SEQF2018.1|GL872376.1	CCTyper	repeat_region	1101294	1101547	254	+	.	ID=SEQF2018.1|GL872376.1-17_1;Genome_ID=SEQF2018.1;Note=Predictor:CCtyper;Start:1101294;End:1101547;Consensus_Repeat:GTTTCCGTACCCTCCCGAGGTGACTGGGGTT;Number_of_Repeats:4;Repeat_Length:29.8;Average_Spacer_Length:45.0;Repeat_Identity:74.8;Spacer_Identity:57.4;Spacer_Length_Sem:3.5;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.771;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2018.1|GL872376.1	CCTyper	direct_repeat	1101294	1101316	23	+	.	ID=SEQF2018.1|GL872376.1-17_1_REPEAT1;Parent=SEQF2018.1|GL872376.1-17_1;Note=GTTTCCGTACCCTCCCGAGGTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2018.1|GL872376.1	CCTyper	binding_site	1101317	1101368	52	+	.	ID=SEQF2018.1|GL872376.1-17_1_SPACER1;Parent=SEQF2018.1|GL872376.1-17_1;Note=CTAGAGGCTTCTTACCGGATCATGGGATGATGAAGCATGGCTTTCAATGAGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2018.1|GL872376.1	CCTyper	direct_repeat	1101369	1101399	31	+	.	ID=SEQF2018.1|GL872376.1-17_1_REPEAT2;Parent=SEQF2018.1|GL872376.1-17_1;Note=GTTTCCGTACCCTCCCGAGGTGACTGGGGTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2018.1|GL872376.1	CCTyper	binding_site	1101400	1101441	42	+	.	ID=SEQF2018.1|GL872376.1-17_1_SPACER2;Parent=SEQF2018.1|GL872376.1-17_1;Note=CTTACCGGATCATGGGATGATGAAGCATGGCTTTCAATGAGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2018.1|GL872376.1	CCTyper	direct_repeat	1101442	1101472	31	+	.	ID=SEQF2018.1|GL872376.1-17_1_REPEAT3;Parent=SEQF2018.1|GL872376.1-17_1;Note=GTTTCCGTACCCTCCCGAGGTGACTGGGGTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2018.1|GL872376.1	CCTyper	binding_site	1101473	1101513	41	+	.	ID=SEQF2018.1|GL872376.1-17_1_SPACER3;Parent=SEQF2018.1|GL872376.1-17_1;Note=CTTACAGAATTAGTAAATATCCAGAATACAATACATTTTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2018.1|GL872376.1	CCTyper	direct_repeat	1101514	1101547	34	+	.	ID=SEQF2018.1|GL872376.1-17_1_REPEAT4;Parent=SEQF2018.1|GL872376.1-17_1;Note=GTTTCCGTCCCCTCTCGAGGTGAATCGGGTTTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2018.1|GL872376.1	CCTyper	repeat_region	1101808	1102493	686	+	.	ID=SEQF2018.1|GL872376.1-17_2;Genome_ID=SEQF2018.1;Note=Predictor:CCtyper;Start:1101808;End:1102493;Consensus_Repeat:GTTTCCGTCCCCTCTCGAGGTGACTGGGG;Number_of_Repeats:10;Repeat_Length:31.8;Average_Spacer_Length:40.9;Repeat_Identity:65.4;Spacer_Identity:42.7;Spacer_Length_Sem:2.7;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.992;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2018.1|GL872376.1	CCTyper	direct_repeat	1101808	1101844	37	+	.	ID=SEQF2018.1|GL872376.1-17_2_REPEAT1;Parent=SEQF2018.1|GL872376.1-17_2;Note=GTTTCCGCCCCCTTTCGAGGTAACTGGGGTGTCTTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2018.1|GL872376.1	CCTyper	binding_site	1101845	1101881	37	+	.	ID=SEQF2018.1|GL872376.1-17_2_SPACER1;Parent=SEQF2018.1|GL872376.1-17_2;Note=CGAGGGTTTTCCGTTCCTAAGCCATAAACGGTAGGGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2018.1|GL872376.1	CCTyper	direct_repeat	1101882	1101915	34	+	.	