SEQF2117.1|JH379513.1	CCTyper	repeat_region	297094	299010	1917	+	.	ID=SEQF2117.1|JH379513.1_1;Genome_ID=SEQF2117.1;Note=Predictor:CCtyper;Start:297094;End:299010;Consensus_Repeat:GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Number_of_Repeats:29;Repeat_Length:36;Average_Spacer_Length:31.2;Repeat_Identity:86.5;Spacer_Identity:39.8;Spacer_Length_Sem:0.6;Trusted:True;Cas_Type_Prediction: II-A;Cas_Subtype_Prediction:II-A;Subtype_Probability:0.992;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	direct_repeat	297094	297129	36	+	.	ID=SEQF2117.1|JH379513.1_1_REPEAT1;Parent=SEQF2117.1|JH379513.1_1;Note=TCACTGAAGGTTTTTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	binding_site	297130	297159	30	+	.	ID=SEQF2117.1|JH379513.1_1_SPACER1;Parent=SEQF2117.1|JH379513.1_1;Note=TGCCGCGTCGATCTTTGTCAATACCCGAGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	direct_repeat	297160	297195	36	+	.	ID=SEQF2117.1|JH379513.1_1_REPEAT2;Parent=SEQF2117.1|JH379513.1_1;Note=GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	binding_site	297196	297227	32	+	.	ID=SEQF2117.1|JH379513.1_1_SPACER2;Parent=SEQF2117.1|JH379513.1_1;Note=CTTTTTTTCGGCTTGATTGATATGTTGNNNNN;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	direct_repeat	297228	297263	36	+	.	ID=SEQF2117.1|JH379513.1_1_REPEAT3;Parent=SEQF2117.1|JH379513.1_1;Note=NNNNNTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	binding_site	297264	297293	30	+	.	ID=SEQF2117.1|JH379513.1_1_SPACER3;Parent=SEQF2117.1|JH379513.1_1;Note=TGCGCGTCGTTTTGATTTTGAAGATGCCGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	direct_repeat	297294	297329	36	+	.	ID=SEQF2117.1|JH379513.1_1_REPEAT4;Parent=SEQF2117.1|JH379513.1_1;Note=GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	binding_site	297330	297359	30	+	.	ID=SEQF2117.1|JH379513.1_1_SPACER4;Parent=SEQF2117.1|JH379513.1_1;Note=CAACGGCCAGCGACAGCGCAACGCGTCAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	direct_repeat	297360	297395	36	+	.	ID=SEQF2117.1|JH379513.1_1_REPEAT5;Parent=SEQF2117.1|JH379513.1_1;Note=GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	binding_site	297396	297425	30	+	.	ID=SEQF2117.1|JH379513.1_1_SPACER5;Parent=SEQF2117.1|JH379513.1_1;Note=CAAGCGGTGGGCAAACTCACTTCGTCATCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	direct_repeat	297426	297461	36	+	.	ID=SEQF2117.1|JH379513.1_1_REPEAT6;Parent=SEQF2117.1|JH379513.1_1;Note=GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	binding_site	297462	297491	30	+	.	ID=SEQF2117.1|JH379513.1_1_SPACER6;Parent=SEQF2117.1|JH379513.1_1;Note=TATTTGGGAAAATACAAGCCCATCATAAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	direct_repeat	297492	297527	36	+	.	ID=SEQF2117.1|JH379513.1_1_REPEAT7;Parent=SEQF2117.1|JH379513.1_1;Note=GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	binding_site	297528	297557	30	+	.	ID=SEQF2117.1|JH379513.1_1_SPACER7;Parent=SEQF2117.1|JH379513.1_1;Note=TGATTCAATTGACTATTGCGGGCTTCCAGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	direct_repeat	297558	297593	36	+	.	ID=SEQF2117.1|JH379513.1_1_REPEAT8;Parent=SEQF2117.1|JH379513.1_1;Note=GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	binding_site	297594	297623	30	+	.	ID=SEQF2117.1|JH379513.1_1_SPACER8;Parent=SEQF2117.1|JH379513.1_1;Note=CTCGGCGCCGTTGATGGTCAATGTCAGCGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	direct_repeat	297624	297659	36	+	.	ID=SEQF2117.1|JH379513.1_1_REPEAT9;Parent=SEQF2117.1|JH379513.1_1;Note=GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	binding_site	297660	297689	30	+	.	ID=SEQF2117.1|JH379513.1_1_SPACER9;Parent=SEQF2117.1|JH379513.1_1;Note=CGTGGCATCGGTCACGGCTTTAAAATTGCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	direct_repeat	297690	297725	36	+	.	ID=SEQF2117.1|JH379513.1_1_REPEAT10;Parent=SEQF2117.1|JH379513.1_1;Note=GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	binding_site	297726	297755	30	+	.	ID=SEQF2117.1|JH379513.1_1_SPACER10;Parent=SEQF2117.1|JH379513.1_1;Note=TTCGGTAAGCCACACAAGCGACTAACACGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	direct_repeat	297756	297791	36	+	.	