SEQF1860.1|JH417958.1	CCTyper	repeat_region	40635	40879	245	+	.	ID=SEQF1860.1|JH417958.1_1;Genome_ID=SEQF1860.1;Note=Predictor:CCtyper;Start:40635;End:40879;Consensus_Repeat:GAATAAAAAACGTCCCTGAACCAAAGGGATTAAGAC;Number_of_Repeats:4;Repeat_Length:36;Average_Spacer_Length:33.7;Repeat_Identity:92.1;Spacer_Identity:45.3;Spacer_Length_Sem:0.3;Trusted:True;Cas_Type_Prediction: III-B;Cas_Subtype_Prediction:III-B;Subtype_Probability:0.956;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1860.1|JH417958.1	CCTyper	direct_repeat	40635	40670	36	+	.	ID=SEQF1860.1|JH417958.1_1_REPEAT1;Parent=SEQF1860.1|JH417958.1_1;Note=NNATAAAAAACGTCCCTGAACCAAAGGGATTAAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1860.1|JH417958.1	CCTyper	binding_site	40671	40704	34	+	.	ID=SEQF1860.1|JH417958.1_1_SPACER1;Parent=SEQF1860.1|JH417958.1_1;Note=AAACAGAAATCATCGAACTTCTCACCGTAGTTGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1860.1|JH417958.1	CCTyper	direct_repeat	40705	40740	36	+	.	ID=SEQF1860.1|JH417958.1_1_REPEAT2;Parent=SEQF1860.1|JH417958.1_1;Note=GAATAAAAAACGTCCCTGAACCAAAGGGATTAAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1860.1|JH417958.1	CCTyper	binding_site	40741	40774	34	+	.	ID=SEQF1860.1|JH417958.1_1_SPACER2;Parent=SEQF1860.1|JH417958.1_1;Note=CCTTCAATATCAATCTTTTCTTCATGTTTAATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1860.1|JH417958.1	CCTyper	direct_repeat	40775	40810	36	+	.	ID=SEQF1860.1|JH417958.1_1_REPEAT3;Parent=SEQF1860.1|JH417958.1_1;Note=GAATAAAAAACGTCCCTGAACCAAAGGGATTAAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1860.1|JH417958.1	CCTyper	binding_site	40811	40843	33	+	.	ID=SEQF1860.1|JH417958.1_1_SPACER3;Parent=SEQF1860.1|JH417958.1_1;Note=GCAATTTCCCAAACCTGTTGCCCTGTTGGTACT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1860.1|JH417958.1	CCTyper	direct_repeat	40844	40879	36	+	.	ID=SEQF1860.1|JH417958.1_1_REPEAT4;Parent=SEQF1860.1|JH417958.1_1;Note=GAATAAAAAACGTCCCTGAACCAAAGGGATTAGACG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1860.1|JH417958.1	CCTyper	OPERON	27092	40091	13000	+	.	ID=SEQF1860.1|JH417958.1@2;Genome_ID=SEQF1860.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-B;Complete_Interference=100%;Complete_Adaptation=NA;Best_type=III-B;Best_score=19.0;Genes=Cas3_0_CAS-I,Csm3_1_IIIAD,Cmr1gr7_2_CAS-III-B-III-C,Cas10_0_CAS-III,Cmr3gr5_7_CAS-III-B-III-C,Cmr4gr7_1_CAS-III-B-III-C,Cmr5gr11_3_CAS-III-B,Cmr6gr7_2_CAS-III-B-III-C,Cas6_10_CAS-I-II-III-IV-V-VI,Csx16_3_CAS-I-III,Csx1_7_CAS-III,Cas2_2_CAS-I-II-III-IV-V-VI,Cas1_0_CAS-I-II-III-IV-V-VI,Cas2_11_CAS-I-II-III-IV-V-VI;Positions=29,30,31,32,33,34,35,36,38,39,40,41,42,43;E-values=1.40e-06,8.20e-15,3.80e-14,3.90e-53,4.20e-75,3.30e-66,1.10e-25,4.30e-30,8.40e-88,4.80e-29,8.30e-50,3.40e-15,2.10e-69,9.00e-15;CoverageSeq=0.425,0.653,0.635,0.781,0.979,0.957,0.85,0.642,0.71,0.929,0.922,0.723,0.913,0.782;CoverageHMM=0.544,0.471,0.496,0.99,1.0,0.981,0.992,0.679,0.981,0.989,0.99,0.861,0.991,0.958;Strand_Interference=1;Strand_Adaptation=NA
