SEQF2013.1|GL878548.1	CCTyper	repeat_region	543909	544670	762	+	.	ID=SEQF2013.1|GL878548.1_1;Genome_ID=SEQF2013.1;Note=Predictor:CCtyper;Start:543909;End:544670;Consensus_Repeat:GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Number_of_Repeats:12;Repeat_Length:36.0;Average_Spacer_Length:30.0;Repeat_Identity:93.5;Spacer_Identity:41.0;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:II-A;Subtype_Probability:0.549;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	direct_repeat	543909	543944	36	+	.	ID=SEQF2013.1|GL878548.1_1_REPEAT1;Parent=SEQF2013.1|GL878548.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	binding_site	543945	543974	30	+	.	ID=SEQF2013.1|GL878548.1_1_SPACER1;Parent=SEQF2013.1|GL878548.1_1;Note=CAGACGACGCAATCTATATCATCGACGCAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	direct_repeat	543975	544010	36	+	.	ID=SEQF2013.1|GL878548.1_1_REPEAT2;Parent=SEQF2013.1|GL878548.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	binding_site	544011	544040	30	+	.	ID=SEQF2013.1|GL878548.1_1_SPACER2;Parent=SEQF2013.1|GL878548.1_1;Note=CGCAGAAGCTCCGAGCACTGGCAGCGTATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	direct_repeat	544041	544076	36	+	.	ID=SEQF2013.1|GL878548.1_1_REPEAT3;Parent=SEQF2013.1|GL878548.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	binding_site	544077	544106	30	+	.	ID=SEQF2013.1|GL878548.1_1_SPACER3;Parent=SEQF2013.1|GL878548.1_1;Note=CCTTCCTCTGTCTGTTCGCTTTCCTCCAGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	direct_repeat	544107	544142	36	+	.	ID=SEQF2013.1|GL878548.1_1_REPEAT4;Parent=SEQF2013.1|GL878548.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	binding_site	544143	544172	30	+	.	ID=SEQF2013.1|GL878548.1_1_SPACER4;Parent=SEQF2013.1|GL878548.1_1;Note=CCAGACTTCTCTGAGACGTGCATCCACAGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	direct_repeat	544173	544208	36	+	.	ID=SEQF2013.1|GL878548.1_1_REPEAT5;Parent=SEQF2013.1|GL878548.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	binding_site	544209	544238	30	+	.	ID=SEQF2013.1|GL878548.1_1_SPACER5;Parent=SEQF2013.1|GL878548.1_1;Note=GTTCCAGGCTTTGATGGTTCGGCAGATTTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	direct_repeat	544239	544274	36	+	.	ID=SEQF2013.1|GL878548.1_1_REPEAT6;Parent=SEQF2013.1|GL878548.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	binding_site	544275	544304	30	+	.	ID=SEQF2013.1|GL878548.1_1_SPACER6;Parent=SEQF2013.1|GL878548.1_1;Note=ATAATCATAAGCATGACTAACACCATCTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	direct_repeat	544305	544340	36	+	.	ID=SEQF2013.1|GL878548.1_1_REPEAT7;Parent=SEQF2013.1|GL878548.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	binding_site	544341	544370	30	+	.	ID=SEQF2013.1|GL878548.1_1_SPACER7;Parent=SEQF2013.1|GL878548.1_1;Note=AAGGGATACATATAGATTTTGTTTACAGAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	direct_repeat	544371	544406	36	+	.	ID=SEQF2013.1|GL878548.1_1_REPEAT8;Parent=SEQF2013.1|GL878548.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	binding_site	544407	544436	30	+	.	ID=SEQF2013.1|GL878548.1_1_SPACER8;Parent=SEQF2013.1|GL878548.1_1;Note=TCTGAATGTACGCAAAACTCCAAGCCTTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	direct_repeat	544437	544472	36	+	.	