ID=SEQF2117.1|JH379513.1_1_REPEAT11;Parent=SEQF2117.1|JH379513.1_1;Note=GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	binding_site	297792	297825	34	+	.	ID=SEQF2117.1|JH379513.1_1_SPACER11;Parent=SEQF2117.1|JH379513.1_1;Note=TTCGTGCAAAGGTTTCGCCAACTGCGTCNNNNNN;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	direct_repeat	297826	297861	36	+	.	ID=SEQF2117.1|JH379513.1_1_REPEAT12;Parent=SEQF2117.1|JH379513.1_1;Note=NNNNTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	binding_site	297862	297891	30	+	.	ID=SEQF2117.1|JH379513.1_1_SPACER12;Parent=SEQF2117.1|JH379513.1_1;Note=AATGGCGGGATAAGGGTATTCAAACCATTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	direct_repeat	297892	297927	36	+	.	ID=SEQF2117.1|JH379513.1_1_REPEAT13;Parent=SEQF2117.1|JH379513.1_1;Note=GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	binding_site	297928	297959	32	+	.	ID=SEQF2117.1|JH379513.1_1_SPACER13;Parent=SEQF2117.1|JH379513.1_1;Note=CGAAAGTCGTGTATATGTAGCCGGCACCCTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	direct_repeat	297960	297995	36	+	.	ID=SEQF2117.1|JH379513.1_1_REPEAT14;Parent=SEQF2117.1|JH379513.1_1;Note=GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	binding_site	297996	298025	30	+	.	ID=SEQF2117.1|JH379513.1_1_SPACER14;Parent=SEQF2117.1|JH379513.1_1;Note=TGACCAACCGGAGAGCGTTAAGCGTCATTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	direct_repeat	298026	298061	36	+	.	ID=SEQF2117.1|JH379513.1_1_REPEAT15;Parent=SEQF2117.1|JH379513.1_1;Note=GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	binding_site	298062	298091	30	+	.	ID=SEQF2117.1|JH379513.1_1_SPACER15;Parent=SEQF2117.1|JH379513.1_1;Note=CGTAATCGGTTCGTTTTGCAACCAAAACGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	direct_repeat	298092	298127	36	+	.	ID=SEQF2117.1|JH379513.1_1_REPEAT16;Parent=SEQF2117.1|JH379513.1_1;Note=GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	binding_site	298128	298161	34	+	.	ID=SEQF2117.1|JH379513.1_1_SPACER16;Parent=SEQF2117.1|JH379513.1_1;Note=GCGCGTATGCATATCACGACAAGTCACGANNNNN;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	direct_repeat	298162	298197	36	+	.	ID=SEQF2117.1|JH379513.1_1_REPEAT17;Parent=SEQF2117.1|JH379513.1_1;Note=NNNNNTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	binding_site	298198	298227	30	+	.	ID=SEQF2117.1|JH379513.1_1_SPACER17;Parent=SEQF2117.1|JH379513.1_1;Note=TGAAATGAGTGGTCAACTTAAAGAACTTTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	direct_repeat	298228	298263	36	+	.	ID=SEQF2117.1|JH379513.1_1_REPEAT18;Parent=SEQF2117.1|JH379513.1_1;Note=GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	binding_site	298264	298293	30	+	.	ID=SEQF2117.1|JH379513.1_1_SPACER18;Parent=SEQF2117.1|JH379513.1_1;Note=TTATAAATCAGTCGCCGCCTGCATATTAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	direct_repeat	298294	298329	36	+	.	ID=SEQF2117.1|JH379513.1_1_REPEAT19;Parent=SEQF2117.1|JH379513.1_1;Note=GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	binding_site	298330	298359	30	+	.	ID=SEQF2117.1|JH379513.1_1_SPACER19;Parent=SEQF2117.1|JH379513.1_1;Note=CACGTGGGAGTCAGCTAAGCAGTACACCTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	direct_repeat	298360	298395	36	+	.	ID=SEQF2117.1|JH379513.1_1_REPEAT20;Parent=SEQF2117.1|JH379513.1_1;Note=GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	binding_site	298396	298425	30	+	.	ID=SEQF2117.1|JH379513.1_1_SPACER20;Parent=SEQF2117.1|JH379513.1_1;Note=TTAAGACTGATGTTGACGGAGTCTGTTGTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	direct_repeat	298426	298461	36	+	.	ID=SEQF2117.1|JH379513.1_1_REPEAT21;Parent=SEQF2117.1|JH379513.1_1;Note=GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	binding_site	298462	298494	33	+	.	ID=SEQF2117.1|JH379513.1_1_SPACER21;Parent=SEQF2117.1|JH379513.1_1;Note=CAGGAATGTACATCCGCGCCTCAATCANNNNNN;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	direct_repeat	298495	298530	36	+	.	ID=SEQF2117.1|JH379513.1_1_REPEAT22;Parent=SEQF2117.1|JH379513.1_1;Note=NNNNTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	binding_site	298531	298560	30	+	.	