ID=SEQF2018.1|GL872376.1-17_2_REPEAT2;Parent=SEQF2018.1|GL872376.1-17_2;Note=GTTTCCGTACCCTCTCGAGGTGAATGGGGGTTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2018.1|GL872376.1	CCTyper	binding_site	1101916	1101954	39	+	.	ID=SEQF2018.1|GL872376.1-17_2_SPACER2;Parent=SEQF2018.1|GL872376.1-17_2;Note=TACCTATCGGCCAGAATTTTACAGGATAGTCATGGTTAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2018.1|GL872376.1	CCTyper	direct_repeat	1101955	1101990	36	+	.	ID=SEQF2018.1|GL872376.1-17_2_REPEAT3;Parent=SEQF2018.1|GL872376.1-17_2;Note=TTTCCGTCCCCTTTCGAGGTAACTGGAGTTTCTTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2018.1|GL872376.1	CCTyper	binding_site	1101991	1102026	36	+	.	ID=SEQF2018.1|GL872376.1-17_2_SPACER3;Parent=SEQF2018.1|GL872376.1-17_2;Note=GGATGACTGTCAAACGGAACAGTGAGATTCATTCTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2018.1|GL872376.1	CCTyper	direct_repeat	1102027	1102057	31	+	.	ID=SEQF2018.1|GL872376.1-17_2_REPEAT4;Parent=SEQF2018.1|GL872376.1-17_2;Note=GTTTCCGTACCCTCCCGAGGTGAATGGGGTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2018.1|GL872376.1	CCTyper	binding_site	1102058	1102098	41	+	.	ID=SEQF2018.1|GL872376.1-17_2_SPACER4;Parent=SEQF2018.1|GL872376.1-17_2;Note=ATTACGTTTTGTCTATGACATCTACCGAGATAAAAATTAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2018.1|GL872376.1	CCTyper	direct_repeat	1102099	1102132	34	+	.	ID=SEQF2018.1|GL872376.1-17_2_REPEAT5;Parent=SEQF2018.1|GL872376.1-17_2;Note=GTTTCCGTACCCTCTCGAGGCGAATGGGGGTTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2018.1|GL872376.1	CCTyper	binding_site	1102133	1102172	40	+	.	ID=SEQF2018.1|GL872376.1-17_2_SPACER5;Parent=SEQF2018.1|GL872376.1-17_2;Note=TACATGATGGGTTAACCTATGTAATCTTCATTGACGAGTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2018.1|GL872376.1	CCTyper	direct_repeat	1102173	1102206	34	+	.	ID=SEQF2018.1|GL872376.1-17_2_REPEAT6;Parent=SEQF2018.1|GL872376.1-17_2;Note=GTTTCCGTACCCTCTCGAGGTGACTGGGGTTTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2018.1|GL872376.1	CCTyper	binding_site	1102207	1102245	39	+	.	ID=SEQF2018.1|GL872376.1-17_2_SPACER6;Parent=SEQF2018.1|GL872376.1-17_2;Note=TACTAAAAGGAGTTTTCATGGCAAAAATTGAAGATTTTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2018.1|GL872376.1	CCTyper	direct_repeat	1102246	1102266	21	+	.	ID=SEQF2018.1|GL872376.1-17_2_REPEAT7;Parent=SEQF2018.1|GL872376.1-17_2;Note=AGTTTCCGTCCCCTCTCGAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2018.1|GL872376.1	CCTyper	binding_site	1102267	1102328	62	+	.	ID=SEQF2018.1|GL872376.1-17_2_SPACER7;Parent=SEQF2018.1|GL872376.1-17_2;Note=CGAATCGGTTTTCTTACTTACGGGACTGAAGAGTATGAGTCAGATCGCGGTATGTTCCCGTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2018.1|GL872376.1	CCTyper	direct_repeat	1102329	1102356	28	+	.	ID=SEQF2018.1|GL872376.1-17_2_REPEAT8;Parent=SEQF2018.1|GL872376.1-17_2;Note=CCCTCTCGAGGTGATTGGGGGTTCTTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2018.1|GL872376.1	CCTyper	binding_site	1102357	1102391	35	+	.	ID=SEQF2018.1|GL872376.1-17_2_SPACER8;Parent=SEQF2018.1|GL872376.1-17_2;Note=ACAACTACATTTAATGATTACTTTAAAGAGCACCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2018.1|GL872376.1	CCTyper	direct_repeat	1102392	1102425	34	+	.	