SEQF2400.1|ALIF01000001.1	CCTyper	repeat_region	1126465	1127804	1340	+	.	ID=SEQF2400.1|ALIF01000001.1_1;Genome_ID=SEQF2400.1;Note=Predictor:CCtyper;Start:1126465;End:1127804;Consensus_Repeat:GTTTCCGTCCCCTCTCGAGGTATATAGGTTTATATC;Number_of_Repeats:19;Repeat_Length:36;Average_Spacer_Length:36.4;Repeat_Identity:86.2;Spacer_Identity:42.2;Spacer_Length_Sem:0.3;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.977;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	direct_repeat	1126465	1126500	36	+	.	ID=SEQF2400.1|ALIF01000001.1_1_REPEAT1;Parent=SEQF2400.1|ALIF01000001.1_1;Note=TTTTCCGTCCCCTTGCAAGGTGAATAGGTGTATTTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	binding_site	1126501	1126536	36	+	.	ID=SEQF2400.1|ALIF01000001.1_1_SPACER1;Parent=SEQF2400.1|ALIF01000001.1_1;Note=AGTCTTCGAGTGGATTTTAGAGCAATCTGGGCTATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	direct_repeat	1126537	1126572	36	+	.	ID=SEQF2400.1|ALIF01000001.1_1_REPEAT2;Parent=SEQF2400.1|ALIF01000001.1_1;Note=GTTTCCGTCCCCTCTCGAGGTGAATAGGGTTATATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	binding_site	1126573	1126609	37	+	.	ID=SEQF2400.1|ALIF01000001.1_1_SPACER2;Parent=SEQF2400.1|ALIF01000001.1_1;Note=ACTCTTAGCAGAAAAGCCCGATCAGGCAAAAAAATAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	direct_repeat	1126610	1126645	36	+	.	ID=SEQF2400.1|ALIF01000001.1_1_REPEAT3;Parent=SEQF2400.1|ALIF01000001.1_1;Note=GTTCCCGTCCCCTCTCGAGGTTGGTAGGTTTATATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	binding_site	1126646	1126680	35	+	.	ID=SEQF2400.1|ALIF01000001.1_1_SPACER3;Parent=SEQF2400.1|ALIF01000001.1_1;Note=GGTAACTTGGGAACAACGGTTACAATGAACAGACA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	direct_repeat	1126681	1126716	36	+	.	ID=SEQF2400.1|ALIF01000001.1_1_REPEAT4;Parent=SEQF2400.1|ALIF01000001.1_1;Note=GTTTCCGTCCCCTCTCGAGGTGAATAGGTTTATATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	binding_site	1126717	1126752	36	+	.	ID=SEQF2400.1|ALIF01000001.1_1_SPACER4;Parent=SEQF2400.1|ALIF01000001.1_1;Note=CTAATCAAGAACGCTATGAGGAAGATTTAAAAATCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	direct_repeat	1126753	1126788	36	+	.	ID=SEQF2400.1|ALIF01000001.1_1_REPEAT5;Parent=SEQF2400.1|ALIF01000001.1_1;Note=GTTTCCGTCCCCTCGCGAGGTAAATAGGTTTATATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	binding_site	1126789	1126826	38	+	.	ID=SEQF2400.1|ALIF01000001.1_1_SPACER5;Parent=SEQF2400.1|ALIF01000001.1_1;Note=TTAAGTGAACTTAAAGAACTAGTTAACAGTAATATGCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	direct_repeat	1126827	1126862	36	+	.	ID=SEQF2400.1|ALIF01000001.1_1_REPEAT6;Parent=SEQF2400.1|ALIF01000001.1_1;Note=GTTACCGTCCTCTCCCGAGGTGGATAGGTTTATATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	binding_site	1126863	1126901	39	+	.	