SEQF2420.1|JH932273.1	CCTyper	repeat_region	292071	292546	476	+	.	ID=SEQF2420.1|JH932273.1_1;Genome_ID=SEQF2420.1;Note=Predictor:CCtyper;Start:292071;End:292546;Consensus_Repeat:GATCTAAACCTCATTGATCTAACAA;Number_of_Repeats:8;Repeat_Length:25.0;Average_Spacer_Length:39.4;Repeat_Identity:89.8;Spacer_Identity:46.8;Spacer_Length_Sem:1.6;Trusted:True;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:II-A;Subtype_Probability:0.352;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2420.1|JH932273.1	CCTyper	direct_repeat	292071	292095	25	+	.	ID=SEQF2420.1|JH932273.1_1_REPEAT1;Parent=SEQF2420.1|JH932273.1_1;Note=TGTTCTGACTCCCATGATCTAACAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2420.1|JH932273.1	CCTyper	binding_site	292096	292136	41	+	.	ID=SEQF2420.1|JH932273.1_1_SPACER1;Parent=SEQF2420.1|JH932273.1_1;Note=TCATCTAAAACAGAAAACAGGTATTCCAGGCGCGATAGTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2420.1|JH932273.1	CCTyper	direct_repeat	292137	292161	25	+	.	ID=SEQF2420.1|JH932273.1_1_REPEAT2;Parent=SEQF2420.1|JH932273.1_1;Note=GATCTAAACCTCATTGATCTAACAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2420.1|JH932273.1	CCTyper	binding_site	292162	292202	41	+	.	ID=SEQF2420.1|JH932273.1_1_SPACER2;Parent=SEQF2420.1|JH932273.1_1;Note=TCATCTAAAACTACCTCACACCTCTATTATTTATTTCTTTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2420.1|JH932273.1	CCTyper	direct_repeat	292203	292227	25	+	.	ID=SEQF2420.1|JH932273.1_1_REPEAT3;Parent=SEQF2420.1|JH932273.1_1;Note=GATCTAAACCTCATTGATCTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2420.1|JH932273.1	CCTyper	binding_site	292228	292257	30	+	.	ID=SEQF2420.1|JH932273.1_1_SPACER3;Parent=SEQF2420.1|JH932273.1_1;Note=CGTACGTTGGTACCGCCGCAAAAGCTAATA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2420.1|JH932273.1	CCTyper	direct_repeat	292258	292282	25	+	.	ID=SEQF2420.1|JH932273.1_1_REPEAT4;Parent=SEQF2420.1|JH932273.1_1;Note=GATCTAAACCTCATTGATCTAACAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2420.1|JH932273.1	CCTyper	binding_site	292283	292323	41	+	.	ID=SEQF2420.1|JH932273.1_1_SPACER4;Parent=SEQF2420.1|JH932273.1_1;Note=CCATCTAAAACGTCTTACGCATGTAAACGCCGTTTTCACGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2420.1|JH932273.1	CCTyper	direct_repeat	292324	292348	25	+	.	ID=SEQF2420.1|JH932273.1_1_REPEAT5;Parent=SEQF2420.1|JH932273.1_1;Note=GATCTAAACCTCATTGATCTAACAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2420.1|JH932273.1	CCTyper	binding_site	292349	292389	41	+	.	ID=SEQF2420.1|JH932273.1_1_SPACER5;Parent=SEQF2420.1|JH932273.1_1;Note=TCATCTAAAACCCGCGTTAATGTTGATTTTTCTAAATTCGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2420.1|JH932273.1	CCTyper	direct_repeat	292390	292414	25	+	.	ID=SEQF2420.1|JH932273.1_1_REPEAT6;Parent=SEQF2420.1|JH932273.1_1;Note=GATCTAAACCTCATTGATCTAACAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2420.1|JH932273.1	CCTyper	binding_site	292415	292455	41	+	.	ID=SEQF2420.1|JH932273.1_1_SPACER6;Parent=SEQF2420.1|JH932273.1_1;Note=TCATCTAAAACGTTCCTAGCAGGGACAAGATTCAAGTGCTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2420.1|JH932273.1	CCTyper	direct_repeat	292456	292480	25	+	.	ID=SEQF2420.1|JH932273.1_1_REPEAT7;Parent=SEQF2420.1|JH932273.1_1;Note=GATCTAAACCTCATTGATCTAACAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2420.1|JH932273.1	CCTyper	binding_site	292481	292521	41	+	.	ID=SEQF2420.1|JH932273.1_1_SPACER7;Parent=SEQF2420.1|JH932273.1_1;Note=TCATCTAAAACACGTAAGCACCTTTTGAATTGGAGACTACT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2420.1|JH932273.1	CCTyper	direct_repeat	292522	292546	25	+	.	ID=SEQF2420.1|JH932273.1_1_REPEAT8;Parent=SEQF2420.1|JH932273.1_1;Note=GATCTAAACCTCATTGATCTAACAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2420.1|JH932273.1	CCTyper	repeat_region	305747	305958	212	+	.	