SEQF2064.1|JH590846.1	CCTyper	repeat_region	167767	168658	892	+	.	ID=SEQF2064.1|JH590846.1_1;Genome_ID=SEQF2064.1;Note=Predictor:CCtyper;Start:167767;End:168658;Consensus_Repeat:GTTTCAGATCTATCTTAAGTTACATTACTCTCAAAC;Number_of_Repeats:14;Repeat_Length:36;Average_Spacer_Length:29.8;Repeat_Identity:100.0;Spacer_Identity:41.1;Spacer_Length_Sem:0.1;Trusted:True;Cas_Type_Prediction: II-A;Cas_Subtype_Prediction:II-A;Subtype_Probability:0.966;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590846.1	CCTyper	direct_repeat	167767	167802	36	+	.	ID=SEQF2064.1|JH590846.1_1_REPEAT1;Parent=SEQF2064.1|JH590846.1_1;Note=GTTTCAGATCTATCTTAAGTTACATTACTCTCAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590846.1	CCTyper	binding_site	167803	167831	29	+	.	ID=SEQF2064.1|JH590846.1_1_SPACER1;Parent=SEQF2064.1|JH590846.1_1;Note=CAATAACAGGTCTTCCCATTTTCTTTTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590846.1	CCTyper	direct_repeat	167832	167867	36	+	.	ID=SEQF2064.1|JH590846.1_1_REPEAT2;Parent=SEQF2064.1|JH590846.1_1;Note=GTTTCAGATCTATCTTAAGTTACATTACTCTCAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590846.1	CCTyper	binding_site	167868	167897	30	+	.	ID=SEQF2064.1|JH590846.1_1_SPACER2;Parent=SEQF2064.1|JH590846.1_1;Note=AACGTTAACAGTCGGAACAACATACTCCGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590846.1	CCTyper	direct_repeat	167898	167933	36	+	.	ID=SEQF2064.1|JH590846.1_1_REPEAT3;Parent=SEQF2064.1|JH590846.1_1;Note=GTTTCAGATCTATCTTAAGTTACATTACTCTCAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590846.1	CCTyper	binding_site	167934	167963	30	+	.	ID=SEQF2064.1|JH590846.1_1_SPACER3;Parent=SEQF2064.1|JH590846.1_1;Note=TAGTTTCCAGATTCATCAAAAGTTCTTCTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590846.1	CCTyper	direct_repeat	167964	167999	36	+	.	ID=SEQF2064.1|JH590846.1_1_REPEAT4;Parent=SEQF2064.1|JH590846.1_1;Note=GTTTCAGATCTATCTTAAGTTACATTACTCTCAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590846.1	CCTyper	binding_site	168000	168029	30	+	.	ID=SEQF2064.1|JH590846.1_1_SPACER4;Parent=SEQF2064.1|JH590846.1_1;Note=TGTTGCCTAGCAGTTGTATAGCCTATATCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590846.1	CCTyper	direct_repeat	168030	168065	36	+	.	ID=SEQF2064.1|JH590846.1_1_REPEAT5;Parent=SEQF2064.1|JH590846.1_1;Note=GTTTCAGATCTATCTTAAGTTACATTACTCTCAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590846.1	CCTyper	binding_site	168066	168095	30	+	.	ID=SEQF2064.1|JH590846.1_1_SPACER5;Parent=SEQF2064.1|JH590846.1_1;Note=AAATGGAACATCTTGATATCCTTGCCCATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590846.1	CCTyper	direct_repeat	168096	168131	36	+	.	ID=SEQF2064.1|JH590846.1_1_REPEAT6;Parent=SEQF2064.1|JH590846.1_1;Note=GTTTCAGATCTATCTTAAGTTACATTACTCTCAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590846.1	CCTyper	binding_site	168132	168160	29	+	.	ID=SEQF2064.1|JH590846.1_1_SPACER6;Parent=SEQF2064.1|JH590846.1_1;Note=TGAAAAAAATTACAGTTTCCTAAATTTTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590846.1	CCTyper	direct_repeat	168161	168196	36	+	.	ID=SEQF2064.1|JH590846.1_1_REPEAT7;Parent=SEQF2064.1|JH590846.1_1;Note=GTTTCAGATCTATCTTAAGTTACATTACTCTCAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590846.1	CCTyper	binding_site	168197	168226	30	+	.	