Hmm	ORF	tlen	qlen	Eval	score	start	end	Acc	Pos	Cov_seq	Cov_hmm	strand
AbiEii_0_CAS-III	GCA_013333695.2|JABCOH020000003.1_9	255	284	0.00036	15.7	5853	6617	GCA_013333695.2|JABCOH020000003.1	9	0.40784313725490196	0.352112676056338	1
AbiEii_0_CAS-III	GCA_013333695.2|JABCOH020000006.1_1	224	284	1.4e-05	20.4	2	673	GCA_013333695.2|JABCOH020000006.1	1	0.46875	0.3591549295774648	-1
AbiEii_0_CAS-III	GCA_013333695.2|JABCOH020000013.1_23	242	284	4.8e-08	28.4	22418	23143	GCA_013333695.2|JABCOH020000013.1	23	0.3512396694214876	0.2887323943661972	-1
AbiEii_0_CAS-III	GCA_013333695.2|JABCOH020000016.1_26	640	284	3.1e-05	19.2	26074	27993	GCA_013333695.2|JABCOH020000016.1	26	0.2109375	0.2746478873239437	1
AbiEii_0_CAS-III	GCA_013333695.2|JABCOH020000016.1_6	253	284	9.9e-05	17.5	6015	6773	GCA_013333695.2|JABCOH020000016.1	6	0.35968379446640314	0.323943661971831	-1
AbiEii_0_CAS-III	GCA_013333695.2|JABCOH020000021.1_37	506	284	4.9e-05	18.6	30287	31804	GCA_013333695.2|JABCOH020000021.1	37	0.08300395256916997	0.1443661971830986	-1
AbiEii_0_CAS-III	GCA_013333695.2|JABCOH020000022.1_1	255	284	1.6e-07	26.7	58	822	GCA_013333695.2|JABCOH020000022.1	1	0.3607843137254902	0.31338028169014087	-1
AbiEii_0_CAS-III	GCA_013333695.2|JABCOH020000022.1_15	260	284	6.8e-08	27.9	13195	13974	GCA_013333695.2|JABCOH020000022.1	15	0.5576923076923077	0.5070422535211268	-1
AbiEii_0_CAS-III	GCA_013333695.2|JABCOH020000022.1_24	242	284	2.3e-08	29.5	24098	24823	GCA_013333695.2|JABCOH020000022.1	24	0.5619834710743802	0.4612676056338028	-1
AbiEii_0_CAS-III	GCA_013333695.2|JABCOH020000023.1_14	352	284	5.3e-05	18.4	11483	12538	GCA_013333695.2|JABCOH020000023.1	14	0.20454545454545456	0.2852112676056338	-1
AbiEii_0_CAS-III	GCA_013333695.2|JABCOH020000023.1_27	233	284	1.3e-05	20.4	24724	25422	GCA_013333695.2|JABCOH020000023.1	27	0.6266094420600858	0.528169014084507	1
AbiEii_0_CAS-III	GCA_013333695.2|JABCOH020000023.1_46	228	284	0.00016	16.9	41761	42444	GCA_013333695.2|JABCOH020000023.1	46	0.41228070175438597	0.30633802816901406	1
AbiEii_0_CAS-III	GCA_013333695.2|JABCOH020000024.1_8	392	284	4.9e-05	18.5	5475	6650	GCA_013333695.2|JABCOH020000024.1	8	0.18622448979591838	0.16549295774647887	1
AbiEii_0_CAS-III	GCA_013333695.2|JABCOH020000030.1_31	334	284	0.00095	14.3	31717	32718	GCA_013333695.2|JABCOH020000030.1	31	0.0688622754491018	0.08098591549295775	1
AbiEii_1_CAS-III-A	GCA_013333695.2|JABCOH020000022.1_15	260	335	7e-05	17.6	13195	13974	GCA_013333695.2|JABCOH020000022.1	15	0.3576923076923077	0.28955223880597014	-1