ID=SEQF2117.1|JH379513.1_1_SPACER22;Parent=SEQF2117.1|JH379513.1_1;Note=ACGTTGTTACGATTCGCATACGATGTTTAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	direct_repeat	298561	298596	36	+	.	ID=SEQF2117.1|JH379513.1_1_REPEAT23;Parent=SEQF2117.1|JH379513.1_1;Note=GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	binding_site	298597	298626	30	+	.	ID=SEQF2117.1|JH379513.1_1_SPACER23;Parent=SEQF2117.1|JH379513.1_1;Note=TTATAAATCAGTCGCCGCCTGCATATTAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	direct_repeat	298627	298662	36	+	.	ID=SEQF2117.1|JH379513.1_1_REPEAT24;Parent=SEQF2117.1|JH379513.1_1;Note=GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	binding_site	298663	298695	33	+	.	ID=SEQF2117.1|JH379513.1_1_SPACER24;Parent=SEQF2117.1|JH379513.1_1;Note=GCCATTCTGTGTATAGCGTGTTAGATAGNNNNN;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	direct_repeat	298696	298731	36	+	.	ID=SEQF2117.1|JH379513.1_1_REPEAT25;Parent=SEQF2117.1|JH379513.1_1;Note=NNNNNTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	binding_site	298732	298761	30	+	.	ID=SEQF2117.1|JH379513.1_1_SPACER25;Parent=SEQF2117.1|JH379513.1_1;Note=TGACTTCTTATCGCGACATCTCGCAAATCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	direct_repeat	298762	298797	36	+	.	ID=SEQF2117.1|JH379513.1_1_REPEAT26;Parent=SEQF2117.1|JH379513.1_1;Note=GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	binding_site	298798	298827	30	+	.	ID=SEQF2117.1|JH379513.1_1_SPACER26;Parent=SEQF2117.1|JH379513.1_1;Note=TTATAAATCAGTCGCCGCCTGCATATTAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	direct_repeat	298828	298863	36	+	.	ID=SEQF2117.1|JH379513.1_1_REPEAT27;Parent=SEQF2117.1|JH379513.1_1;Note=GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	binding_site	298864	298908	45	+	.	ID=SEQF2117.1|JH379513.1_1_SPACER27;Parent=SEQF2117.1|JH379513.1_1;Note=CCAAACTACTGTCTTATAATCGTATTCNNNNNNNNNNNNNNNNNN;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	direct_repeat	298909	298944	36	+	.	ID=SEQF2117.1|JH379513.1_1_REPEAT28;Parent=SEQF2117.1|JH379513.1_1;Note=NNNNTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	binding_site	298945	298974	30	+	.	ID=SEQF2117.1|JH379513.1_1_SPACER28;Parent=SEQF2117.1|JH379513.1_1;Note=ACCCTTATGGTTGTATTTGGCTACCTTACT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	direct_repeat	298975	299010	36	+	.	ID=SEQF2117.1|JH379513.1_1_REPEAT29;Parent=SEQF2117.1|JH379513.1_1;Note=GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2117.1|JH379513.1	CCTyper	OPERON	299031	305173	6143	-	.	ID=SEQF2117.1|JH379513.1@7;Genome_ID=SEQF2117.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Csn2_3_CAS-II-A,Cas2_9_CAS-I-II-III-IV-V-VI,Cas1_4_CAS-I-II-III-IV-V-VI,Cas9_0_II;Positions=259,260,261,262;E-values=7.20e-63,1.40e-53,4.00e-79,2.40e-164;CoverageSeq=0.965,0.99,0.807,0.811;CoverageHMM=0.995,1.0,0.996,0.977;Strand_Interference=-1;Strand_Adaptation=-1
SEQF2117.1|JH379513.1	CCTyper	CDS	299991	300986	332	-	.	ID=SEQF2117.1|JH379513.1_261_cas;Genome_ID=SEQF2117.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=4e-79;Score=262.9;Coverage_Seq=0.8072289156626506;Coverage_Hmm=0.9963636363636363
SEQF2117.1|JH379513.1	CCTyper	CDS	299708	300013	102	-	.	ID=SEQF2117.1|JH379513.1_260_cas;Genome_ID=SEQF2117.1;Feature_type=CDS;Product=Cas Prediction : Cas2_9_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.4e-53;Score=176.6;Coverage_Seq=0.9901960784313726;Coverage_Hmm=1.0
SEQF2117.1|JH379513.1	CCTyper	CDS	301088	305173	1362	-	.	ID=SEQF2117.1|JH379513.1_262_cas;Genome_ID=SEQF2117.1;Feature_type=CDS;Product=Cas Prediction : Cas9_0_II;coding_strand=-;E-value=2.4000000000000002e-164;Score=546.1;Coverage_Seq=0.8105726872246696;Coverage_Hmm=0.9771084337349397
SEQF2117.1|JH379513.1	CCTyper	CDS	299031	299711	227	-	.	ID=SEQF2117.1|JH379513.1_259_cas;Genome_ID=SEQF2117.1;Feature_type=CDS;Product=Cas Prediction : Csn2_3_CAS-II-A;coding_strand=-;E-value=7.2e-63;Score=209.5;Coverage_Seq=0.9647577092511013;Coverage_Hmm=0.9954337899543378