SEQF1380.2|AE004092.2	CCTyper	repeat_region	860819	861250	432	+	.	ID=SEQF1380.2|AE004092.2_1;Genome_ID=SEQF1380.2;Note=Predictor:CCtyper;Start:860819;End:861250;Consensus_Repeat:GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC;Number_of_Repeats:7;Repeat_Length:36;Average_Spacer_Length:30;Repeat_Identity:95.6;Spacer_Identity:40.5;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: II-A;Cas_Subtype_Prediction:II-A;Subtype_Probability:0.998;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1380.2|AE004092.2	CCTyper	direct_repeat	860819	860854	36	+	.	ID=SEQF1380.2|AE004092.2_1_REPEAT1;Parent=SEQF1380.2|AE004092.2_1;Note=GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1380.2|AE004092.2	CCTyper	binding_site	860855	860884	30	+	.	ID=SEQF1380.2|AE004092.2_1_SPACER1;Parent=SEQF1380.2|AE004092.2_1;Note=TGCGCTGGTTGATTTCTTCTTGCGCTTTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1380.2|AE004092.2	CCTyper	direct_repeat	860885	860920	36	+	.	ID=SEQF1380.2|AE004092.2_1_REPEAT2;Parent=SEQF1380.2|AE004092.2_1;Note=GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1380.2|AE004092.2	CCTyper	binding_site	860921	860950	30	+	.	ID=SEQF1380.2|AE004092.2_1_SPACER2;Parent=SEQF1380.2|AE004092.2_1;Note=TTATATGAACATAACTCAATTTGTAAAAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1380.2|AE004092.2	CCTyper	direct_repeat	860951	860986	36	+	.	ID=SEQF1380.2|AE004092.2_1_REPEAT3;Parent=SEQF1380.2|AE004092.2_1;Note=GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1380.2|AE004092.2	CCTyper	binding_site	860987	861016	30	+	.	ID=SEQF1380.2|AE004092.2_1_SPACER3;Parent=SEQF1380.2|AE004092.2_1;Note=AGGAATATCCGCAATAATTAATTGCGCTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1380.2|AE004092.2	CCTyper	direct_repeat	861017	861052	36	+	.	ID=SEQF1380.2|AE004092.2_1_REPEAT4;Parent=SEQF1380.2|AE004092.2_1;Note=GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1380.2|AE004092.2	CCTyper	binding_site	861053	861082	30	+	.	ID=SEQF1380.2|AE004092.2_1_SPACER4;Parent=SEQF1380.2|AE004092.2_1;Note=AGTGCCGAGGAAAAATTAGGTGCGCTTGGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1380.2|AE004092.2	CCTyper	direct_repeat	861083	861118	36	+	.	ID=SEQF1380.2|AE004092.2_1_REPEAT5;Parent=SEQF1380.2|AE004092.2_1;Note=GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1380.2|AE004092.2	CCTyper	binding_site	861119	861148	30	+	.	ID=SEQF1380.2|AE004092.2_1_SPACER5;Parent=SEQF1380.2|AE004092.2_1;Note=TAAATTTGTTTAGCAGGTAAACCGTGCTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1380.2|AE004092.2	CCTyper	direct_repeat	861149	861184	36	+	.	ID=SEQF1380.2|AE004092.2_1_REPEAT6;Parent=SEQF1380.2|AE004092.2_1;Note=GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1380.2|AE004092.2	CCTyper	binding_site	861185	861214	30	+	.	ID=SEQF1380.2|AE004092.2_1_SPACER6;Parent=SEQF1380.2|AE004092.2_1;Note=TTCAGCACACTGAGACTTGTTGAGTTCCAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1380.2|AE004092.2	CCTyper	direct_repeat	861215	861250	36	+	.	