AbiEii_2_CAS-III-C	GCA_013333695.2|JABCOH020000022.1_15	260	440	0.00062	14.6	13195	13974	GCA_013333695.2|JABCOH020000022.1	15	0.31153846153846154	0.18636363636363637	-1
Cas12d_0_CAS-V-D	GCA_013333695.2|JABCOH020000030.1_26	161	1163	0.0056	10.0	26253	26735	GCA_013333695.2|JABCOH020000030.1	26	0.2857142857142857	0.03955288048151333	1
Cas12d_0_CAS-V-D	GCA_013333695.2|JABCOH020000031.1_13	80	1163	0.00022	14.6	14236	14475	GCA_013333695.2|JABCOH020000031.1	13	0.425	0.03009458297506449	1
Cas13b_0_CAS-VI-B	GCA_013333695.2|JABCOH020000030.1_45	384	1142	0.0029	11.2	41678	42829	GCA_013333695.2|JABCOH020000030.1	45	0.09635416666666667	0.03415061295971979	-1
Cas13b_1_VIB2	GCA_013333695.2|JABCOH020000030.1_45	384	1142	0.0028	11.3	41678	42829	GCA_013333695.2|JABCOH020000030.1	45	0.09635416666666667	0.03415061295971979	-1
Cas1_0_CAS-I-II-III-IV-V-VI	GCA_013333695.2|JABCOH020000031.1_16	297	317	1.6999999999999998e-43	144.4	17640	18530	GCA_013333695.2|JABCOH020000031.1	16	0.9292929292929293	0.9873817034700315	1
Cas1_0_I-II-III	GCA_013333695.2|JABCOH020000031.1_16	297	327	7.3e-20	66.8	17640	18530	GCA_013333695.2|JABCOH020000031.1	16	0.7508417508417509	0.7675840978593272	1
Cas1_0_I-II-III-V	GCA_013333695.2|JABCOH020000031.1_16	297	315	1.5e-33	111.5	17640	18530	GCA_013333695.2|JABCOH020000031.1	16	0.7508417508417509	0.780952380952381	1
Cas1_0_IA	GCA_013333695.2|JABCOH020000031.1_16	297	347	8.1e-07	23.8	17640	18530	GCA_013333695.2|JABCOH020000031.1	16	0.40404040404040403	0.35446685878962536	1
Cas1_0_IC	GCA_013333695.2|JABCOH020000031.1_16	297	340	9.6e-09	30.3	17640	18530	GCA_013333695.2|JABCOH020000031.1	16	0.2053872053872054	0.18529411764705883	1
Cas1_0_IE	GCA_013333695.2|JABCOH020000031.1_16	297	269	0.00013	16.8	17640	18530	GCA_013333695.2|JABCOH020000031.1	16	0.6666666666666666	0.724907063197026	1
Cas1_0_II	GCA_013333695.2|JABCOH020000031.1_16	297	278	6.2e-84	277.1	17640	18530	GCA_013333695.2|JABCOH020000031.1	16	0.9292929292929293	1.0	1
Cas1_0_V	GCA_013333695.2|JABCOH020000031.1_16	297	317	1e-12	43.3	17640	18530	GCA_013333695.2|JABCOH020000031.1	16	0.9225589225589226	0.9211356466876972	1
Cas1_1_CAS-I-II-III-IV-V-VI	GCA_013333695.2|JABCOH020000031.1_16	297	261	6.5e-19	63.7	17640	18530	GCA_013333695.2|JABCOH020000031.1	16	0.734006734006734	0.9348659003831418	1
Cas1_3_CAS-I-II-III-IV-V-VI	GCA_013333695.2|JABCOH020000031.1_16	297	262	8.8e-05	17.4	17640	18530	GCA_013333695.2|JABCOH020000031.1	16	0.6666666666666666	0.7442748091603053	1
Cas1_4_CAS-I-II-III-IV-V-VI	GCA_013333695.2|JABCOH020000031.1_16	297	275	3.2000000000000003e-81	268.0	17640	18530	GCA_013333695.2|JABCOH020000031.1	16	0.9259259259259259	1.0	1
