SEQF2435.1|AP008971.1	CCTyper	repeat_region	79845	80806	962	+	.	ID=SEQF2435.1|AP008971.1_1;Genome_ID=SEQF2435.1;Note=Predictor:CCtyper;Start:79845;End:80806;Consensus_Repeat:GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC;Number_of_Repeats:15;Repeat_Length:36.0;Average_Spacer_Length:30.1;Repeat_Identity:100.0;Spacer_Identity:43.3;Spacer_Length_Sem:0.1;Trusted:True;Cas_Type_Prediction: II-A;Cas_Subtype_Prediction:II-A;Subtype_Probability:0.966;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008971.1	CCTyper	direct_repeat	79845	79880	36	+	.	ID=SEQF2435.1|AP008971.1_1_REPEAT1;Parent=SEQF2435.1|AP008971.1_1;Note=GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008971.1	CCTyper	binding_site	79881	79910	30	+	.	ID=SEQF2435.1|AP008971.1_1_SPACER1;Parent=SEQF2435.1|AP008971.1_1;Note=TTTATCCTCGTCAAACTCTTTTCCACACAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008971.1	CCTyper	direct_repeat	79911	79946	36	+	.	ID=SEQF2435.1|AP008971.1_1_REPEAT2;Parent=SEQF2435.1|AP008971.1_1;Note=GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008971.1	CCTyper	binding_site	79947	79976	30	+	.	ID=SEQF2435.1|AP008971.1_1_SPACER2;Parent=SEQF2435.1|AP008971.1_1;Note=TATGGTGGAGATGAGGAGTATCGTACGAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008971.1	CCTyper	direct_repeat	79977	80012	36	+	.	ID=SEQF2435.1|AP008971.1_1_REPEAT3;Parent=SEQF2435.1|AP008971.1_1;Note=GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008971.1	CCTyper	binding_site	80013	80042	30	+	.	ID=SEQF2435.1|AP008971.1_1_SPACER3;Parent=SEQF2435.1|AP008971.1_1;Note=AGTACGAATTTGGATTTACTCCAAACGACG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008971.1	CCTyper	direct_repeat	80043	80078	36	+	.	ID=SEQF2435.1|AP008971.1_1_REPEAT4;Parent=SEQF2435.1|AP008971.1_1;Note=GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008971.1	CCTyper	binding_site	80079	80108	30	+	.	ID=SEQF2435.1|AP008971.1_1_SPACER4;Parent=SEQF2435.1|AP008971.1_1;Note=GGATTAGGTGAACATACAATTACAGTTACT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008971.1	CCTyper	direct_repeat	80109	80144	36	+	.	ID=SEQF2435.1|AP008971.1_1_REPEAT5;Parent=SEQF2435.1|AP008971.1_1;Note=GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008971.1	CCTyper	binding_site	80145	80174	30	+	.	ID=SEQF2435.1|AP008971.1_1_SPACER5;Parent=SEQF2435.1|AP008971.1_1;Note=TCAAACTTGATGAGGTCAAGGATTTGATTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008971.1	CCTyper	direct_repeat	80175	80210	36	+	.	ID=SEQF2435.1|AP008971.1_1_REPEAT6;Parent=SEQF2435.1|AP008971.1_1;Note=GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008971.1	CCTyper	binding_site	80211	80240	30	+	.	ID=SEQF2435.1|AP008971.1_1_SPACER6;Parent=SEQF2435.1|AP008971.1_1;Note=ATTTCTACACGATTTGTTTCATCATTTGAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008971.1	CCTyper	direct_repeat	80241	80276	36	+	.	ID=SEQF2435.1|AP008971.1_1_REPEAT7;Parent=SEQF2435.1|AP008971.1_1;Note=GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008971.1	CCTyper	binding_site	80277	80306	30	+	.	ID=SEQF2435.1|AP008971.1_1_SPACER7;Parent=SEQF2435.1|AP008971.1_1;Note=TTGCTATTTTTGTTTTAATCTTTAGTTCCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008971.1	CCTyper	direct_repeat	80307	80342	36	+	.	ID=SEQF2435.1|AP008971.1_1_REPEAT8;Parent=SEQF2435.1|AP008971.1_1;Note=GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008971.1	CCTyper	binding_site	80343	80372	30	+	.	ID=SEQF2435.1|AP008971.1_1_SPACER8;Parent=SEQF2435.1|AP008971.1_1;Note=ATACTGATTAATCTGAATGGTTTGAGTGAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008971.1	CCTyper	direct_repeat	80373	80408	36	+	.	ID=SEQF2435.1|AP008971.1_1_REPEAT9;Parent=SEQF2435.1|AP008971.1_1;Note=GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008971.1	CCTyper	binding_site	80409	80438	30	+	.	