ID=SEQF2400.1|ALIF01000001.1_1_SPACER6;Parent=SEQF2400.1|ALIF01000001.1_1;Note=CGCTCTCTATGGAAAGACTGCTCAGTCAGCGTCGCTTGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	direct_repeat	1126902	1126937	36	+	.	ID=SEQF2400.1|ALIF01000001.1_1_REPEAT7;Parent=SEQF2400.1|ALIF01000001.1_1;Note=GTTTCCGTCCCCTCTCGAGGTAGATAGGTTTATATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	binding_site	1126938	1126973	36	+	.	ID=SEQF2400.1|ALIF01000001.1_1_SPACER7;Parent=SEQF2400.1|ALIF01000001.1_1;Note=CGGTGATGTTGGTTTAACCTTTTATCAAAATAATCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	direct_repeat	1126974	1127009	36	+	.	ID=SEQF2400.1|ALIF01000001.1_1_REPEAT8;Parent=SEQF2400.1|ALIF01000001.1_1;Note=GTTTCCGTCCCCTCTCAAGGTAGATAGGTTTATATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	binding_site	1127010	1127046	37	+	.	ID=SEQF2400.1|ALIF01000001.1_1_SPACER8;Parent=SEQF2400.1|ALIF01000001.1_1;Note=TGTCGAAAAGAATGACGTAGAAACTCAAGAAGAAGAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	direct_repeat	1127047	1127082	36	+	.	ID=SEQF2400.1|ALIF01000001.1_1_REPEAT9;Parent=SEQF2400.1|ALIF01000001.1_1;Note=GTTACCGTCCCCTCTCGAGGTGAATAGGTTTATATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	binding_site	1127083	1127118	36	+	.	ID=SEQF2400.1|ALIF01000001.1_1_SPACER9;Parent=SEQF2400.1|ALIF01000001.1_1;Note=AAATCTTATGAATAATGTCGTTTTGTCTGGTCGTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	direct_repeat	1127119	1127154	36	+	.	ID=SEQF2400.1|ALIF01000001.1_1_REPEAT10;Parent=SEQF2400.1|ALIF01000001.1_1;Note=GTTTCCGTCCCCTCGCGAGGTAGATAGGTTTATATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	binding_site	1127155	1127189	35	+	.	ID=SEQF2400.1|ALIF01000001.1_1_SPACER10;Parent=SEQF2400.1|ALIF01000001.1_1;Note=AATGACATTTCAAGTTACAAACTTACAGACAAATA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	direct_repeat	1127190	1127225	36	+	.	ID=SEQF2400.1|ALIF01000001.1_1_REPEAT11;Parent=SEQF2400.1|ALIF01000001.1_1;Note=GTTTCCGTCCCCGCTCAGGGTGGATAGGTTTATATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	binding_site	1127226	1127262	37	+	.	ID=SEQF2400.1|ALIF01000001.1_1_SPACER11;Parent=SEQF2400.1|ALIF01000001.1_1;Note=ATGGCAAACAATCAAGGAAAAATCGAATTAGGTCTAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	direct_repeat	1127263	1127298	36	+	.	ID=SEQF2400.1|ALIF01000001.1_1_REPEAT12;Parent=SEQF2400.1|ALIF01000001.1_1;Note=GTTTCCGTCCCCTCGCGAGGTGGATAGATGTATCAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	binding_site	1127299	1127333	35	+	.	ID=SEQF2400.1|ALIF01000001.1_1_SPACER12;Parent=SEQF2400.1|ALIF01000001.1_1;Note=TGCAGGGTAGTAGCAGTTGGGTAGCTCGCCAGGCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	direct_repeat	1127334	1127369	36	+	.	ID=SEQF2400.1|ALIF01000001.1_1_REPEAT13;Parent=SEQF2400.1|ALIF01000001.1_1;Note=GCTTCCTTCCCCTCGCGAGGTAATTAGGTTTATATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	binding_site	1127370	1127406	37	+	.	