ID=SEQF2013.1|GL878548.1_1_REPEAT9;Parent=SEQF2013.1|GL878548.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	binding_site	544473	544502	30	+	.	ID=SEQF2013.1|GL878548.1_1_SPACER9;Parent=SEQF2013.1|GL878548.1_1;Note=GTAATAATTCCTCAGAAAACAAAGAGTAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	direct_repeat	544503	544538	36	+	.	ID=SEQF2013.1|GL878548.1_1_REPEAT10;Parent=SEQF2013.1|GL878548.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	binding_site	544539	544568	30	+	.	ID=SEQF2013.1|GL878548.1_1_SPACER10;Parent=SEQF2013.1|GL878548.1_1;Note=GCAACAGGACTACGAATATTATTACGCCGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	direct_repeat	544569	544604	36	+	.	ID=SEQF2013.1|GL878548.1_1_REPEAT11;Parent=SEQF2013.1|GL878548.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	binding_site	544605	544634	30	+	.	ID=SEQF2013.1|GL878548.1_1_SPACER11;Parent=SEQF2013.1|GL878548.1_1;Note=TAGAGCAAACGCCCGCAGGTATCGCAGCCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	direct_repeat	544635	544670	36	+	.	ID=SEQF2013.1|GL878548.1_1_REPEAT12;Parent=SEQF2013.1|GL878548.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGTTTTTTTGTTATAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	repeat_region	553459	553919	461	+	.	ID=SEQF2013.1|GL878548.1-10_3;Genome_ID=SEQF2013.1;Note=Predictor:CCtyper;Start:553459;End:553919;Consensus_Repeat:GTTAGAAACCCCAATCACCTCGAGAGGGGACGGAAAC;Number_of_Repeats:7;Repeat_Length:33.7;Average_Spacer_Length:37.5;Repeat_Identity:75.3;Spacer_Identity:43.2;Spacer_Length_Sem:0.7;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.996;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	direct_repeat	553459	553481	23	+	.	ID=SEQF2013.1|GL878548.1-10_3_REPEAT1;Parent=SEQF2013.1|GL878548.1-10_3;Note=TCACCTCGGGAGGGTACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	binding_site	553482	553519	38	+	.	ID=SEQF2013.1|GL878548.1-10_3_SPACER1;Parent=SEQF2013.1|GL878548.1-10_3;Note=GGGTGCTCTTTAAAGTAATCATTAAATGTAGTTGTGTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	direct_repeat	553520	553553	34	+	.	ID=SEQF2013.1|GL878548.1-10_3_REPEAT2;Parent=SEQF2013.1|GL878548.1-10_3;Note=AGAACCCCCATTCACCTCGAGAGGGTACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	binding_site	553554	553591	38	+	.	ID=SEQF2013.1|GL878548.1-10_3_SPACER2;Parent=SEQF2013.1|GL878548.1-10_3;Note=TATCGAAACAGACCGTGACATCTTGAAGAAGACAACAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	direct_repeat	553592	553628	37	+	.	ID=SEQF2013.1|GL878548.1-10_3_REPEAT3;Parent=SEQF2013.1|GL878548.1-10_3;Note=GTTAGAAACCCCAATCACCTCGAGAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	binding_site	553629	553665	37	+	.	ID=SEQF2013.1|GL878548.1-10_3_SPACER3;Parent=SEQF2013.1|GL878548.1-10_3;Note=TAGTTTACCGTCTTGAGCTTTGATTGTGACTGTGCCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	direct_repeat	553666	553702	37	+	.	ID=SEQF2013.1|GL878548.1-10_3_REPEAT4;Parent=SEQF2013.1|GL878548.1-10_3;Note=GTTAGAAACCCCAATCACCTCGAGAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	binding_site	553703	553742	40	+	.	