ID=SEQF1380.2|AE004092.2_1_REPEAT7;Parent=SEQF1380.2|AE004092.2_1;Note=GTTTTAGAGCTATGCTGTTTTGAATGGTCTCCATTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1380.2|AE004092.2	CCTyper	repeat_region	1283500	1283730	231	+	.	ID=SEQF1380.2|AE004092.2_2;Genome_ID=SEQF1380.2;Note=Predictor:CCtyper;Start:1283500;End:1283730;Consensus_Repeat:TATTTCAATCCACTCACCCATGAAGGGTGAGAC;Number_of_Repeats:4;Repeat_Length:33;Average_Spacer_Length:33;Repeat_Identity:94.2;Spacer_Identity:39.5;Spacer_Length_Sem:0.6;Trusted:True;Cas_Type_Prediction: I-C;Cas_Subtype_Prediction:I-C;Subtype_Probability:0.977;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1380.2|AE004092.2	CCTyper	direct_repeat	1283500	1283532	33	+	.	ID=SEQF1380.2|AE004092.2_2_REPEAT1;Parent=SEQF1380.2|AE004092.2_2;Note=TCTTTCAATCCACTCACCCATGAAGGGTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1380.2|AE004092.2	CCTyper	binding_site	1283533	1283565	33	+	.	ID=SEQF1380.2|AE004092.2_2_SPACER1;Parent=SEQF1380.2|AE004092.2_2;Note=GCTGTGACATTGCGGGATGTAATCAAAGTAAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1380.2|AE004092.2	CCTyper	direct_repeat	1283566	1283598	33	+	.	ID=SEQF1380.2|AE004092.2_2_REPEAT2;Parent=SEQF1380.2|AE004092.2_2;Note=AATTTCAATCCACTCACCCATGAAGGGTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1380.2|AE004092.2	CCTyper	binding_site	1283599	1283630	32	+	.	ID=SEQF1380.2|AE004092.2_2_SPACER2;Parent=SEQF1380.2|AE004092.2_2;Note=TAAAGCAAACCTAGCAGAAGCAGAAAATGACT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1380.2|AE004092.2	CCTyper	direct_repeat	1283631	1283663	33	+	.	ID=SEQF1380.2|AE004092.2_2_REPEAT3;Parent=SEQF1380.2|AE004092.2_2;Note=TATTTCAATCCACTCACCCATGAAGGGTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1380.2|AE004092.2	CCTyper	binding_site	1283664	1283697	34	+	.	ID=SEQF1380.2|AE004092.2_2_SPACER3;Parent=SEQF1380.2|AE004092.2_2;Note=CTGATGTAATTGGTGATTTTCGTGATATGCTTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1380.2|AE004092.2	CCTyper	direct_repeat	1283698	1283730	33	+	.	ID=SEQF1380.2|AE004092.2_2_REPEAT4;Parent=SEQF1380.2|AE004092.2_2;Note=TATTTCAATCCACTCACCCATGAAGGGTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1380.2|AE004092.2	CCTyper	OPERON	854751	860716	5966	+	.	ID=SEQF1380.2|AE004092.2@17;Genome_ID=SEQF1380.2;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Cas9_1_II,Cas1_4_CAS-I-II-III-IV-V-VI,Cas2_5_CAS-I-II-III-IV-V-VI,Csn2_1_CAS-II-A;Positions=832,833,834,835;E-values=0.00e+00,6.50e-104,1.50e-50,6.80e-109;CoverageSeq=0.996,0.928,0.99,0.982;CoverageHMM=1.0,0.996,0.905,0.995;Strand_Interference=1;Strand_Adaptation=1
SEQF1380.2|AE004092.2	CCTyper	OPERON	1283879	1291892	8014	-	.	ID=SEQF1380.2|AE004092.2@26;Genome_ID=SEQF1380.2;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type I-C;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=I-C;Best_score=21.0;Genes=Cas2_4_CAS-I-II-III-IV-V-VI,Cas1_0_IC,Cas4_0_I-II,Cas7_2_CAS-I-C,Cas8c_0_IC,Cas5_0_IC,Cas3_1_CAS-I;Positions=1263,1264,1265,1266,1267,1268,1269;E-values=3.50e-33,5.40e-148,5.40e-36,2.10e-148,3.80e-179,2.20e-101,1.30e-151;CoverageSeq=0.939,0.991,0.84,0.993,0.979,0.831,0.936;CoverageHMM=0.989,1.0,0.983,0.989,0.998,1.0,0.995;Strand_Interference=-1;Strand_Adaptation=-1