ID=SEQF2400.1|ALIF01000001.1_1_SPACER13;Parent=SEQF2400.1|ALIF01000001.1_1;Note=TTTACTTGTACTACAAGACTAAGCTTGTAAATGCTGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	direct_repeat	1127407	1127442	36	+	.	ID=SEQF2400.1|ALIF01000001.1_1_REPEAT14;Parent=SEQF2400.1|ALIF01000001.1_1;Note=GTTTCCGTCCCCTCACGAGGTAAATAGGTTTATATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	binding_site	1127443	1127478	36	+	.	ID=SEQF2400.1|ALIF01000001.1_1_SPACER14;Parent=SEQF2400.1|ALIF01000001.1_1;Note=ACGCACAAAAAAGGCTCTTATAAACAGTTTTTCCAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	direct_repeat	1127479	1127514	36	+	.	ID=SEQF2400.1|ALIF01000001.1_1_REPEAT15;Parent=SEQF2400.1|ALIF01000001.1_1;Note=GTTTCCGTCCCCTCTCGAGGTATATAGGTTTATATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	binding_site	1127515	1127548	34	+	.	ID=SEQF2400.1|ALIF01000001.1_1_SPACER15;Parent=SEQF2400.1|ALIF01000001.1_1;Note=GATATGTAAGATAAAGAAAGGGAGCTACAAAGAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	direct_repeat	1127549	1127584	36	+	.	ID=SEQF2400.1|ALIF01000001.1_1_REPEAT16;Parent=SEQF2400.1|ALIF01000001.1_1;Note=GTTTCCGTCCCCTCTCGAGGTAAATAGGGTTATATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	binding_site	1127585	1127622	38	+	.	ID=SEQF2400.1|ALIF01000001.1_1_SPACER16;Parent=SEQF2400.1|ALIF01000001.1_1;Note=GCTGGTAAAGCGTTCGCAGAATTGACAGAAGCACAACA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	direct_repeat	1127623	1127658	36	+	.	ID=SEQF2400.1|ALIF01000001.1_1_REPEAT17;Parent=SEQF2400.1|ALIF01000001.1_1;Note=GTTTCCGTCCCCTCGCGAGGTATATAGGTTTATATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	binding_site	1127659	1127694	36	+	.	ID=SEQF2400.1|ALIF01000001.1_1_SPACER17;Parent=SEQF2400.1|ALIF01000001.1_1;Note=TGAAACTAAGTGATATTCTATATGTTTGCTCTTATG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	direct_repeat	1127695	1127730	36	+	.	ID=SEQF2400.1|ALIF01000001.1_1_REPEAT18;Parent=SEQF2400.1|ALIF01000001.1_1;Note=GTTTCCGTCCCCTCTCGAGGTATATAGGTTTATATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	binding_site	1127731	1127768	38	+	.	ID=SEQF2400.1|ALIF01000001.1_1_SPACER18;Parent=SEQF2400.1|ALIF01000001.1_1;Note=AAATGTGCAAATTTTCCGTAATCTAATTTCAAGTGGCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000001.1	CCTyper	direct_repeat	1127769	1127804	36	+	.	ID=SEQF2400.1|ALIF01000001.1_1_REPEAT19;Parent=SEQF2400.1|ALIF01000001.1_1;Note=GTTTCCGTCCCCTCTCGAGGTATATAGGTTTATATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000006.1	CCTyper	repeat_region	103595	104619	1025	+	.	ID=SEQF2400.1|ALIF01000006.1_2;Genome_ID=SEQF2400.1;Note=Predictor:CCtyper;Start:103595;End:104619;Consensus_Repeat:GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC;Number_of_Repeats:16;Repeat_Length:36;Average_Spacer_Length:29.9;Repeat_Identity:97.9;Spacer_Identity:41.1;Spacer_Length_Sem:0.1;Trusted:True;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:II-A;Subtype_Probability:0.549;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000006.1	CCTyper	direct_repeat	103595	103630	36	+	.	