SEQF1860.1|JH417967.1	CCTyper	OPERON	39249	52195	12947	+	.	ID=SEQF1860.1|JH417967.1@1;Genome_ID=SEQF1860.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type I-C;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=I-C;Best_score=21.0;Genes=Cas3_1_CAS-I,Csm3gr7_12_CAS-III-A-III-D,Cas5_1_CAS-I-C,Cas8c_1_CAS-I-C,Cas7_1_CAS-I-C,Cas4_0_I-II,Cas1_0_IC,Cas2_2_CAS-I-II-III-IV-V-VI;Positions=40,42,44,45,46,47,49,50;E-values=1.90e-57,4.90e-03,2.10e-85,1.70e-171,1.20e-118,1.10e-39,1.60e-75,6.90e-27;CoverageSeq=0.439,0.405,0.942,0.979,0.969,0.841,0.821,0.847;CoverageHMM=0.459,0.759,1.0,1.0,0.996,1.0,0.638,0.987;Strand_Interference=1;Strand_Adaptation=1
SEQF1860.1|JH417958.1	CCTyper	CDS	29921	31702	594	+	.	ID=SEQF1860.1|JH417958.1_32_cas;Genome_ID=SEQF1860.1;Feature_type=CDS;Product=Cas Prediction : Cas10_0_CAS-III;coding_strand=+;E-value=3.8999999999999997e-53;Score=178.2;Coverage_Seq=0.7811447811447811;Coverage_Hmm=0.9902152641878669
SEQF1860.1|JH417958.1	CCTyper	CDS	38562	39566	335	+	.	ID=SEQF1860.1|JH417958.1_42_cas;Genome_ID=SEQF1860.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=2.1e-69;Score=231.2;Coverage_Seq=0.9134328358208955;Coverage_Hmm=0.9905362776025236
SEQF1860.1|JH417967.1	CCTyper	CDS	50873	51643	257	+	.	ID=SEQF1860.1|JH417967.1_49_cas;Genome_ID=SEQF1860.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_IC;coding_strand=+;E-value=1.6e-75;Score=251.6;Coverage_Seq=0.8210116731517509;Coverage_Hmm=0.638235294117647
SEQF1860.1|JH417958.1	CCTyper	CDS	39831	40091	87	+	.	ID=SEQF1860.1|JH417958.1_43_cas;Genome_ID=SEQF1860.1;Feature_type=CDS;Product=Cas Prediction : Cas2_11_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=9e-15;Score=51.9;Coverage_Seq=0.7816091954022989;Coverage_Hmm=0.9577464788732394
SEQF1860.1|JH417958.1	CCTyper	CDS	38274	38555	94	+	.	ID=SEQF1860.1|JH417958.1_41_cas;Genome_ID=SEQF1860.1;Feature_type=CDS;Product=Cas Prediction : Cas2_2_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=3.4e-15;Score=53.3;Coverage_Seq=0.723404255319149;Coverage_Hmm=0.8607594936708861
SEQF1860.1|JH417967.1	CCTyper	CDS	51902	52195	98	+	.	ID=SEQF1860.1|JH417967.1_50_cas;Genome_ID=SEQF1860.1;Feature_type=CDS;Product=Cas Prediction : Cas2_2_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=6.9e-27;Score=90.7;Coverage_Seq=0.8469387755102041;Coverage_Hmm=0.9873417721518988
SEQF1860.1|JH417958.1	CCTyper	CDS	27092	28417	442	+	.	ID=SEQF1860.1|JH417958.1_29_cas;Genome_ID=SEQF1860.1;Feature_type=CDS;Product=Cas Prediction : Cas3_0_CAS-I;coding_strand=+;E-value=1.4e-06;Score=24.9;Coverage_Seq=0.4253393665158371;Coverage_Hmm=0.5439093484419264
SEQF1860.1|JH417967.1	CCTyper	CDS	39249	41492	748	+	.	ID=SEQF1860.1|JH417967.1_40_cas;Genome_ID=SEQF1860.1;Feature_type=CDS;Product=Cas Prediction : Cas3_1_CAS-I;coding_strand=+;E-value=1.9000000000000002e-57;Score=192.3;Coverage_Seq=0.4385026737967914;Coverage_Hmm=0.4590604026845638
SEQF1860.1|JH417967.1	CCTyper	CDS	48847	49488	214	+	.	ID=SEQF1860.1|JH417967.1_47_cas;Genome_ID=SEQF1860.1;Feature_type=CDS;Product=Cas Prediction : Cas4_0_I-II;coding_strand=+;E-value=1.1e-39;Score=133.3;Coverage_Seq=0.8411214953271028;Coverage_Hmm=1.0
SEQF1860.1|JH417967.1	CCTyper	CDS	45137	45811	225	+	.	ID=SEQF1860.1|JH417967.1_44_cas;Genome_ID=SEQF1860.1;Feature_type=CDS;Product=Cas Prediction : Cas5_1_CAS-I-C;coding_strand=+;E-value=2.1e-85;Score=282.8;Coverage_Seq=0.9422222222222222;Coverage_Hmm=1.0