ID=SEQF2018.1|GL872376.1-17_2_REPEAT9;Parent=SEQF2018.1|GL872376.1-17_2;Note=GTTTCCGTACCCTCCCGAGGTGACTAGGATTTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2018.1|GL872376.1	CCTyper	binding_site	1102426	1102464	39	+	.	ID=SEQF2018.1|GL872376.1-17_2_SPACER9;Parent=SEQF2018.1|GL872376.1-17_2;Note=TATTATTGTGGATCCAGAGAATGAATATACGGATATTGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2018.1|GL872376.1	CCTyper	direct_repeat	1102465	1102493	29	+	.	ID=SEQF2018.1|GL872376.1-17_2_REPEAT10;Parent=SEQF2018.1|GL872376.1-17_2;Note=GTTTCCGTCCCCTCTCGAGGTGACTGGGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2018.1|GL872376.1	CCTyper	repeat_region	1102684	1102849	166	+	.	ID=SEQF2018.1|GL872376.1-17_3;Genome_ID=SEQF2018.1;Note=Predictor:CCtyper;Start:1102684;End:1102849;Consensus_Repeat:GTTTCCGTCCTCTCGCGAGGTGA;Number_of_Repeats:3;Repeat_Length:30.3;Average_Spacer_Length:37.5;Repeat_Identity:65.4;Spacer_Identity:41.5;Spacer_Length_Sem:0.5;Trusted:True;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.596;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2018.1|GL872376.1	CCTyper	direct_repeat	1102684	1102717	34	+	.	ID=SEQF2018.1|GL872376.1-17_3_REPEAT1;Parent=SEQF2018.1|GL872376.1-17_3;Note=GTTTCCGTCCCCTCTCGAGGTGACTGGGGGTTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2018.1|GL872376.1	CCTyper	binding_site	1102718	1102754	37	+	.	ID=SEQF2018.1|GL872376.1-17_3_SPACER1;Parent=SEQF2018.1|GL872376.1-17_3;Note=TACGCAATAAAGAGGTATTTCAAATGGCATCAAGCTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2018.1|GL872376.1	CCTyper	direct_repeat	1102755	1102788	34	+	.	ID=SEQF2018.1|GL872376.1-17_3_REPEAT2;Parent=SEQF2018.1|GL872376.1-17_3;Note=GTTTCCGTCCCCTCTCGAGGAGACTGGGCTTTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2018.1|GL872376.1	CCTyper	binding_site	1102789	1102826	38	+	.	ID=SEQF2018.1|GL872376.1-17_3_SPACER2;Parent=SEQF2018.1|GL872376.1-17_3;Note=TACACTATCTCCTGAAGTGTTAACGCAGATAGGGTTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2018.1|GL872376.1	CCTyper	direct_repeat	1102827	1102849	23	+	.	ID=SEQF2018.1|GL872376.1-17_3_REPEAT3;Parent=SEQF2018.1|GL872376.1-17_3;Note=GTTTCCGTCCTCTCGCGAGGTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2018.1|GL872376.1	CCTyper	OPERON	1093416	1106488	13073	-	.	ID=SEQF2018.1|GL872376.1@20;Genome_ID=SEQF2018.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-A;Complete_Interference=100%;Complete_Adaptation=NA;Best_type=III-A;Best_score=18.0;Genes=Csm6_1_CAS-III,Csm5gr7_0_CAS-III-A-III-D,Csm4gr5_1_CAS-III-A,Csm3gr7_1_CAS-III-A-III-D,Csm2gr11_7_CAS-III-A,Cas10_1_CAS-III,Cas6_0_CAS-I-II-III-IV-V-VI,Cas2_2_CAS-I-II-III-IV-V-VI,Cas1_0_CAS-I-II-III-IV-V-VI,Cas1_0_CAS-I-II-III-IV-V-VI,Csm6_7_CAS-III;Positions=1027,1028,1029,1030,1031,1032,1033,1035,1036,1037,1039;E-values=5.10e-43,5.30e-36,1.00e-39,1.60e-68,2.20e-19,1.50e-142,1.20e-26,5.00e-20,5.50e-48,2.60e-22,3.20e-30;CoverageSeq=0.752,0.739,0.977,0.84,0.636,0.79,0.755,0.624,0.917,0.935,0.965;CoverageHMM=0.886,0.737,0.975,0.972,0.873,0.87,0.876,0.848,0.521,0.36,0.673;Strand_Interference=-1;Strand_Adaptation=NA