Cas1_5_CAS-I-II-III-IV-V-VI	GCA_013333695.2|JABCOH020000031.1_16	297	338	7.3e-09	30.7	17640	18530	GCA_013333695.2|JABCOH020000031.1	16	0.5622895622895623	0.5	1
Cas1_6_CAS-I-II-III-IV-V-VI	GCA_013333695.2|JABCOH020000031.1_16	297	320	2.5e-06	22.5	17640	18530	GCA_013333695.2|JABCOH020000031.1	16	0.7104377104377104	0.71875	1
Cas1_7_CAS-I-II-III-IV-V-VI	GCA_013333695.2|JABCOH020000031.1_16	297	328	7.2e-43	142.4	17640	18530	GCA_013333695.2|JABCOH020000031.1	16	0.7777777777777778	0.7682926829268293	1
Cas1_8_CAS-I-II-III-IV-V-VI	GCA_013333695.2|JABCOH020000031.1_16	297	283	7e-27	89.8	17640	18530	GCA_013333695.2|JABCOH020000031.1	16	0.7441077441077442	0.8692579505300353	1
Cas2_0_CAS-I-II-III-IV-V-VI	GCA_013333695.2|JABCOH020000031.1_17	108	90	7.6e-25	82.8	18541	18864	GCA_013333695.2|JABCOH020000031.1	17	0.8333333333333334	0.9666666666666667	1
Cas2_0_I-II-III	GCA_013333695.2|JABCOH020000031.1_17	108	96	2.5e-25	84.2	18541	18864	GCA_013333695.2|JABCOH020000031.1	17	0.8425925925925926	0.9270833333333334	1
Cas2_11_CAS-I-II-III-IV-V-VI	GCA_013333695.2|JABCOH020000031.1_17	108	71	1.8e-19	65.3	18541	18864	GCA_013333695.2|JABCOH020000031.1	17	0.7129629629629629	1.0	1
Cas2_4_CAS-I-II-III-IV-V-VI	GCA_013333695.2|JABCOH020000031.1_17	108	89	0.0002	17.3	18541	18864	GCA_013333695.2|JABCOH020000031.1	17	0.8148148148148148	0.9325842696629213	1
Cas2_5_CAS-I-II-III-IV-V-VI	GCA_013333695.2|JABCOH020000031.1_17	108	116	7.6e-40	131.3	18541	18864	GCA_013333695.2|JABCOH020000031.1	17	0.9907407407407407	0.9310344827586207	1
Cas2_7_CAS-I-II-III-IV-V-VI	GCA_013333695.2|JABCOH020000031.1_17	108	94	3.7e-05	19.7	18541	18864	GCA_013333695.2|JABCOH020000031.1	17	0.8796296296296297	0.9468085106382979	1
Cas2_9_CAS-I-II-III-IV-V-VI	GCA_013333695.2|JABCOH020000031.1_17	108	101	1.7000000000000003e-28	94.4	18541	18864	GCA_013333695.2|JABCOH020000031.1	17	0.8148148148148148	0.8712871287128713	1
Cas3HD_0_CAS-I	GCA_013333695.2|JABCOH020000030.1_58	497	203	0.0004	15.8	51870	53360	GCA_013333695.2|JABCOH020000030.1	58	0.16901408450704225	0.458128078817734	1
Cas3_0_CAS-I	GCA_013333695.2|JABCOH020000011.1_8	681	353	2.9e-06	22.1	6450	8492	GCA_013333695.2|JABCOH020000011.1	8	0.19823788546255505	0.3881019830028329	-1
Cas3_0_CAS-I	GCA_013333695.2|JABCOH020000017.1_15	950	353	5e-10	34.5	11995	14844	GCA_013333695.2|JABCOH020000017.1	15	0.15789473684210525	0.40509915014164305	-1
Cas3_0_CAS-I	GCA_013333695.2|JABCOH020000027.1_5	648	353	0.0017	13.0	3222	5165	GCA_013333695.2|JABCOH020000027.1	5	0.1388888888888889	0.22096317280453256	-1