SEQF1860.1|JH417958.1	CCTyper	CDS	35363	36646	428	+	.	ID=SEQF1860.1|JH417958.1_38_cas;Genome_ID=SEQF1860.1;Feature_type=CDS;Product=Cas Prediction : Cas6_10_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=8.4e-88;Score=291.8;Coverage_Seq=0.7102803738317757;Coverage_Hmm=0.9813664596273292
SEQF1860.1|JH417967.1	CCTyper	CDS	47705	48571	289	+	.	ID=SEQF1860.1|JH417967.1_46_cas;Genome_ID=SEQF1860.1;Feature_type=CDS;Product=Cas Prediction : Cas7_1_CAS-I-C;coding_strand=+;E-value=1.2e-118;Score=392.6;Coverage_Seq=0.9688581314878892;Coverage_Hmm=0.9964028776978417
SEQF1860.1|JH417967.1	CCTyper	CDS	45808	47694	629	+	.	ID=SEQF1860.1|JH417967.1_45_cas;Genome_ID=SEQF1860.1;Feature_type=CDS;Product=Cas Prediction : Cas8c_1_CAS-I-C;coding_strand=+;E-value=1.7e-171;Score=568.8;Coverage_Seq=0.9793322734499205;Coverage_Hmm=1.0
SEQF1860.1|JH417958.1	CCTyper	CDS	28990	29901	304	+	.	ID=SEQF1860.1|JH417958.1_31_cas;Genome_ID=SEQF1860.1;Feature_type=CDS;Product=Cas Prediction : Cmr1gr7_2_CAS-III-B-III-C;coding_strand=+;E-value=3.8e-14;Score=49.7;Coverage_Seq=0.6348684210526315;Coverage_Hmm=0.4961832061068702
SEQF1860.1|JH417958.1	CCTyper	CDS	31699	32868	390	+	.	ID=SEQF1860.1|JH417958.1_33_cas;Genome_ID=SEQF1860.1;Feature_type=CDS;Product=Cas Prediction : Cmr3gr5_7_CAS-III-B-III-C;coding_strand=+;E-value=4.1999999999999997e-75;Score=250.7;Coverage_Seq=0.9794871794871794;Coverage_Hmm=1.0
SEQF1860.1|JH417958.1	CCTyper	CDS	32893	33789	299	+	.	ID=SEQF1860.1|JH417958.1_34_cas;Genome_ID=SEQF1860.1;Feature_type=CDS;Product=Cas Prediction : Cmr4gr7_1_CAS-III-B-III-C;coding_strand=+;E-value=3.3e-66;Score=221.0;Coverage_Seq=0.9565217391304348;Coverage_Hmm=0.9805825242718447
SEQF1860.1|JH417958.1	CCTyper	CDS	33786	34166	127	+	.	ID=SEQF1860.1|JH417958.1_35_cas;Genome_ID=SEQF1860.1;Feature_type=CDS;Product=Cas Prediction : Cmr5gr11_3_CAS-III-B;coding_strand=+;E-value=1.0999999999999999e-25;Score=87.5;Coverage_Seq=0.8503937007874016;Coverage_Hmm=0.9915966386554622
SEQF1860.1|JH417958.1	CCTyper	CDS	34163	34957	265	+	.	ID=SEQF1860.1|JH417958.1_36_cas;Genome_ID=SEQF1860.1;Feature_type=CDS;Product=Cas Prediction : Cmr6gr7_2_CAS-III-B-III-C;coding_strand=+;E-value=4.3000000000000004e-30;Score=102.4;Coverage_Seq=0.6415094339622641;Coverage_Hmm=0.6793893129770993
SEQF1860.1|JH417958.1	CCTyper	CDS	28677	29039	121	+	.	ID=SEQF1860.1|JH417958.1_30_cas;Genome_ID=SEQF1860.1;Feature_type=CDS;Product=Cas Prediction : Csm3_1_IIIAD;coding_strand=+;E-value=8.2e-15;Score=52.7;Coverage_Seq=0.6528925619834711;Coverage_Hmm=0.4708994708994709
SEQF1860.1|JH417967.1	CCTyper	CDS	42936	44276	447	+	.	ID=SEQF1860.1|JH417967.1_42_cas;Genome_ID=SEQF1860.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_12_CAS-III-A-III-D;coding_strand=+;E-value=0.0049;Score=14.4;Coverage_Seq=0.40492170022371365;Coverage_Hmm=0.7587939698492462
SEQF1860.1|JH417958.1	CCTyper	CDS	36643	36939	99	+	.	ID=SEQF1860.1|JH417958.1_39_cas;Genome_ID=SEQF1860.1;Feature_type=CDS;Product=Cas Prediction : Csx16_3_CAS-I-III;coding_strand=+;E-value=4.8e-29;Score=97.7;Coverage_Seq=0.9292929292929293;Coverage_Hmm=0.989010989010989
SEQF1860.1|JH417958.1	CCTyper	CDS	36963	38159	399	+	.	ID=SEQF1860.1|JH417958.1_40_cas;Genome_ID=SEQF1860.1;Feature_type=CDS;Product=Cas Prediction : Csx1_7_CAS-III;coding_strand=+;E-value=8.3000000000000005e-50;Score=167.3;Coverage_Seq=0.9223057644110275;Coverage_Hmm=0.9902912621359223