ID=SEQF2400.1|ALIF01000006.1_2_REPEAT1;Parent=SEQF2400.1|ALIF01000006.1_2;Note=GTATTGAAACCATTCGAAACAACACAGCTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000006.1	CCTyper	binding_site	103631	103660	30	+	.	ID=SEQF2400.1|ALIF01000006.1_2_SPACER1;Parent=SEQF2400.1|ALIF01000006.1_2;Note=GTTAATTCTTTAGGTACAGGTGTTAAGTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000006.1	CCTyper	direct_repeat	103661	103696	36	+	.	ID=SEQF2400.1|ALIF01000006.1_2_REPEAT2;Parent=SEQF2400.1|ALIF01000006.1_2;Note=GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000006.1	CCTyper	binding_site	103697	103726	30	+	.	ID=SEQF2400.1|ALIF01000006.1_2_SPACER2;Parent=SEQF2400.1|ALIF01000006.1_2;Note=ATTGATGGCGCTGAATCTGTCGAGATAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000006.1	CCTyper	direct_repeat	103727	103762	36	+	.	ID=SEQF2400.1|ALIF01000006.1_2_REPEAT3;Parent=SEQF2400.1|ALIF01000006.1_2;Note=GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000006.1	CCTyper	binding_site	103763	103792	30	+	.	ID=SEQF2400.1|ALIF01000006.1_2_SPACER3;Parent=SEQF2400.1|ALIF01000006.1_2;Note=TGTATGTGTCTTTGTATCGCTCAAAATATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000006.1	CCTyper	direct_repeat	103793	103828	36	+	.	ID=SEQF2400.1|ALIF01000006.1_2_REPEAT4;Parent=SEQF2400.1|ALIF01000006.1_2;Note=GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000006.1	CCTyper	binding_site	103829	103858	30	+	.	ID=SEQF2400.1|ALIF01000006.1_2_SPACER4;Parent=SEQF2400.1|ALIF01000006.1_2;Note=CCTTGAATAACCTTACGACCATCGAATGGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000006.1	CCTyper	direct_repeat	103859	103894	36	+	.	ID=SEQF2400.1|ALIF01000006.1_2_REPEAT5;Parent=SEQF2400.1|ALIF01000006.1_2;Note=GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000006.1	CCTyper	binding_site	103895	103924	30	+	.	ID=SEQF2400.1|ALIF01000006.1_2_SPACER5;Parent=SEQF2400.1|ALIF01000006.1_2;Note=AGAATTTGGGCAAAACTGGCACCAAGTTAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000006.1	CCTyper	direct_repeat	103925	103960	36	+	.	ID=SEQF2400.1|ALIF01000006.1_2_REPEAT6;Parent=SEQF2400.1|ALIF01000006.1_2;Note=GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000006.1	CCTyper	binding_site	103961	103990	30	+	.	ID=SEQF2400.1|ALIF01000006.1_2_SPACER6;Parent=SEQF2400.1|ALIF01000006.1_2;Note=CAATTCTGTTAGTGGTATCGCTAGCCATTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000006.1	CCTyper	direct_repeat	103991	104026	36	+	.	ID=SEQF2400.1|ALIF01000006.1_2_REPEAT7;Parent=SEQF2400.1|ALIF01000006.1_2;Note=GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000006.1	CCTyper	binding_site	104027	104056	30	+	.	ID=SEQF2400.1|ALIF01000006.1_2_SPACER7;Parent=SEQF2400.1|ALIF01000006.1_2;Note=CTAGCACCATCTACATAGAGAGGATGGTAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000006.1	CCTyper	direct_repeat	104057	104092	36	+	.	