate reductase	NF007456.1	glutaredoxin-dependent arsenate reductase
GCA_009909445.1_03232	iroB	salmochelin biosynthesis C-glycosyltransferase IroB	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	371	371	100.00	89.49	371	EOW04219.1	salmochelin biosynthesis C-glycosyltransferase IroB	NA	NA
GCA_009909445.1_03233	iroC	salmochelin/enterobactin export ABC transporter IroC	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	1222	1219	100.00	84.38	1223	AUH19662.1	salmochelin/enterobactin export ABC transporter IroC	NA	NA
GCA_009909445.1_03236	iroN	siderophore salmochelin receptor IroN	plus	VIRULENCE	VIRULENCE	NA	NA	BLASTP	724	724	100.00	99.86	724	AEG95593.1	siderophore salmochelin receptor IroN	NA	NA
GCA_009909445.1_03953	emrD	multidrug efflux MFS transporter EmrD	plus	AMR	AMR	EFFLUX	EFFLUX	BLASTP	394	394	100.00	96.45	394	ACN65732.1	multidrug efflux MFS transporter EmrD	NA	NA
GCA_009909445.1_04176	fieF	CDF family cation-efflux transporter FieF	plus	STRESS	METAL	NA	NA	BLASTP	298	300	99.33	93.96	298	BAB89353.1	CDF family cation-efflux transporter FieF	NA	NA
GCA_009909445.1_04434	silE	silver-binding protein SilE	plus	STRESS	METAL	SILVER	SILVER	BLASTP	143	143	100.00	91.61	143	AAD11743.1	silver-binding protein SilE	NA	NA
GCA_009909445.1_04435	silS	copper/silver sensor histidine kinase SilS	plus	STRESS	METAL	COPPER/SILVER	COPPER/SILVER	BLASTP	491	491	99.80	97.76	490	SPD96882.1	copper/silver sensor histidine kinase SilS	NA	NA
GCA_009909445.1_04436	silR	copper/silver response regulator transcription factor SilR	plus	STRESS	METAL	COPPER/SILVER	COPPER/SILVER	BLASTP	226	226	100.00	97.79	226	SPD96883.1	copper/silver response regulator transcription factor SilR	NA	NA
GCA_009909445.1_04437	silC	Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC	plus	STRESS	METAL	COPPER/SILVER	COPPER/SILVER	BLASTP	461	461	100.00	98.26	461	SPD96884.1	Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC	NA	NA
GCA_009909445.1_04438	silF	Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone SilF	plus	STRESS	METAL	COPPER/SILVER	COPPER/SILVER	BLASTP	117	117	100.00	99.15	117	KGL71342.1	Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone SilF	NA	NA
GCA_009909445.1_04439	silB	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB	plus	STRESS	METAL	COPPER/SILVER	COPPER/SILVER	BLASTP	430	430	100.00	98.37	430	AAD11748.1	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB	NA	NA
GCA_009909445.1_04440	silA	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	plus	STRESS	METAL	COPPER/SILVER	COPPER/SILVER	BLASTP	1048	1048	100.00	99.43	1048	AAD11749.1	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	NA	NA
GCA_009909445.1_04442	silP	Ag(+)-translocating P-type ATPase SilP	plus	STRESS	METAL	SILVER	SILVER	BLASTP	813	824	98.79	98.40	814	AAD11750.1	Ag(+)-translocating P-type ATPase SilP	NA	NA
GCA_009909445.1_04446	pcoA	multicopper oxidase PcoA	plus	STRESS	METAL	COPPER	COPPER	EXACTP	605	605	100.00	100.00	605	CAA58525.1	multicopper oxidase PcoA	NA	NA
GCA_009909445.1_04447	pcoB	copper-binding protein PcoB	plus	STRESS	METAL	COPPER	COPPER	BLASTP	298	296	100.00	99.66	296	CAA58526.1	copper-binding protein PcoB	NA	NA
GCA_009909445.1_04448	pcoC	copper resistance system metallochaperone PcoC	plus	STRESS	METAL	COPPER	COPPER	EXACTP	126	126	100.00	100.00	126	CAA58527.1	copper resistance system metallochaperone PcoC	NA	NA
GCA_009909445.1_04449	pcoD	copper resistance inner membrane protein PcoD	plus	STRESS	METAL	COPPER	COPPER	BLASTP	309	309	100.00	99.35	309	CAA58528.1	copper resistance inner membrane protein PcoD	NA	NA