ID=SEQF2064.1|JH590846.1_1_SPACER7;Parent=SEQF2064.1|JH590846.1_1;Note=ACTATGCTTTTTATAGCTACAATAGTTTTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590846.1	CCTyper	direct_repeat	168227	168262	36	+	.	ID=SEQF2064.1|JH590846.1_1_REPEAT8;Parent=SEQF2064.1|JH590846.1_1;Note=GTTTCAGATCTATCTTAAGTTACATTACTCTCAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590846.1	CCTyper	binding_site	168263	168292	30	+	.	ID=SEQF2064.1|JH590846.1_1_SPACER8;Parent=SEQF2064.1|JH590846.1_1;Note=CCCTTTATAGTTTAGAATTTGGAAGCCCTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590846.1	CCTyper	direct_repeat	168293	168328	36	+	.	ID=SEQF2064.1|JH590846.1_1_REPEAT9;Parent=SEQF2064.1|JH590846.1_1;Note=GTTTCAGATCTATCTTAAGTTACATTACTCTCAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590846.1	CCTyper	binding_site	168329	168358	30	+	.	ID=SEQF2064.1|JH590846.1_1_SPACER9;Parent=SEQF2064.1|JH590846.1_1;Note=AAACTTGGCGTTGGCAAAGCTGACGTAAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590846.1	CCTyper	direct_repeat	168359	168394	36	+	.	ID=SEQF2064.1|JH590846.1_1_REPEAT10;Parent=SEQF2064.1|JH590846.1_1;Note=GTTTCAGATCTATCTTAAGTTACATTACTCTCAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590846.1	CCTyper	binding_site	168395	168424	30	+	.	ID=SEQF2064.1|JH590846.1_1_SPACER10;Parent=SEQF2064.1|JH590846.1_1;Note=TATACCTTTCCTGATATCCAAACACCTCTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590846.1	CCTyper	direct_repeat	168425	168460	36	+	.	ID=SEQF2064.1|JH590846.1_1_REPEAT11;Parent=SEQF2064.1|JH590846.1_1;Note=GTTTCAGATCTATCTTAAGTTACATTACTCTCAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590846.1	CCTyper	binding_site	168461	168490	30	+	.	ID=SEQF2064.1|JH590846.1_1_SPACER11;Parent=SEQF2064.1|JH590846.1_1;Note=CTCTTAGGGCTTCTAAGACATTTTGATATG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590846.1	CCTyper	direct_repeat	168491	168526	36	+	.	ID=SEQF2064.1|JH590846.1_1_REPEAT12;Parent=SEQF2064.1|JH590846.1_1;Note=GTTTCAGATCTATCTTAAGTTACATTACTCTCAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590846.1	CCTyper	binding_site	168527	168556	30	+	.	ID=SEQF2064.1|JH590846.1_1_SPACER12;Parent=SEQF2064.1|JH590846.1_1;Note=TTGGAGAAGCGAAACAAGGATTGGCAACTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590846.1	CCTyper	direct_repeat	168557	168592	36	+	.	ID=SEQF2064.1|JH590846.1_1_REPEAT13;Parent=SEQF2064.1|JH590846.1_1;Note=GTTTCAGATCTATCTTAAGTTACATTACTCTCAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590846.1	CCTyper	binding_site	168593	168622	30	+	.	ID=SEQF2064.1|JH590846.1_1_SPACER13;Parent=SEQF2064.1|JH590846.1_1;Note=CATTTATACATCTACCCACTGCTCATCTTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590846.1	CCTyper	direct_repeat	168623	168658	36	+	.	ID=SEQF2064.1|JH590846.1_1_REPEAT14;Parent=SEQF2064.1|JH590846.1_1;Note=GTTTCAGATCTATCTTAAGTTACATTACTCTCAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590847.1	CCTyper	repeat_region	568788	569416	629	+	.	ID=SEQF2064.1|JH590847.1_2;Genome_ID=SEQF2064.1;Note=Predictor:CCtyper;Start:568788;End:569416;Consensus_Repeat:GTTAAAATTCCAATCTACTTGGATTTAGTC;Number_of_Repeats:10;Repeat_Length:30;Average_Spacer_Length:36.6;Repeat_Identity:97.5;Spacer_Identity:39.9;Spacer_Length_Sem:0.3;Trusted:True;Cas_Type_Prediction: VI-C;Cas_Subtype_Prediction:VI-C;Subtype_Probability:0.99;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590847.1	CCTyper	direct_repeat	568788	568817	30	+	.	