SEQF1380.2|AE004092.2	CCTyper	CDS	1284183	1285208	342	-	.	ID=SEQF1380.2|AE004092.2_1264_cas;Genome_ID=SEQF1380.2;Feature_type=CDS;Product=Cas Prediction : Cas1_0_IC;coding_strand=-;E-value=5.4e-148;Score=489.3;Coverage_Seq=0.9912280701754386;Coverage_Hmm=1.0
SEQF1380.2|AE004092.2	CCTyper	CDS	858857	859726	290	+	.	ID=SEQF1380.2|AE004092.2_833_cas;Genome_ID=SEQF1380.2;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=6.5e-104;Score=343.6;Coverage_Seq=0.9275862068965517;Coverage_Hmm=0.9963636363636363
SEQF1380.2|AE004092.2	CCTyper	CDS	1283879	1284172	98	-	.	ID=SEQF1380.2|AE004092.2_1263_cas;Genome_ID=SEQF1380.2;Feature_type=CDS;Product=Cas Prediction : Cas2_4_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=3.5e-33;Score=110.6;Coverage_Seq=0.9387755102040817;Coverage_Hmm=0.9887640449438202
SEQF1380.2|AE004092.2	CCTyper	CDS	859753	860064	104	+	.	ID=SEQF1380.2|AE004092.2_834_cas;Genome_ID=SEQF1380.2;Feature_type=CDS;Product=Cas Prediction : Cas2_5_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.5e-50;Score=167.0;Coverage_Seq=0.9903846153846154;Coverage_Hmm=0.9051724137931034
SEQF1380.2|AE004092.2	CCTyper	CDS	1289490	1291892	801	-	.	ID=SEQF1380.2|AE004092.2_1269_cas;Genome_ID=SEQF1380.2;Feature_type=CDS;Product=Cas Prediction : Cas3_1_CAS-I;coding_strand=-;E-value=1.3e-151;Score=503.1;Coverage_Seq=0.9363295880149812;Coverage_Hmm=0.9946308724832215
SEQF1380.2|AE004092.2	CCTyper	CDS	1285205	1285879	225	-	.	ID=SEQF1380.2|AE004092.2_1265_cas;Genome_ID=SEQF1380.2;Feature_type=CDS;Product=Cas Prediction : Cas4_0_I-II;coding_strand=-;E-value=5.4e-36;Score=120.8;Coverage_Seq=0.84;Coverage_Hmm=0.9833333333333333
SEQF1380.2|AE004092.2	CCTyper	CDS	1288629	1289357	243	-	.	ID=SEQF1380.2|AE004092.2_1268_cas;Genome_ID=SEQF1380.2;Feature_type=CDS;Product=Cas Prediction : Cas5_0_IC;coding_strand=-;E-value=2.2000000000000002e-101;Score=334.8;Coverage_Seq=0.831275720164609;Coverage_Hmm=1.0
SEQF1380.2|AE004092.2	CCTyper	CDS	1285881	1286729	283	-	.	ID=SEQF1380.2|AE004092.2_1266_cas;Genome_ID=SEQF1380.2;Feature_type=CDS;Product=Cas Prediction : Cas7_2_CAS-I-C;coding_strand=-;E-value=2.1e-148;Score=489.9;Coverage_Seq=0.9929328621908127;Coverage_Hmm=0.9893992932862191
SEQF1380.2|AE004092.2	CCTyper	CDS	1286734	1288629	632	-	.	ID=SEQF1380.2|AE004092.2_1267_cas;Genome_ID=SEQF1380.2;Feature_type=CDS;Product=Cas Prediction : Cas8c_0_IC;coding_strand=-;E-value=3.8e-179;Score=593.6;Coverage_Seq=0.9794303797468354;Coverage_Hmm=0.9982993197278912
SEQF1380.2|AE004092.2	CCTyper	CDS	854751	858857	1369	+	.	ID=SEQF1380.2|AE004092.2_832_cas;Genome_ID=SEQF1380.2;Feature_type=CDS;Product=Cas Prediction : Cas9_1_II;coding_strand=+;E-value=0.0;Score=1681.0;Coverage_Seq=0.9963476990504018;Coverage_Hmm=1.0
SEQF1380.2|AE004092.2	CCTyper	CDS	860054	860716	221	+	.	ID=SEQF1380.2|AE004092.2_835_cas;Genome_ID=SEQF1380.2;Feature_type=CDS;Product=Cas Prediction : Csn2_1_CAS-II-A;coding_strand=+;E-value=6.8e-109;Score=359.3;Coverage_Seq=0.9819004524886877;Coverage_Hmm=0.9954128440366973