ID=SEQF2013.1|GL878548.1-10_3_SPACER4;Parent=SEQF2013.1|GL878548.1-10_3;Note=TAATGATGACTTGACCGTCATAGTTCATCAAACCAAGGTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	direct_repeat	553743	553776	34	+	.	ID=SEQF2013.1|GL878548.1-10_3_REPEAT5;Parent=SEQF2013.1|GL878548.1-10_3;Note=AGAAACCCCAGTCACCTCGAGAGGGTACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	binding_site	553777	553813	37	+	.	ID=SEQF2013.1|GL878548.1-10_3_SPACER5;Parent=SEQF2013.1|GL878548.1-10_3;Note=TGTTGTGCTAATTGTTTTAATATGTGGTTTCTCCGTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	direct_repeat	553814	553847	34	+	.	ID=SEQF2013.1|GL878548.1-10_3_REPEAT6;Parent=SEQF2013.1|GL878548.1-10_3;Note=AGAAACCCGATTCACCTCGAGAGGGTACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	binding_site	553848	553882	35	+	.	ID=SEQF2013.1|GL878548.1-10_3_SPACER6;Parent=SEQF2013.1|GL878548.1-10_3;Note=ATGCAAAATGAACTAGCTTCATCACTTGTAACATA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	direct_repeat	553883	553919	37	+	.	ID=SEQF2013.1|GL878548.1-10_3_REPEAT7;Parent=SEQF2013.1|GL878548.1-10_3;Note=GTAAGAAACCCCAGTTACCTCGAAAGGGTACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2013.1|GL878548.1	CCTyper	OPERON	550042	563332	13291	+	.	ID=SEQF2013.1|GL878548.1@19;Genome_ID=SEQF2013.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-A;Complete_Interference=100%;Complete_Adaptation=NA;Best_type=III-A;Best_score=18.0;Genes=Csm6_7_CAS-III,Cas1_0_CAS-I-II-III-IV-V-VI,Cas2_2_CAS-I-II-III-IV-V-VI,Cas6_0_CAS-I-II-III-IV-V-VI,Cas10_1_CAS-III,Csm2gr11_7_CAS-III-A,Csm3gr7_1_CAS-III-A-III-D,Csm4gr5_1_CAS-III-A,Csm5gr7_0_CAS-III-A-III-D,Csm6_1_CAS-III;Positions=555,558,559,560,561,562,563,564,565,566;E-values=1.00e-29,5.70e-53,1.20e-19,1.20e-26,3.40e-147,4.20e-19,2.20e-68,1.10e-40,2.10e-36,8.20e-39;CoverageSeq=0.969,0.928,0.624,0.755,0.785,0.682,0.835,0.98,0.773,0.749;CoverageHMM=0.676,0.644,0.848,0.876,0.916,0.945,0.967,0.978,0.775,0.875;Strand_Interference=1;Strand_Adaptation=NA
SEQF2013.1|GL878548.1	CCTyper	OPERON	537781	543818	6038	+	.	ID=SEQF2013.1|GL878548.1@18;Genome_ID=SEQF2013.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Cas9_1_II,Cas1_4_CAS-I-II-III-IV-V-VI,Cas2_5_CAS-I-II-III-IV-V-VI,Csn2_1_CAS-II-A;Positions=546,547,548,549;E-values=0.00e+00,2.50e-103,3.00e-50,4.00e-101;CoverageSeq=0.994,0.931,0.939,0.982;CoverageHMM=0.998,0.996,0.957,0.995;Strand_Interference=1;Strand_Adaptation=1
SEQF2013.1|GL878548.1	CCTyper	CDS	556442	558739	766	+	.	ID=SEQF2013.1|GL878548.1_561_cas;Genome_ID=SEQF2013.1;Feature_type=CDS;Product=Cas Prediction : Cas10_1_CAS-III;coding_strand=+;E-value=3.4e-147;Score=488.8;Coverage_Seq=0.7845953002610966;Coverage_Hmm=0.9159021406727829
SEQF2013.1|GL878548.1	CCTyper	CDS	551994	552656	221	+	.	ID=SEQF2013.1|GL878548.1_558_cas;Genome_ID=SEQF2013.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=5.699999999999999e-53;Score=177.1;Coverage_Seq=0.9276018099547512;Coverage_Hmm=0.6435331230283912
SEQF2013.1|GL878548.1	CCTyper	CDS	541959	542825	289	+	.	ID=SEQF2013.1|GL878548.1_547_cas;Genome_ID=SEQF2013.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=2.5e-103;Score=342.1;Coverage_Seq=0.9307958477508651;Coverage_Hmm=0.9963636363636363