ID=SEQF2064.1|JH590847.1_2_REPEAT1;Parent=SEQF2064.1|JH590847.1_2;Note=TATTAAATTCCAATCTACTTGGATTTAGTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590847.1	CCTyper	binding_site	568818	568854	37	+	.	ID=SEQF2064.1|JH590847.1_2_SPACER1;Parent=SEQF2064.1|JH590847.1_2;Note=TTTCTGCGAATGAAGAAACAGAAGATGCAAGCGTGGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590847.1	CCTyper	direct_repeat	568855	568884	30	+	.	ID=SEQF2064.1|JH590847.1_2_REPEAT2;Parent=SEQF2064.1|JH590847.1_2;Note=GTTAAAATTCCAATCTACTTGGATTTAGTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590847.1	CCTyper	binding_site	568885	568920	36	+	.	ID=SEQF2064.1|JH590847.1_2_SPACER2;Parent=SEQF2064.1|JH590847.1_2;Note=GTGAGCAAGCTATGTTTCTCACACTCACAGTTGATG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590847.1	CCTyper	direct_repeat	568921	568950	30	+	.	ID=SEQF2064.1|JH590847.1_2_REPEAT3;Parent=SEQF2064.1|JH590847.1_2;Note=GTTAAAATTCCAATCTACTTGGATTTAGTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590847.1	CCTyper	binding_site	568951	568986	36	+	.	ID=SEQF2064.1|JH590847.1_2_SPACER3;Parent=SEQF2064.1|JH590847.1_2;Note=TAGTTTTTTGTCCCAAATAGGCTTCTTTGGAAGCAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590847.1	CCTyper	direct_repeat	568987	569016	30	+	.	ID=SEQF2064.1|JH590847.1_2_REPEAT4;Parent=SEQF2064.1|JH590847.1_2;Note=GTTAAAATTCCAATCTACTTGGATTTAGTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590847.1	CCTyper	binding_site	569017	569054	38	+	.	ID=SEQF2064.1|JH590847.1_2_SPACER4;Parent=SEQF2064.1|JH590847.1_2;Note=GATAGCATGAAGAGAAGTCCATTGTTGCTAGAACCATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590847.1	CCTyper	direct_repeat	569055	569084	30	+	.	ID=SEQF2064.1|JH590847.1_2_REPEAT5;Parent=SEQF2064.1|JH590847.1_2;Note=GTTAAAATTCCAATCTACTTGGATTTAGTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590847.1	CCTyper	binding_site	569085	569121	37	+	.	ID=SEQF2064.1|JH590847.1_2_SPACER5;Parent=SEQF2064.1|JH590847.1_2;Note=TGGGTCGTGTTGCGTGGATGAGAGGTGGTCGGCGTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590847.1	CCTyper	direct_repeat	569122	569151	30	+	.	ID=SEQF2064.1|JH590847.1_2_REPEAT6;Parent=SEQF2064.1|JH590847.1_2;Note=GTTAAAATTCCAATCTACTTGGATTTAGTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590847.1	CCTyper	binding_site	569152	569188	37	+	.	ID=SEQF2064.1|JH590847.1_2_SPACER6;Parent=SEQF2064.1|JH590847.1_2;Note=CTAACCCATAGTTCCTTTTCGGAACATGGGATATTTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590847.1	CCTyper	direct_repeat	569189	569218	30	+	.	ID=SEQF2064.1|JH590847.1_2_REPEAT7;Parent=SEQF2064.1|JH590847.1_2;Note=GTTAAAATTCCAATCTACTTGGATTTAGTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590847.1	CCTyper	binding_site	569219	569253	35	+	.	ID=SEQF2064.1|JH590847.1_2_SPACER7;Parent=SEQF2064.1|JH590847.1_2;Note=AAGTGAGGATTTTTTATAAAACCCTCGTGTTAGTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590847.1	CCTyper	direct_repeat	569254	569283	30	+	.	ID=SEQF2064.1|JH590847.1_2_REPEAT8;Parent=SEQF2064.1|JH590847.1_2;Note=GTTAAAATTCCAATCTACTTGGATTTAGTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590847.1	CCTyper	binding_site	569284	569319	36	+	.	ID=SEQF2064.1|JH590847.1_2_SPACER8;Parent=SEQF2064.1|JH590847.1_2;Note=TTAATCAAGAACTACAAAATAAAGGGGGAATACACA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590847.1	CCTyper	direct_repeat	569320	569349	30	+	.	