GCA_009909445.1_04450	pcoR	copper response regulator transcription factor PcoR	plus	STRESS	METAL	COPPER	COPPER	EXACTP	226	226	100.00	100.00	226	CAA58529.1	copper response regulator transcription factor PcoR	NA	NA
GCA_009909445.1_04451	pcoS	copper resistance membrane spanning protein PcoS	plus	STRESS	METAL	COPPER	COPPER	BLASTP	466	466	100.00	99.14	466	CAA58530.1	copper resistance membrane spanning protein PcoS	NA	NA
GCA_009909445.1_04452	pcoE	copper resistance system metallochaperone PcoE	plus	STRESS	METAL	COPPER	COPPER	BLASTP	144	144	100.00	94.44	144	CAA58532.1	copper resistance system metallochaperone PcoE	NA	NA
GCA_009909445.1_04457	tet(A)	tetracycline efflux MFS transporter Tet(A)	core	AMR	AMR	TETRACYCLINE	TETRACYCLINE	EXACTP	399	399	100.00	100.00	399	WP_000804064.1	tetracycline efflux MFS transporter Tet(A)	NF012193.0	tetracycline efflux MFS transporter Tet(A)
GCA_009909445.1_04461	blaTEM-1	broad-spectrum class A beta-lactamase TEM-1	core	AMR	AMR	BETA-LACTAM	BETA-LACTAM	ALLELEP	286	286	100.00	100.00	286	WP_000027057.1	broad-spectrum class A beta-lactamase TEM-1	NF000531.2	TEM family class A beta-lactamase
GCA_009909445.1_04462	sul2	sulfonamide-resistant dihydropteroate synthase Sul2	core	AMR	AMR	SULFONAMIDE	SULFONAMIDE	EXACTP	271	271	100.00	100.00	271	WP_001043260.1	sulfonamide-resistant dihydropteroate synthase Sul2	NF000295.1	sulfonamide-resistant dihydropteroate synthase Sul2
GCA_009909445.1_04463	aph(3'')-Ib	aminoglycoside O-phosphotransferase APH(3'')-Ib	core	AMR	AMR	AMINOGLYCOSIDE	STREPTOMYCIN	PARTIALP	139	267	52.06	100.00	139	WP_001082319.1	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA
GCA_009909445.1_04464	aph(6)-Id	aminoglycoside O-phosphotransferase APH(6)-Id	core	AMR	AMR	AMINOGLYCOSIDE	STREPTOMYCIN	EXACTP	278	278	100.00	100.00	278	WP_000480968.1	aminoglycoside O-phosphotransferase APH(6)-Id	NF012171.0	APH(6)-I family aminoglycoside O-phosphotransferase
GCA_009909445.1_04467	tet(A)	tetracycline efflux MFS transporter Tet(A)	core	AMR	AMR	TETRACYCLINE	TETRACYCLINE	EXACTP	399	399	100.00	100.00	399	WP_000804063.1	tetracycline efflux MFS transporter Tet(A)	NF012193.0	tetracycline efflux MFS transporter Tet(A)
GCA_009909445.1_04470	floR	chloramphenicol/florfenicol efflux MFS transporter FloR	core	AMR	AMR	PHENICOL	CHLORAMPHENICOL/FLORFENICOL	EXACTP	404	404	100.00	100.00	404	WP_000214121.1	chloramphenicol/florfenicol efflux MFS transporter FloR	NF000219.1	chloramphenicol/florfenicol efflux MFS transporter FloR
GCA_009909445.1_04480	dfrA12	trimethoprim-resistant dihydrofolate reductase DfrA12	core	AMR	AMR	TRIMETHOPRIM	TRIMETHOPRIM	EXACTP	165	165	100.00	100.00	165	WP_001083725.1	trimethoprim-resistant dihydrofolate reductase DfrA12	NF000053.2	trimethoprim-resistant dihydrofolate reductase DfrA12
GCA_009909445.1_04481	aadA2	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	core	AMR	AMR	AMINOGLYCOSIDE	STREPTOMYCIN	BLASTP	259	263	98.48	99.61	259	WP_001206356.1	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NF012157.0	ANT(3'')-I family aminoglycoside nucleotidyltransferase
GCA_009909445.1_04482	qacEdelta1	quaternary ammonium compound efflux SMR transporter QacE delta 1	core	STRESS	BIOCIDE	QUATERNARY AMMONIUM	QUATERNARY AMMONIUM	ALLELEP	115	115	100.00	100.00	115	WP_000679427.1	quaternary ammonium compound efflux SMR transporter QacE delta 1	NF000276.2	quaternary ammonium compound efflux SMR transporter QacE
GCA_009909445.1_04483	sul1	sulfonamide-resistant dihydropteroate synthase Sul1	core	AMR	AMR	SULFONAMIDE	SULFONAMIDE	EXACTP	279	279	100.00	100.00	279	WP_000259031.1	sulfonamide-resistant dihydropteroate synthase Sul1	NF000294.1	sulfonamide-resistant dihydropteroate synthase Sul1