SEQF2018.1|GL872376.1	CCTyper	CDS	1098009	1100141	711	-	.	ID=SEQF2018.1|GL872376.1_1032_cas;Genome_ID=SEQF2018.1;Feature_type=CDS;Product=Cas Prediction : Cas10_1_CAS-III;coding_strand=-;E-value=1.4999999999999999e-142;Score=473.5;Coverage_Seq=0.790436005625879;Coverage_Hmm=0.8700305810397554
SEQF2018.1|GL872376.1	CCTyper	CDS	1103957	1104499	181	-	.	ID=SEQF2018.1|GL872376.1_1036_cas;Genome_ID=SEQF2018.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=5.5e-48;Score=160.7;Coverage_Seq=0.9171270718232044;Coverage_Hmm=0.5205047318611987
SEQF2018.1|GL872376.1	CCTyper	CDS	1104508	1104876	123	-	.	ID=SEQF2018.1|GL872376.1_1037_cas;Genome_ID=SEQF2018.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=2.6e-22;Score=76.3;Coverage_Seq=0.9349593495934959;Coverage_Hmm=0.35962145110410093
SEQF2018.1|GL872376.1	CCTyper	CDS	1103628	1103954	109	-	.	ID=SEQF2018.1|GL872376.1_1035_cas;Genome_ID=SEQF2018.1;Feature_type=CDS;Product=Cas Prediction : Cas2_2_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=5e-20;Score=68.6;Coverage_Seq=0.6238532110091743;Coverage_Hmm=0.8481012658227848
SEQF2018.1|GL872376.1	CCTyper	CDS	1100287	1101021	245	-	.	ID=SEQF2018.1|GL872376.1_1033_cas;Genome_ID=SEQF2018.1;Feature_type=CDS;Product=Cas Prediction : Cas6_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.2e-26;Score=91.4;Coverage_Seq=0.7551020408163265;Coverage_Hmm=0.8762886597938144
SEQF2018.1|GL872376.1	CCTyper	CDS	1097489	1098007	173	-	.	ID=SEQF2018.1|GL872376.1_1031_cas;Genome_ID=SEQF2018.1;Feature_type=CDS;Product=Cas Prediction : Csm2gr11_7_CAS-III-A;coding_strand=-;E-value=2.2e-19;Score=67.5;Coverage_Seq=0.6358381502890174;Coverage_Hmm=0.8727272727272727
SEQF2018.1|GL872376.1	CCTyper	CDS	1096782	1097492	237	-	.	ID=SEQF2018.1|GL872376.1_1030_cas;Genome_ID=SEQF2018.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_1_CAS-III-A-III-D;coding_strand=-;E-value=1.6e-68;Score=227.8;Coverage_Seq=0.8396624472573839;Coverage_Hmm=0.9720930232558139
SEQF2018.1|GL872376.1	CCTyper	CDS	1095862	1096770	303	-	.	ID=SEQF2018.1|GL872376.1_1029_cas;Genome_ID=SEQF2018.1;Feature_type=CDS;Product=Cas Prediction : Csm4gr5_1_CAS-III-A;coding_strand=-;E-value=1.0000000000000001e-39;Score=133.7;Coverage_Seq=0.976897689768977;Coverage_Hmm=0.9746031746031746
SEQF2018.1|GL872376.1	CCTyper	CDS	1094729	1095865	379	-	.	ID=SEQF2018.1|GL872376.1_1028_cas;Genome_ID=SEQF2018.1;Feature_type=CDS;Product=Cas Prediction : Csm5gr7_0_CAS-III-A-III-D;coding_strand=-;E-value=5.3000000000000005e-36;Score=121.7;Coverage_Seq=0.7387862796833773;Coverage_Hmm=0.736986301369863
SEQF2018.1|GL872376.1	CCTyper	CDS	1093416	1094732	439	-	.	ID=SEQF2018.1|GL872376.1_1027_cas;Genome_ID=SEQF2018.1;Feature_type=CDS;Product=Cas Prediction : Csm6_1_CAS-III;coding_strand=-;E-value=5.1e-43;Score=144.4;Coverage_Seq=0.7517084282460137;Coverage_Hmm=0.8861111111111111
SEQF2018.1|GL872376.1	CCTyper	CDS	1105727	1106488	254	-	.	ID=SEQF2018.1|GL872376.1_1039_cas;Genome_ID=SEQF2018.1;Feature_type=CDS;Product=Cas Prediction : Csm6_7_CAS-III;coding_strand=-;E-value=3.2e-30;Score=102.2;Coverage_Seq=0.9645669291338582;Coverage_Hmm=0.6729222520107239