ID=SEQF2400.1|ALIF01000006.1_2_REPEAT8;Parent=SEQF2400.1|ALIF01000006.1_2;Note=GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000006.1	CCTyper	binding_site	104093	104122	30	+	.	ID=SEQF2400.1|ALIF01000006.1_2_SPACER8;Parent=SEQF2400.1|ALIF01000006.1_2;Note=CTACCTTGTGCTTGGATAACTTTTTTAATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000006.1	CCTyper	direct_repeat	104123	104158	36	+	.	ID=SEQF2400.1|ALIF01000006.1_2_REPEAT9;Parent=SEQF2400.1|ALIF01000006.1_2;Note=GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000006.1	CCTyper	binding_site	104159	104188	30	+	.	ID=SEQF2400.1|ALIF01000006.1_2_SPACER9;Parent=SEQF2400.1|ALIF01000006.1_2;Note=TTACAACATCAAATAGTTACGCATGGCCCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000006.1	CCTyper	direct_repeat	104189	104224	36	+	.	ID=SEQF2400.1|ALIF01000006.1_2_REPEAT10;Parent=SEQF2400.1|ALIF01000006.1_2;Note=GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000006.1	CCTyper	binding_site	104225	104254	30	+	.	ID=SEQF2400.1|ALIF01000006.1_2_SPACER10;Parent=SEQF2400.1|ALIF01000006.1_2;Note=ATAGCATTCTTAACTTTCTTAAGGGCAGTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000006.1	CCTyper	direct_repeat	104255	104290	36	+	.	ID=SEQF2400.1|ALIF01000006.1_2_REPEAT11;Parent=SEQF2400.1|ALIF01000006.1_2;Note=GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000006.1	CCTyper	binding_site	104291	104320	30	+	.	ID=SEQF2400.1|ALIF01000006.1_2_SPACER11;Parent=SEQF2400.1|ALIF01000006.1_2;Note=GTCAAGGGATTCATCATCAAGACTTCTTCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000006.1	CCTyper	direct_repeat	104321	104356	36	+	.	ID=SEQF2400.1|ALIF01000006.1_2_REPEAT12;Parent=SEQF2400.1|ALIF01000006.1_2;Note=GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000006.1	CCTyper	binding_site	104357	104386	30	+	.	ID=SEQF2400.1|ALIF01000006.1_2_SPACER12;Parent=SEQF2400.1|ALIF01000006.1_2;Note=GGTTGACGGTGTAGATTCTCGAAATCTGCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000006.1	CCTyper	direct_repeat	104387	104422	36	+	.	ID=SEQF2400.1|ALIF01000006.1_2_REPEAT13;Parent=SEQF2400.1|ALIF01000006.1_2;Note=GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000006.1	CCTyper	binding_site	104423	104451	29	+	.	ID=SEQF2400.1|ALIF01000006.1_2_SPACER13;Parent=SEQF2400.1|ALIF01000006.1_2;Note=AGACCTTGTAGCAAGGTAGCTGAGAACGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000006.1	CCTyper	direct_repeat	104452	104487	36	+	.	ID=SEQF2400.1|ALIF01000006.1_2_REPEAT14;Parent=SEQF2400.1|ALIF01000006.1_2;Note=GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000006.1	CCTyper	binding_site	104488	104517	30	+	.	ID=SEQF2400.1|ALIF01000006.1_2_SPACER14;Parent=SEQF2400.1|ALIF01000006.1_2;Note=TCTCTTAGCTTCCTGGTCGTTCTTAGGTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000006.1	CCTyper	direct_repeat	104518	104553	36	+	.	