Cas3_0_I	GCA_013333695.2|JABCOH020000011.1_8	681	358	3.2e-06	22.0	6450	8492	GCA_013333695.2|JABCOH020000011.1	8	0.1894273127753304	0.3659217877094972	-1
Cas3_0_I	GCA_013333695.2|JABCOH020000017.1_15	950	358	1.2e-09	33.2	11995	14844	GCA_013333695.2|JABCOH020000017.1	15	0.1726315789473684	0.45251396648044695	-1
Cas3_0_I	GCA_013333695.2|JABCOH020000027.1_5	648	358	0.00015	16.5	3222	5165	GCA_013333695.2|JABCOH020000027.1	5	0.19135802469135801	0.3435754189944134	-1
Cas3_0_ID	GCA_013333695.2|JABCOH020000011.1_8	681	357	3.4e-05	18.6	6450	8492	GCA_013333695.2|JABCOH020000011.1	8	0.17914831130690162	0.3389355742296919	-1
Cas3_1_CAS-I	GCA_013333695.2|JABCOH020000011.1_8	681	745	0.0028	11.5	6450	8492	GCA_013333695.2|JABCOH020000011.1	8	0.1262848751835536	0.11543624161073826	-1
Cas3_1_CAS-I-D	GCA_013333695.2|JABCOH020000011.1_8	681	353	3.1e-05	18.7	6450	8492	GCA_013333695.2|JABCOH020000011.1	8	0.1762114537444934	0.3371104815864023	-1
Cas3_1_I	GCA_013333695.2|JABCOH020000030.1_58	497	178	0.00033	16.3	51870	53360	GCA_013333695.2|JABCOH020000030.1	58	0.12072434607645875	0.37640449438202245	1
Cas3_2_CAS-I	GCA_013333695.2|JABCOH020000011.1_8	681	967	0.0001	16.0	6450	8492	GCA_013333695.2|JABCOH020000011.1	8	0.09691629955947137	0.0641158221302999	-1
Cas7_1_IB	GCA_013333695.2|JABCOH020000022.1_4	303	321	0.0045	11.6	2340	3248	GCA_013333695.2|JABCOH020000022.1	4	0.2508250825082508	0.1806853582554517	-1
Cas8a1_1_IB	GCA_013333695.2|JABCOH020000018.1_12	381	571	0.0022	11.9	9775	10917	GCA_013333695.2|JABCOH020000018.1	12	0.2283464566929134	0.11033274956217162	-1
Cas9_0_II	GCA_013333695.2|JABCOH020000031.1_13	80	830	1.2e-22	75.6	14236	14475	GCA_013333695.2|JABCOH020000031.1	13	0.85	0.08674698795180723	1
Cas9_0_II	GCA_013333695.2|JABCOH020000031.1_14	114	830	4.2e-11	37.4	14613	14954	GCA_013333695.2|JABCOH020000031.1	14	0.8070175438596491	0.1216867469879518	1
Cas9_0_II	GCA_013333695.2|JABCOH020000031.1_15	887	830	1.6e-95	316.7	14979	17639	GCA_013333695.2|JABCOH020000031.1	15	0.6065388951521984	0.6578313253012048	1
Cas9_0_II-C2	GCA_013333695.2|JABCOH020000031.1_15	887	967	1.4e-26	88.5	14979	17639	GCA_013333695.2|JABCOH020000031.1	15	0.2570462232243517	0.22543950361944157	1
Cas9_0_II-D	GCA_013333695.2|JABCOH020000031.1_13	80	853	9.2e-07	23.1	14236	14475	GCA_013333695.2|JABCOH020000031.1	13	0.85	0.07737397420867527	1
Cas9_1_CAS-II-C	GCA_013333695.2|JABCOH020000031.1_13	80	568	0.0056	11.0	14236	14475	GCA_013333695.2|JABCOH020000031.1	13	0.275	0.03873239436619718	1
Cas9_1_II	GCA_013333695.2|JABCOH020000031.1_13	80	1120	1.3e-23	78.6	14236	14475	GCA_013333695.2|JABCOH020000031.1	13	0.875	0.06696428571428571	1