ID=SEQF2064.1|JH590847.1_2_REPEAT9;Parent=SEQF2064.1|JH590847.1_2;Note=GTTAAAATTCCAATCTACTTGGATTTAGTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590847.1	CCTyper	binding_site	569350	569386	37	+	.	ID=SEQF2064.1|JH590847.1_2_SPACER9;Parent=SEQF2064.1|JH590847.1_2;Note=GGAGAGTGAACGGTGAATATACGTTCACTCCTATTGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590847.1	CCTyper	direct_repeat	569387	569416	30	+	.	ID=SEQF2064.1|JH590847.1_2_REPEAT10;Parent=SEQF2064.1|JH590847.1_2;Note=GTTAAAATTCCAATCTACTTGGATTTAGTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2064.1|JH590846.1	CCTyper	OPERON	168817	174599	5783	-	.	ID=SEQF2064.1|JH590846.1@5;Genome_ID=SEQF2064.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Csn2_0_CAS-II-A,Cas2_5_CAS-I-II-III-IV-V-VI,Cas1_4_CAS-I-II-III-IV-V-VI,Cas1_4_CAS-I-II-III-IV-V-VI,Cas9_0_II,Cas9_0_II,Cas9_0_II,Cas9_0_II;Positions=229,230,231,232,234,235,236,237;E-values=4.40e-46,2.80e-19,9.30e-57,1.00e-32,6.20e-34,5.20e-88,3.10e-27,8.80e-47;CoverageSeq=0.99,0.785,0.881,0.957,0.89,0.985,0.642,0.93;CoverageHMM=0.87,0.543,0.582,0.407,0.14,0.47,0.171,0.205;Strand_Interference=-1;Strand_Adaptation=-1
SEQF2064.1|JH590846.1	CCTyper	CDS	169715	170242	176	-	.	ID=SEQF2064.1|JH590846.1_231_cas;Genome_ID=SEQF2064.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=9.300000000000001e-57;Score=189.8;Coverage_Seq=0.8806818181818182;Coverage_Hmm=0.5818181818181818
SEQF2064.1|JH590846.1	CCTyper	CDS	170239	170586	116	-	.	ID=SEQF2064.1|JH590846.1_232_cas;Genome_ID=SEQF2064.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=9.999999999999999e-33;Score=111.0;Coverage_Seq=0.9568965517241379;Coverage_Hmm=0.4072727272727273
SEQF2064.1|JH590846.1	CCTyper	CDS	169489	169725	79	-	.	ID=SEQF2064.1|JH590846.1_230_cas;Genome_ID=SEQF2064.1;Feature_type=CDS;Product=Cas Prediction : Cas2_5_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=2.8e-19;Score=67.0;Coverage_Seq=0.7848101265822784;Coverage_Hmm=0.5431034482758621
SEQF2064.1|JH590846.1	CCTyper	CDS	171550	171903	118	-	.	ID=SEQF2064.1|JH590846.1_234_cas;Genome_ID=SEQF2064.1;Feature_type=CDS;Product=Cas Prediction : Cas9_0_II;coding_strand=-;E-value=6.2000000000000004e-34;Score=115.0;Coverage_Seq=0.8898305084745762;Coverage_Hmm=0.13975903614457832
SEQF2064.1|JH590846.1	CCTyper	CDS	171900	173063	388	-	.	ID=SEQF2064.1|JH590846.1_235_cas;Genome_ID=SEQF2064.1;Feature_type=CDS;Product=Cas Prediction : Cas9_0_II;coding_strand=-;E-value=5.2e-88;Score=293.9;Coverage_Seq=0.9845360824742269;Coverage_Hmm=0.46987951807228917
SEQF2064.1|JH590846.1	CCTyper	CDS	173032	174021	330	-	.	ID=SEQF2064.1|JH590846.1_236_cas;Genome_ID=SEQF2064.1;Feature_type=CDS;Product=Cas Prediction : Cas9_0_II;coding_strand=-;E-value=3.1000000000000002e-27;Score=92.8;Coverage_Seq=0.6424242424242425;Coverage_Hmm=0.1710843373493976
SEQF2064.1|JH590846.1	CCTyper	CDS	174003	174599	199	-	.	ID=SEQF2064.1|JH590846.1_237_cas;Genome_ID=SEQF2064.1;Feature_type=CDS;Product=Cas Prediction : Cas9_0_II;coding_strand=-;E-value=8.799999999999999e-47;Score=157.5;Coverage_Seq=0.9296482412060302;Coverage_Hmm=0.20481927710843373
SEQF2064.1|JH590846.1	CCTyper	CDS	168817	169407	197	-	.	ID=SEQF2064.1|JH590846.1_229_cas;Genome_ID=SEQF2064.1;Feature_type=CDS;Product=Cas Prediction : Csn2_0_CAS-II-A;coding_strand=-;E-value=4.4e-46;Score=154.7;Coverage_Seq=0.9898477157360406;Coverage_Hmm=0.8699551569506726