SEQF1914.1|GL397087.1	CCTyper	repeat_region	1657564	1657733	170	+	.	ID=SEQF1914.1|GL397087.1_1;Genome_ID=SEQF1914.1;Note=Predictor:CCtyper;Start:1657564;End:1657733;Consensus_Repeat:ACACACACAATGCTGCGTGCGGCATTGA;Number_of_Repeats:3;Repeat_Length:28;Average_Spacer_Length:43;Repeat_Identity:100.0;Spacer_Identity:50.9;Spacer_Length_Sem:1.0;Trusted:True;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:IV-A2;Subtype_Probability:0.403;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1914.1|GL397087.1	CCTyper	direct_repeat	1657564	1657591	28	+	.	ID=SEQF1914.1|GL397087.1_1_REPEAT1;Parent=SEQF1914.1|GL397087.1_1;Note=ACACACACAATGCTGCGTGCGGCATTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1914.1|GL397087.1	CCTyper	binding_site	1657592	1657635	44	+	.	ID=SEQF1914.1|GL397087.1_1_SPACER1;Parent=SEQF1914.1|GL397087.1_1;Note=AACTCTCCAGTGAAGGTAATCTTCACCTTTACAGAGTTGTCTCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1914.1|GL397087.1	CCTyper	direct_repeat	1657636	1657663	28	+	.	ID=SEQF1914.1|GL397087.1_1_REPEAT2;Parent=SEQF1914.1|GL397087.1_1;Note=ACACACACAATGCTGCGTGCGGCATTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1914.1|GL397087.1	CCTyper	binding_site	1657664	1657705	42	+	.	ID=SEQF1914.1|GL397087.1_1_SPACER2;Parent=SEQF1914.1|GL397087.1_1;Note=AACCATGAGTGCGTCTCTGATGCTATTGTTCATGATGTCCCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1914.1|GL397087.1	CCTyper	direct_repeat	1657706	1657733	28	+	.	ID=SEQF1914.1|GL397087.1_1_REPEAT3;Parent=SEQF1914.1|GL397087.1_1;Note=ACACACACAATGCTGCGTGCGGCATTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF1914.1|GL397087.1	CCTyper	OPERON	478192	490946	12755	-	.	ID=SEQF1914.1|GL397087.1@11;Genome_ID=SEQF1914.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-D;Complete_Interference=67%;Complete_Adaptation=NA;Best_type=III-D;Best_score=13.0;Genes=Csm3gr7_4_CAS-III-A-III-D,Csx19_1_CAS-III-D,Csm3gr7_0_CAS-III-A-III-D,Csx10gr5_1_CAS-III-D,Csm3gr7_11_CAS-III-A-III-D,Cas10_7_CAS-III,Cas6_15_CAS-I-II-III-IV-V-VI,Csx20_1_CAS-I-III,CasR_4_CAS-III-D,CasR_4_CAS-III-D;Positions=468,469,470,471,472,473,474,475,476,477;E-values=4.00e-104,9.70e-37,7.20e-32,7.00e-13,7.80e-33,1.10e-78,1.10e-16,1.30e-35,1.30e-19,1.90e-15;CoverageSeq=0.896,0.851,0.678,0.32,0.706,0.817,0.423,0.967,0.635,0.338;CoverageHMM=0.791,0.895,0.81,0.443,0.926,0.998,1.0,0.968,0.708,0.374;Strand_Interference=-1;Strand_Adaptation=NA
SEQF1914.1|GL397087.1	CCTyper	CDS	484429	486018	530	-	.	ID=SEQF1914.1|GL397087.1_473_cas;Genome_ID=SEQF1914.1;Feature_type=CDS;Product=Cas Prediction : Cas10_7_CAS-III;coding_strand=-;E-value=1.1e-78;Score=262.1;Coverage_Seq=0.8169811320754717;Coverage_Hmm=0.9975609756097561
SEQF1914.1|GL397087.1	CCTyper	CDS	486114	486935	274	-	.	ID=SEQF1914.1|GL397087.1_474_cas;Genome_ID=SEQF1914.1;Feature_type=CDS;Product=Cas Prediction : Cas6_15_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.1e-16;Score=58.5;Coverage_Seq=0.4233576642335766;Coverage_Hmm=1.0
SEQF1914.1|GL397087.1	CCTyper	CDS	487346	489088	581	-	.	ID=SEQF1914.1|GL397087.1_476_cas;Genome_ID=SEQF1914.1;Feature_type=CDS;Product=Cas Prediction : CasR_4_CAS-III-D;coding_strand=-;E-value=1.3e-19;Score=67.8;Coverage_Seq=0.6351118760757315;Coverage_Hmm=0.7075471698113207
SEQF1914.1|GL397087.1	CCTyper	CDS	489090	490946	619	-	.	ID=SEQF1914.1|GL397087.1_477_cas;Genome_ID=SEQF1914.1;Feature_type=CDS;Product=Cas Prediction : CasR_4_CAS-III-D;coding_strand=-;E-value=1.9e-15;Score=54.0;Coverage_Seq=0.3376413570274637;Coverage_Hmm=0.37358490566037733
SEQF1914.1|GL397087.1	CCTyper	CDS	480592	481968	459	-	.	ID=SEQF1914.1|GL397087.1_470_cas;Genome_ID=SEQF1914.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_0_CAS-III-A-III-D;coding_strand=-;E-value=7.2e-32;Score=107.7;Coverage_Seq=0.6775599128540305;Coverage_Hmm=0.8095238095238095
SEQF1914.1|GL397087.1	CCTyper	CDS	483569	484426	286	-	.	ID=SEQF1914.1|GL397087.1_472_cas;Genome_ID=SEQF1914.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_11_CAS-III-A-III-D;coding_strand=-;E-value=7.800000000000001e-33;Score=110.8;Coverage_Seq=0.7062937062937062;Coverage_Hmm=0.9259259259259259
SEQF1914.1|GL397087.1	CCTyper	CDS	478192	480000	603	-	.	ID=SEQF1914.1|GL397087.1_468_cas;Genome_ID=SEQF1914.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_4_CAS-III-A-III-D;coding_strand=-;E-value=4e-104;Score=346.8;Coverage_Seq=0.8955223880597015;Coverage_Hmm=0.790625
SEQF1914.1|GL397087.1	CCTyper	CDS	481965	483569	535	-	.	ID=SEQF1914.1|GL397087.1_471_cas;Genome_ID=SEQF1914.1;Feature_type=CDS;Product=Cas Prediction : Csx10gr5_1_CAS-III-D;coding_strand=-;E-value=7e-13;Score=45.6;Coverage_Seq=0.31962616822429907;Coverage_Hmm=0.44274809160305345
SEQF1914.1|GL397087.1	CCTyper	CDS	479993	480595	201	-	.	ID=SEQF1914.1|GL397087.1_469_cas;Genome_ID=SEQF1914.1;Feature_type=CDS;Product=Cas Prediction : Csx19_1_CAS-III-D;coding_strand=-;E-value=9.7e-37;Score=123.4;Coverage_Seq=0.8507462686567164;Coverage_Hmm=0.895
SEQF1914.1|GL397087.1	CCTyper	CDS	486984	487349	122	-	.	ID=SEQF1914.1|GL397087.1_475_cas;Genome_ID=SEQF1914.1;Feature_type=CDS;Product=Cas Prediction : Csx20_1_CAS-I-III;coding_strand=-;E-value=1.3e-35;Score=119.7;Coverage_Seq=0.9672131147540983;Coverage_Hmm=0.968