Cas9_1_II	GCA_013333695.2|JABCOH020000031.1_15	887	1120	1.1e-82	274.2	14979	17639	GCA_013333695.2|JABCOH020000031.1	15	0.9898534385569335	0.7544642857142857	1
CasR_0_CAS-I-II-III-IV-V-VI	GCA_013333695.2|JABCOH020000027.1_6	101	198	0.00019	16.7	5332	5634	GCA_013333695.2|JABCOH020000027.1	6	0.37623762376237624	0.18686868686868688	1
CasR_0_CAS-I-II-III-IV-V-VI	GCA_013333695.2|JABCOH020000030.1_7	237	198	0.00033	15.9	5122	5832	GCA_013333695.2|JABCOH020000030.1	7	0.24050632911392406	0.29292929292929293	1
CasR_1_CAS-I-II-III-IV-V-VI	GCA_013333695.2|JABCOH020000027.1_6	101	218	0.0003	15.6	5332	5634	GCA_013333695.2|JABCOH020000027.1	6	0.3465346534653465	0.16055045871559634	1
CasR_1_CAS-I-II-III-IV-V-VI	GCA_013333695.2|JABCOH020000030.1_7	237	218	0.00047	14.9	5122	5832	GCA_013333695.2|JABCOH020000030.1	7	0.11814345991561181	0.12844036697247707	1
Cmr1gr7_6_CAS-III-B-III-C	GCA_013333695.2|JABCOH020000013.1_74	357	81	0.071	9.2	71471	72541	GCA_013333695.2|JABCOH020000013.1	74	0.22969187675070027	0.9135802469135802	1
Cmr5gr11_1_CAS-III-C	GCA_013333695.2|JABCOH020000001.1_3	143	180	0.0021	13.4	1124	1552	GCA_013333695.2|JABCOH020000001.1	3	0.43356643356643354	0.35	1
CorA_0_CAS-III-B-III-D	GCA_013333695.2|JABCOH020000022.1_4	303	551	6.3e-06	20.7	2340	3248	GCA_013333695.2|JABCOH020000022.1	4	0.2145214521452145	0.11252268602540835	-1
CorA_0_CAS-III-B-III-D	GCA_013333695.2|JABCOH020000026.1_29	307	551	2.9e-05	18.5	21833	22753	GCA_013333695.2|JABCOH020000026.1	29	0.3127035830618892	0.17422867513611615	-1
CorA_1_CAS-III-B	GCA_013333695.2|JABCOH020000022.1_22	714	125	0.12	7.8	19570	21711	GCA_013333695.2|JABCOH020000022.1	22	0.13585434173669467	0.576	1
Csa3_1_CAS-I-II-III-IV-V-VI	GCA_013333695.2|JABCOH020000027.1_6	101	118	0.002	14.1	5332	5634	GCA_013333695.2|JABCOH020000027.1	6	0.38613861386138615	0.3559322033898305	1
Csa5_0_IA	GCA_013333695.2|JABCOH020000007.1_6	852	107	0.0081	12.0	6686	9241	GCA_013333695.2|JABCOH020000007.1	6	0.08215962441314555	0.6448598130841121	1
Csf4_1_IVA1	GCA_013333695.2|JABCOH020000017.1_7	975	802	0.0031	11.2	3210	6134	GCA_013333695.2|JABCOH020000017.1	7	0.17435897435897435	0.2082294264339152	-1
Csf4_1_IVA1	GCA_013333695.2|JABCOH020000027.1_5	648	802	0.00016	15.5	3222	5165	GCA_013333695.2|JABCOH020000027.1	5	0.07098765432098765	0.05860349127182045	-1
Csf4_2_IVA1	GCA_013333695.2|JABCOH020000027.1_5	648	526	0.0035	11.5	3222	5165	GCA_013333695.2|JABCOH020000027.1	5	0.1404320987654321	0.17490494296577946	-1