GCA_009909445.1_04488	aph(3')-Ia	aminoglycoside O-phosphotransferase APH(3')-Ia	core	AMR	AMR	AMINOGLYCOSIDE	KANAMYCIN	EXACTP	271	271	100.00	100.00	271	WP_000018329.1	aminoglycoside O-phosphotransferase APH(3')-Ia	NF051474.1	aminoglycoside O-phosphotransferase APH(3')-Ia
GCA_009909445.1_04492	merE	broad-spectrum mercury transporter MerE	plus	STRESS	METAL	MERCURY	MERCURY	HMM	78	78	100.00	78.21	78	AAA88371.1	broad-spectrum mercury transporter MerE	NF010310.2	broad-spectrum mercury transporter MerE
GCA_009909445.1_04493	merD	mercury resistance co-regulator MerD	plus	STRESS	METAL	MERCURY	MERCURY	HMM	120	121	100.00	82.64	121	AAC38221.1	mercury resistance co-regulator MerD	NF033783.1	mercury resistance co-regulator MerD
GCA_009909445.1_04494	merA	mercury(II) reductase	plus	STRESS	METAL	MERCURY	MERCURY	HMM	564	561	100.00	85.31	565	AAC38220.1	mercury(II) reductase	TIGR02053.1	mercury(II) reductase
GCA_009909445.1_04495	merC	organomercurial transporter MerC	plus	STRESS	METAL	MERCURY	ORGANOMERCURY	EXACTP	140	140	100.00	100.00	140	AAC33908.1	organomercurial transporter MerC	NF033784.1	organomercurial transporter MerC
GCA_009909445.1_04496	merP	mercury resistance system periplasmic binding protein MerP	plus	STRESS	METAL	MERCURY	MERCURY	BLASTP	91	91	100.00	90.11	91	AAC38219.1	mercury resistance system periplasmic binding protein MerP	TIGR02052.1	mercury resistance system periplasmic binding protein MerP
GCA_009909445.1_04497	merT	mercuric transport protein MerT	plus	STRESS	METAL	MERCURY	MERCURY	EXACTP	116	116	100.00	100.00	116	AAB59075.1	mercuric transport protein MerT	NA	NA
GCA_009909445.1_04498	merR	mercury resistance transcriptional regulator MerR	plus	STRESS	METAL	MERCURY	MERCURY	BLASTP	144	144	100.00	93.75	144	CAA77320.1	mercury resistance transcriptional regulator MerR	NF010315.0	mercury resistance transcriptional regulator MerR
GCA_009909445.1_04749	fosA	FosA5 family fosfomycin resistance glutathione transferase	core	AMR	AMR	FOSFOMYCIN	FOSFOMYCIN	BLASTP	139	139	100.00	96.40	139	WP_114473955.1	fosfomycin resistance glutathione transferase FosA9	NF040540.1	FosA5 family fosfomycin resistance glutathione transferase
GCA_009909445.1_05117	terD	tellurium resistance membrane protein TerD	plus	STRESS	METAL	TELLURIUM	TELLURIUM	BLASTP	192	192	100.00	96.35	192	AAA98292.1	tellurium resistance membrane protein TerD	NA	NA
GCA_009909445.1_05121	terZ	tellurium resistance-associated protein TerZ	plus	STRESS	METAL	TELLURIUM	TELLURIUM	BLASTP	193	193	100.00	98.45	193	AAA86846.1	tellurium resistance-associated protein TerZ	NA	NA
GCA_009909445.1_05128	terW	tellurium resistance protein TerW	plus	STRESS	METAL	TELLURIUM	TELLURIUM	EXACTP	155	155	100.00	100.00	155	AAC44736.1	tellurium resistance protein TerW	NA	NA
GCA_009909445.1_05296	blaCTX-M-65	extended-spectrum class A beta-lactamase CTX-M-65	core	AMR	AMR	BETA-LACTAM	CEPHALOSPORIN	ALLELEP	291	291	100.00	100.00	291	WP_013188475.1	extended-spectrum class A beta-lactamase CTX-M-65	NF033089.1	CTX-M family extended-spectrum class A beta-lactamase
GCA_009909445.1_05301	fosA3	fosfomycin resistance glutathione transferase FosA3	core	AMR	AMR	FOSFOMYCIN	FOSFOMYCIN	ALLELEP	138	138	100.00	100.00	138	WP_014839980.1	fosfomycin resistance glutathione transferase FosA3	NF000075.1	FosA3/FosA4 family fosfomycin resistance glutathione transferase
GCA_009909445.1_05305	dfrA12	trimethoprim-resistant dihydrofolate reductase DfrA12	core	AMR	AMR	TRIMETHOPRIM	TRIMETHOPRIM	EXACTP	165	165	100.00	100.00	165	WP_001083725.1	trimethoprim-resistant dihydrofolate reductase DfrA12	NF000053.2	trimethoprim-resistant dihydrofolate reductase DfrA12