ID=SEQF2400.1|ALIF01000006.1_2_REPEAT15;Parent=SEQF2400.1|ALIF01000006.1_2;Note=GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000006.1	CCTyper	binding_site	104554	104583	30	+	.	ID=SEQF2400.1|ALIF01000006.1_2_SPACER15;Parent=SEQF2400.1|ALIF01000006.1_2;Note=ACAAGAAGTGTATTAAGAGTCTTGTAGTTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000006.1	CCTyper	direct_repeat	104584	104619	36	+	.	ID=SEQF2400.1|ALIF01000006.1_2_REPEAT16;Parent=SEQF2400.1|ALIF01000006.1_2;Note=GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2400.1|ALIF01000006.1	CCTyper	OPERON	104933	110952	6020	-	.	ID=SEQF2400.1|ALIF01000006.1@3;Genome_ID=SEQF2400.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Csn2_1_CAS-II-A,Cas2_5_CAS-I-II-III-IV-V-VI,Cas1_4_CAS-I-II-III-IV-V-VI,Cas9_1_II;Positions=91,92,93,94;E-values=1.50e-100,2.00e-48,1.70e-102,0.00e+00;CoverageSeq=0.977,0.955,0.928,0.995;CoverageHMM=0.991,0.922,0.996,0.998;Strand_Interference=-1;Strand_Adaptation=-1
SEQF2400.1|ALIF01000001.1	CCTyper	OPERON	1117781	1129238	11458	-	.	ID=SEQF2400.1|ALIF01000001.1@24;Genome_ID=SEQF2400.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-A;Complete_Interference=100%;Complete_Adaptation=NA;Best_type=III-A;Best_score=18.0;Genes=Csm6_1_CAS-III,Csm6_1_CAS-III,Csm5gr7_0_CAS-III-A-III-D,Csm4_0_IIIA,Csm3gr7_1_CAS-III-A-III-D,Csm2gr11_7_CAS-III-A,Cas10_1_CAS-III,Cas6_0_I-III,Cas2_2_CAS-I-II-III-IV-V-VI,Cas1_0_CAS-I-II-III-IV-V-VI;Positions=1038,1039,1040,1041,1042,1043,1044,1045,1046,1048;E-values=1.20e-130,2.40e-96,1.80e-34,1.30e-39,2.80e-73,2.70e-22,2.30e-196,2.20e-30,6.70e-23,1.80e-55;CoverageSeq=0.844,0.832,0.74,0.94,0.919,0.924,0.922,0.82,0.636,0.927;CoverageHMM=0.964,0.9,0.732,0.964,0.981,0.982,0.997,0.995,0.873,0.681;Strand_Interference=-1;Strand_Adaptation=NA
SEQF2400.1|ALIF01000001.1	CCTyper	CDS	1123274	1125550	759	-	.	ID=SEQF2400.1|ALIF01000001.1_1044_cas;Genome_ID=SEQF2400.1;Feature_type=CDS;Product=Cas Prediction : Cas10_1_CAS-III;coding_strand=-;E-value=2.3e-196;Score=651.2;Coverage_Seq=0.922266139657444;Coverage_Hmm=0.9969418960244648
SEQF2400.1|ALIF01000001.1	CCTyper	CDS	1128537	1129238	234	-	.	ID=SEQF2400.1|ALIF01000001.1_1048_cas;Genome_ID=SEQF2400.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.7999999999999997e-55;Score=185.3;Coverage_Seq=0.9273504273504274;Coverage_Hmm=0.6813880126182965
SEQF2400.1|ALIF01000006.1	CCTyper	CDS	105926	106795	290	-	.	ID=SEQF2400.1|ALIF01000006.1_93_cas;Genome_ID=SEQF2400.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.7e-102;Score=339.3;Coverage_Seq=0.9275862068965517;Coverage_Hmm=0.9963636363636363
SEQF2400.1|ALIF01000001.1	CCTyper	CDS	1127905	1128234	110	-	.	ID=SEQF2400.1|ALIF01000001.1_1046_cas;Genome_ID=SEQF2400.1;Feature_type=CDS;Product=Cas Prediction : Cas2_2_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=6.7e-23;Score=77.8;Coverage_Seq=0.6363636363636364;Coverage_Hmm=0.8734177215189873