SEQF2013.1|GL878548.1	CCTyper	CDS	552659	552985	109	+	.	ID=SEQF2013.1|GL878548.1_559_cas;Genome_ID=SEQF2013.1;Feature_type=CDS;Product=Cas Prediction : Cas2_2_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.2e-19;Score=67.4;Coverage_Seq=0.6238532110091743;Coverage_Hmm=0.8481012658227848
SEQF2013.1|GL878548.1	CCTyper	CDS	542822	543166	115	+	.	ID=SEQF2013.1|GL878548.1_548_cas;Genome_ID=SEQF2013.1;Feature_type=CDS;Product=Cas Prediction : Cas2_5_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=3e-50;Score=166.4;Coverage_Seq=0.9391304347826087;Coverage_Hmm=0.9568965517241379
SEQF2013.1|GL878548.1	CCTyper	CDS	555727	556461	245	+	.	ID=SEQF2013.1|GL878548.1_560_cas;Genome_ID=SEQF2013.1;Feature_type=CDS;Product=Cas Prediction : Cas6_0_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.2e-26;Score=91.4;Coverage_Seq=0.7551020408163265;Coverage_Hmm=0.8762886597938144
SEQF2013.1|GL878548.1	CCTyper	CDS	537781	541959	1393	+	.	ID=SEQF2013.1|GL878548.1_546_cas;Genome_ID=SEQF2013.1;Feature_type=CDS;Product=Cas Prediction : Cas9_1_II;coding_strand=+;E-value=0.0;Score=1107.9;Coverage_Seq=0.994256999282125;Coverage_Hmm=0.9982142857142857
SEQF2013.1|GL878548.1	CCTyper	CDS	558741	559259	173	+	.	ID=SEQF2013.1|GL878548.1_562_cas;Genome_ID=SEQF2013.1;Feature_type=CDS;Product=Cas Prediction : Csm2gr11_7_CAS-III-A;coding_strand=+;E-value=4.2e-19;Score=66.7;Coverage_Seq=0.6820809248554913;Coverage_Hmm=0.9454545454545454
SEQF2013.1|GL878548.1	CCTyper	CDS	559256	559966	237	+	.	ID=SEQF2013.1|GL878548.1_563_cas;Genome_ID=SEQF2013.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_1_CAS-III-A-III-D;coding_strand=+;E-value=2.2e-68;Score=227.4;Coverage_Seq=0.8354430379746836;Coverage_Hmm=0.9674418604651163
SEQF2013.1|GL878548.1	CCTyper	CDS	559978	560886	303	+	.	ID=SEQF2013.1|GL878548.1_564_cas;Genome_ID=SEQF2013.1;Feature_type=CDS;Product=Cas Prediction : Csm4gr5_1_CAS-III-A;coding_strand=+;E-value=1.1e-40;Score=136.9;Coverage_Seq=0.9801980198019802;Coverage_Hmm=0.9777777777777777
SEQF2013.1|GL878548.1	CCTyper	CDS	560883	562019	379	+	.	ID=SEQF2013.1|GL878548.1_565_cas;Genome_ID=SEQF2013.1;Feature_type=CDS;Product=Cas Prediction : Csm5gr7_0_CAS-III-A-III-D;coding_strand=+;E-value=2.1000000000000002e-36;Score=123.0;Coverage_Seq=0.7730870712401056;Coverage_Hmm=0.7753424657534247
SEQF2013.1|GL878548.1	CCTyper	CDS	562016	563332	439	+	.	ID=SEQF2013.1|GL878548.1_566_cas;Genome_ID=SEQF2013.1;Feature_type=CDS;Product=Cas Prediction : Csm6_1_CAS-III;coding_strand=+;E-value=8.2e-39;Score=130.6;Coverage_Seq=0.7494305239179955;Coverage_Hmm=0.875
SEQF2013.1|GL878548.1	CCTyper	CDS	550042	550803	254	+	.	ID=SEQF2013.1|GL878548.1_555_cas;Genome_ID=SEQF2013.1;Feature_type=CDS;Product=Cas Prediction : Csm6_7_CAS-III;coding_strand=+;E-value=1.0000000000000001e-29;Score=100.6;Coverage_Seq=0.968503937007874;Coverage_Hmm=0.675603217158177
SEQF2013.1|GL878548.1	CCTyper	CDS	543156	543818	221	+	.	ID=SEQF2013.1|GL878548.1_549_cas;Genome_ID=SEQF2013.1;Feature_type=CDS;Product=Cas Prediction : Csn2_1_CAS-II-A;coding_strand=+;E-value=4e-101;Score=334.3;Coverage_Seq=0.9819004524886877;Coverage_Hmm=0.9954128440366973