GCA_009909445.1_05306	aadA2	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	core	AMR	AMR	AMINOGLYCOSIDE	STREPTOMYCIN	BLASTP	259	263	98.48	99.61	259	WP_001206356.1	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NF012157.0	ANT(3'')-I family aminoglycoside nucleotidyltransferase
GCA_009909445.1_05307	qacEdelta1	quaternary ammonium compound efflux SMR transporter QacE delta 1	core	STRESS	BIOCIDE	QUATERNARY AMMONIUM	QUATERNARY AMMONIUM	ALLELEP	115	115	100.00	100.00	115	WP_000679427.1	quaternary ammonium compound efflux SMR transporter QacE delta 1	NF000276.2	quaternary ammonium compound efflux SMR transporter QacE
GCA_009909445.1_05308	sul1	sulfonamide-resistant dihydropteroate synthase Sul1	core	AMR	AMR	SULFONAMIDE	SULFONAMIDE	EXACTP	279	279	100.00	100.00	279	WP_000259031.1	sulfonamide-resistant dihydropteroate synthase Sul1	NF000294.1	sulfonamide-resistant dihydropteroate synthase Sul1
GCA_009909445.1_05313	ble	bleomycin binding protein Ble-MBL	core	AMR	AMR	BLEOMYCIN	BLEOMYCIN	EXACTP	121	121	100.00	100.00	121	WP_004201167.1	bleomycin binding protein Ble-MBL	NF012202.0	bleomycin binding protein Ble-MBL
GCA_009909445.1_05314	blaNDM-9	taniborbactam-resistant subclass B1 metallo-beta-lactamase NDM-9	core	AMR	AMR	BETA-LACTAM	CARBAPENEM/TANIBORBACTAM	ALLELEP	270	270	100.00	100.00	270	WP_032495672.1	taniborbactam-resistant subclass B1 metallo-beta-lactamase NDM-9	NF000259.2	NDM family subclass B1 metallo-beta-lactamase
GCA_009909445.1_05317	merR	mercury resistance transcriptional regulator MerR	plus	STRESS	METAL	MERCURY	MERCURY	BLASTP	144	144	100.00	93.75	144	CAA77320.1	mercury resistance transcriptional regulator MerR	NF010315.0	mercury resistance transcriptional regulator MerR
GCA_009909445.1_05318	merT	mercuric transport protein MerT	plus	STRESS	METAL	MERCURY	MERCURY	EXACTP	116	116	100.00	100.00	116	AAB59075.1	mercuric transport protein MerT	NA	NA
GCA_009909445.1_05319	merP	mercury resistance system periplasmic binding protein MerP	plus	STRESS	METAL	MERCURY	MERCURY	BLASTP	91	91	100.00	90.11	91	AAC38219.1	mercury resistance system periplasmic binding protein MerP	TIGR02052.1	mercury resistance system periplasmic binding protein MerP
GCA_009909445.1_05320	merC	organomercurial transporter MerC	plus	STRESS	METAL	MERCURY	ORGANOMERCURY	EXACTP	140	140	100.00	100.00	140	AAC33908.1	organomercurial transporter MerC	NF033784.1	organomercurial transporter MerC
GCA_009909445.1_05321	merA	mercury(II) reductase	plus	STRESS	METAL	MERCURY	MERCURY	HMM	564	561	100.00	85.31	565	AAC38220.1	mercury(II) reductase	TIGR02053.1	mercury(II) reductase
GCA_009909445.1_05322	merD	mercury resistance co-regulator MerD	plus	STRESS	METAL	MERCURY	MERCURY	HMM	120	121	100.00	82.64	121	AAC38221.1	mercury resistance co-regulator MerD	NF033783.1	mercury resistance co-regulator MerD
GCA_009909445.1_05323	merE	broad-spectrum mercury transporter MerE	plus	STRESS	METAL	MERCURY	MERCURY	HMM	78	78	100.00	78.21	78	AAA88371.1	broad-spectrum mercury transporter MerE	NF010310.2	broad-spectrum mercury transporter MerE
GCA_009909445.1_05327	aph(3')-Ia	aminoglycoside O-phosphotransferase APH(3')-Ia	core	AMR	AMR	AMINOGLYCOSIDE	KANAMYCIN	EXACTP	271	271	100.00	100.00	271	WP_000018329.1	aminoglycoside O-phosphotransferase APH(3')-Ia	NF051474.1	aminoglycoside O-phosphotransferase APH(3')-Ia
GCA_009909445.1_05333	floR	chloramphenicol/florfenicol efflux MFS transporter FloR	core	AMR	AMR	PHENICOL	CHLORAMPHENICOL/FLORFENICOL	EXACTP	404	404	100.00	100.00	404	WP_000214121.1	chloramphenicol/florfenicol efflux MFS transporter FloR	NF000219.1	chloramphenicol/florfenicol efflux MFS transporter FloR