Csn2_7_CAS-II-A	GCA_013333695.2|JABCOH020000023.1_46	228	372	0.00063	14.3	41761	42444	GCA_013333695.2|JABCOH020000023.1	46	0.32894736842105265	0.20967741935483872	1
Csx21_0_CAS-III-A	GCA_013333695.2|JABCOH020000004.1_3	357	210	0.00096	14.2	2048	3118	GCA_013333695.2|JABCOH020000004.1	3	0.3137254901960784	0.2904761904761905	-1
Csx21_0_CAS-III-A-III-D	GCA_013333695.2|JABCOH020000004.1_3	357	210	0.00099	14.1	2048	3118	GCA_013333695.2|JABCOH020000004.1	3	0.3333333333333333	0.2904761904761905	-1
Csx3_2_CAS-I-III	GCA_013333695.2|JABCOH020000009.1_2	524	277	0.00012	16.8	438	2009	GCA_013333695.2|JABCOH020000009.1	2	0.11641221374045801	0.13357400722021662	-1
Csx3_2_CAS-I-III	GCA_013333695.2|JABCOH020000021.1_37	506	277	0.00038	15.2	30287	31804	GCA_013333695.2|JABCOH020000021.1	37	0.0533596837944664	0.09747292418772563	-1
Csx3_3_CAS-I-III	GCA_013333695.2|JABCOH020000025.1_4	490	79	0.052	9.1	1248	2717	GCA_013333695.2|JABCOH020000025.1	4	0.07551020408163266	0.25316455696202533	1
CysH_0_IVB	GCA_013333695.2|JABCOH020000013.1_59	388	249	0.0016	13.7	56463	57626	GCA_013333695.2|JABCOH020000013.1	59	0.10824742268041238	0.1686746987951807	1
CysH_0_IVB	GCA_013333695.2|JABCOH020000026.1_7	282	249	0.00042	15.6	6084	6929	GCA_013333695.2|JABCOH020000026.1	7	0.12411347517730496	0.13654618473895583	-1
DEDDh_0_CAS-I-II-III-IV-V-VI	GCA_013333695.2|JABCOH020000006.1_17	184	160	4.4e-11	38.8	15514	16065	GCA_013333695.2|JABCOH020000006.1	17	0.75	0.75625	1
DEDDh_0_CAS-I-II-III-IV-V-VI	GCA_013333695.2|JABCOH020000015.1_1	328	160	0.00091	15.0	2	985	GCA_013333695.2|JABCOH020000015.1	1	0.10060975609756098	0.21875	1
RT_0_CAS-I-II-III-IV-V-VI	GCA_013333695.2|JABCOH020000017.1_10	276	213	4.7e-14	48.1	9039	9866	GCA_013333695.2|JABCOH020000017.1	10	0.7028985507246377	0.9530516431924883	-1
RT_0_CAS-III-AM-III-B	GCA_013333695.2|JABCOH020000017.1_10	276	298	2.8e-05	18.7	9039	9866	GCA_013333695.2|JABCOH020000017.1	10	0.6413043478260869	0.6140939597315436	-1
RecD_0_IVD	GCA_013333695.2|JABCOH020000008.1_53	1146	763	0.00014	15.6	47564	51001	GCA_013333695.2|JABCOH020000008.1	53	0.13699825479930192	0.1834862385321101	1
RecD_0_IVD	GCA_013333695.2|JABCOH020000010.1_13	507	763	1.6e-20	68.3	12714	14234	GCA_013333695.2|JABCOH020000010.1	13	0.45956607495069035	0.28964613368283093	-1
RecD_0_IVD	GCA_013333695.2|JABCOH020000013.1_48	699	763	6.9e-07	23.2	45422	47518	GCA_013333695.2|JABCOH020000013.1	48	0.3090128755364807	0.26605504587155965	1
htpX_0_CAS-III-B	GCA_013333695.2|JABCOH020000013.1_26	292	343	5.5e-21	70.6	24155	25030	GCA_013333695.2|JABCOH020000013.1	26	0.5958904109589042	0.5189504373177842	1