SEQF2400.1|ALIF01000006.1	CCTyper	CDS	105585	105914	110	-	.	ID=SEQF2400.1|ALIF01000006.1_92_cas;Genome_ID=SEQF2400.1;Feature_type=CDS;Product=Cas Prediction : Cas2_5_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=2e-48;Score=160.4;Coverage_Seq=0.9545454545454546;Coverage_Hmm=0.9224137931034483
SEQF2400.1|ALIF01000001.1	CCTyper	CDS	1125531	1126262	244	-	.	ID=SEQF2400.1|ALIF01000001.1_1045_cas;Genome_ID=SEQF2400.1;Feature_type=CDS;Product=Cas Prediction : Cas6_0_I-III;coding_strand=-;E-value=2.2000000000000002e-30;Score=103.6;Coverage_Seq=0.819672131147541;Coverage_Hmm=0.995
SEQF2400.1|ALIF01000006.1	CCTyper	CDS	106795	110952	1386	-	.	ID=SEQF2400.1|ALIF01000006.1_94_cas;Genome_ID=SEQF2400.1;Feature_type=CDS;Product=Cas Prediction : Cas9_1_II;coding_strand=-;E-value=0.0;Score=1059.9;Coverage_Seq=0.9949494949494949;Coverage_Hmm=0.9982142857142857
SEQF2400.1|ALIF01000001.1	CCTyper	CDS	1122878	1123270	131	-	.	ID=SEQF2400.1|ALIF01000001.1_1043_cas;Genome_ID=SEQF2400.1;Feature_type=CDS;Product=Cas Prediction : Csm2gr11_7_CAS-III-A;coding_strand=-;E-value=2.7e-22;Score=76.9;Coverage_Seq=0.9236641221374046;Coverage_Hmm=0.9818181818181818
SEQF2400.1|ALIF01000001.1	CCTyper	CDS	1122216	1122878	221	-	.	ID=SEQF2400.1|ALIF01000001.1_1042_cas;Genome_ID=SEQF2400.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_1_CAS-III-A-III-D;coding_strand=-;E-value=2.8e-73;Score=243.3;Coverage_Seq=0.918552036199095;Coverage_Hmm=0.9813953488372092
SEQF2400.1|ALIF01000001.1	CCTyper	CDS	1121315	1122214	300	-	.	ID=SEQF2400.1|ALIF01000001.1_1041_cas;Genome_ID=SEQF2400.1;Feature_type=CDS;Product=Cas Prediction : Csm4_0_IIIA;coding_strand=-;E-value=1.3e-39;Score=133.2;Coverage_Seq=0.94;Coverage_Hmm=0.9635761589403974
SEQF2400.1|ALIF01000001.1	CCTyper	CDS	1120239	1121312	358	-	.	ID=SEQF2400.1|ALIF01000001.1_1040_cas;Genome_ID=SEQF2400.1;Feature_type=CDS;Product=Cas Prediction : Csm5gr7_0_CAS-III-A-III-D;coding_strand=-;E-value=1.8e-34;Score=116.6;Coverage_Seq=0.7402234636871509;Coverage_Hmm=0.7315068493150685
SEQF2400.1|ALIF01000001.1	CCTyper	CDS	1117781	1119067	429	-	.	ID=SEQF2400.1|ALIF01000001.1_1038_cas;Genome_ID=SEQF2400.1;Feature_type=CDS;Product=Cas Prediction : Csm6_1_CAS-III;coding_strand=-;E-value=1.2000000000000002e-130;Score=432.7;Coverage_Seq=0.8438228438228438;Coverage_Hmm=0.9638888888888889
SEQF2400.1|ALIF01000001.1	CCTyper	CDS	1119082	1120242	387	-	.	ID=SEQF2400.1|ALIF01000001.1_1039_cas;Genome_ID=SEQF2400.1;Feature_type=CDS;Product=Cas Prediction : Csm6_1_CAS-III;coding_strand=-;E-value=2.3999999999999998e-96;Score=319.8;Coverage_Seq=0.8320413436692506;Coverage_Hmm=0.9
SEQF2400.1|ALIF01000006.1	CCTyper	CDS	104933	105595	221	-	.	ID=SEQF2400.1|ALIF01000006.1_91_cas;Genome_ID=SEQF2400.1;Feature_type=CDS;Product=Cas Prediction : Csn2_1_CAS-II-A;coding_strand=-;E-value=1.5e-100;Score=332.3;Coverage_Seq=0.9773755656108597;Coverage_Hmm=0.9908256880733946