ID=SEQF2420.1|JH932273.1-3_3;Genome_ID=SEQF2420.1;Note=Predictor:CCtyper;Start:305747;End:305958;Consensus_Repeat:GGATCACCTCCACATGTGTGGAGAATAC;Number_of_Repeats:4;Repeat_Length:28.8;Average_Spacer_Length:32.3;Repeat_Identity:86.7;Spacer_Identity:48.1;Spacer_Length_Sem:0.3;Trusted:True;Cas_Type_Prediction: I-E;Cas_Subtype_Prediction:I-E;Subtype_Probability:0.794;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2420.1|JH932273.1	CCTyper	direct_repeat	305747	305774	28	+	.	ID=SEQF2420.1|JH932273.1-3_3_REPEAT1;Parent=SEQF2420.1|JH932273.1-3_3;Note=GGATCACCTCCACATGTGTGGAGAATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2420.1|JH932273.1	CCTyper	binding_site	305775	305806	32	+	.	ID=SEQF2420.1|JH932273.1-3_3_SPACER1;Parent=SEQF2420.1|JH932273.1-3_3;Note=TAAACGGCTGTGGCGTTGACACAGCTCAAAGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2420.1|JH932273.1	CCTyper	direct_repeat	305807	305835	29	+	.	ID=SEQF2420.1|JH932273.1-3_3_REPEAT2;Parent=SEQF2420.1|JH932273.1-3_3;Note=AGGATCACCTCCACACACGTGGAGAATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2420.1|JH932273.1	CCTyper	binding_site	305836	305868	33	+	.	ID=SEQF2420.1|JH932273.1-3_3_SPACER2;Parent=SEQF2420.1|JH932273.1-3_3;Note=GCTAACTGGATACCAGTCATCACCGTTAACAGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2420.1|JH932273.1	CCTyper	direct_repeat	305869	305897	29	+	.	ID=SEQF2420.1|JH932273.1-3_3_REPEAT3;Parent=SEQF2420.1|JH932273.1-3_3;Note=AGGATCACCTCCACATGTGTGGAGAATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2420.1|JH932273.1	CCTyper	binding_site	305898	305929	32	+	.	ID=SEQF2420.1|JH932273.1-3_3_SPACER3;Parent=SEQF2420.1|JH932273.1-3_3;Note=TCTGCCTTGTCTCCCGTGCCCTTCAAGATGAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2420.1|JH932273.1	CCTyper	direct_repeat	305930	305958	29	+	.	ID=SEQF2420.1|JH932273.1-3_3_REPEAT4;Parent=SEQF2420.1|JH932273.1-3_3;Note=AGGATCACCTCCACACTCGTGGAGAATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2420.1|JH932273.1	CCTyper	OPERON	292590	302306	9717	-	.	ID=SEQF2420.1|JH932273.1@3;Genome_ID=SEQF2420.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Csn2_3_CAS-II-A,Csn2_3_CAS-II-A,Cas2_9_CAS-I-II-III-IV-V-VI,Cas1_4_CAS-I-II-III-IV-V-VI,Cas9_0_II,Cas9_0_II;Positions=263,265,266,267,269,271;E-values=1.30e-27,5.50e-34,1.40e-54,7.40e-89,1.10e-53,7.90e-109;CoverageSeq=0.952,0.952,0.981,0.888,0.976,0.962;CoverageHMM=0.361,0.63,1.0,0.996,0.249,0.708;Strand_Interference=-1;Strand_Adaptation=-1
SEQF2420.1|JH932273.1	CCTyper	CDS	295236	296144	303	-	.	ID=SEQF2420.1|JH932273.1_267_cas;Genome_ID=SEQF2420.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=7.400000000000001e-89;Score=294.8;Coverage_Seq=0.8877887788778878;Coverage_Hmm=0.9963636363636363
SEQF2420.1|JH932273.1	CCTyper	CDS	294953	295261	103	-	.	ID=SEQF2420.1|JH932273.1_266_cas;Genome_ID=SEQF2420.1;Feature_type=CDS;Product=Cas Prediction : Cas2_9_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.4e-54;Score=179.8;Coverage_Seq=0.9805825242718447;Coverage_Hmm=1.0
SEQF2420.1|JH932273.1	CCTyper	CDS	297345	297965	207	-	.	ID=SEQF2420.1|JH932273.1_269_cas;Genome_ID=SEQF2420.1;Feature_type=CDS;Product=Cas Prediction : Cas9_0_II;coding_strand=-;E-value=1.0999999999999999e-53;Score=180.0;Coverage_Seq=0.9758454106280193;Coverage_Hmm=0.2493975903614458
SEQF2420.1|JH932273.1	CCTyper	CDS	299733	302306	858	-	.	ID=SEQF2420.1|JH932273.1_271_cas;Genome_ID=SEQF2420.1;Feature_type=CDS;Product=Cas Prediction : Cas9_0_II;coding_strand=-;E-value=7.9e-109;Score=362.5;Coverage_Seq=0.9615384615384616;Coverage_Hmm=0.708433734939759
SEQF2420.1|JH932273.1	CCTyper	CDS	292590	292838	83	-	.	ID=SEQF2420.1|JH932273.1_263_cas;Genome_ID=SEQF2420.1;Feature_type=CDS;Product=Cas Prediction : Csn2_3_CAS-II-A;coding_strand=-;E-value=1.3e-27;Score=94.2;Coverage_Seq=0.9518072289156626;Coverage_Hmm=0.3607305936073059
SEQF2420.1|JH932273.1	CCTyper	CDS	294522	294956	145	-	.	ID=SEQF2420.1|JH932273.1_265_cas;Genome_ID=SEQF2420.1;Feature_type=CDS;Product=Cas Prediction : Csn2_3_CAS-II-A;coding_strand=-;E-value=5.5e-34;Score=115.0;Coverage_Seq=0.9517241379310345;Coverage_Hmm=0.6301369863013698