ID=SEQF2435.1|AP008971.1_1_SPACER9;Parent=SEQF2435.1|AP008971.1_1;Note=ATTGTTTACAAGCTCCCGAATATAAGCTTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008971.1	CCTyper	direct_repeat	80439	80474	36	+	.	ID=SEQF2435.1|AP008971.1_1_REPEAT10;Parent=SEQF2435.1|AP008971.1_1;Note=GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008971.1	CCTyper	binding_site	80475	80504	30	+	.	ID=SEQF2435.1|AP008971.1_1_SPACER10;Parent=SEQF2435.1|AP008971.1_1;Note=TGGTTATAAAAAACCGAAAGCAGAAGTGAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008971.1	CCTyper	direct_repeat	80505	80540	36	+	.	ID=SEQF2435.1|AP008971.1_1_REPEAT11;Parent=SEQF2435.1|AP008971.1_1;Note=GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008971.1	CCTyper	binding_site	80541	80571	31	+	.	ID=SEQF2435.1|AP008971.1_1_SPACER11;Parent=SEQF2435.1|AP008971.1_1;Note=TTTGATGACTACGAATTGCAAGCAGTGTATA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008971.1	CCTyper	direct_repeat	80572	80607	36	+	.	ID=SEQF2435.1|AP008971.1_1_REPEAT12;Parent=SEQF2435.1|AP008971.1_1;Note=GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008971.1	CCTyper	binding_site	80608	80638	31	+	.	ID=SEQF2435.1|AP008971.1_1_SPACER12;Parent=SEQF2435.1|AP008971.1_1;Note=AATGATAATTTAAAAGAATACTTAATTTATA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008971.1	CCTyper	direct_repeat	80639	80674	36	+	.	ID=SEQF2435.1|AP008971.1_1_REPEAT13;Parent=SEQF2435.1|AP008971.1_1;Note=GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008971.1	CCTyper	binding_site	80675	80704	30	+	.	ID=SEQF2435.1|AP008971.1_1_SPACER13;Parent=SEQF2435.1|AP008971.1_1;Note=GAGTAAAACATAAAAAGATTGAGTATGTTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008971.1	CCTyper	direct_repeat	80705	80740	36	+	.	ID=SEQF2435.1|AP008971.1_1_REPEAT14;Parent=SEQF2435.1|AP008971.1_1;Note=GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008971.1	CCTyper	binding_site	80741	80770	30	+	.	ID=SEQF2435.1|AP008971.1_1_SPACER14;Parent=SEQF2435.1|AP008971.1_1;Note=CTGAAAGTTTAGGATTGACGTTCGAGGACA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008971.1	CCTyper	direct_repeat	80771	80806	36	+	.	ID=SEQF2435.1|AP008971.1_1_REPEAT15;Parent=SEQF2435.1|AP008971.1_1;Note=GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008972.1	CCTyper	repeat_region	46135	46279	145	+	.	ID=SEQF2435.1|AP008972.1-1_3;Genome_ID=SEQF2435.1;Note=Predictor:CCtyper;Start:46135;End:46279;Consensus_Repeat:AGGAACACCCCCGCATGTGCGGGTAA;Number_of_Repeats:3;Repeat_Length:25.3;Average_Spacer_Length:34.5;Repeat_Identity:76.6;Spacer_Identity:46.8;Spacer_Length_Sem:0.5;Trusted:True;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:IV-A1;Subtype_Probability:0.714;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008972.1	CCTyper	direct_repeat	46135	46160	26	+	.	ID=SEQF2435.1|AP008972.1-1_3_REPEAT1;Parent=SEQF2435.1|AP008972.1-1_3;Note=AGGAACACCCCCGCATGTGCGGGTAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008972.1	CCTyper	binding_site	46161	46195	35	+	.	ID=SEQF2435.1|AP008972.1-1_3_SPACER1;Parent=SEQF2435.1|AP008972.1-1_3;Note=AACATAAAGTTATAATTATAATCTTTTTTTATAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008972.1	CCTyper	direct_repeat	46196	46224	29	+	.	ID=SEQF2435.1|AP008972.1-1_3_REPEAT2;Parent=SEQF2435.1|AP008972.1-1_3;Note=AGGAACACCCCCGCTTGTGCGGGTAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008972.1	CCTyper	binding_site	46225	46258	34	+	.	ID=SEQF2435.1|AP008972.1-1_3_SPACER2;Parent=SEQF2435.1|AP008972.1-1_3;Note=CATAGATACTTTTTTCGCTCCTTGAAATAATCAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008972.1	CCTyper	direct_repeat	46259	46279	21	+	.	ID=SEQF2435.1|AP008972.1-1_3_REPEAT3;Parent=SEQF2435.1|AP008972.1-1_3;Note=AAACACCCCCGCTTGTGCGGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF2435.1|AP008972.1	CCTyper	OPERON	46597	50565	3969	-	.	ID=SEQF2435.1|AP008972.1@3;Genome_ID=SEQF2435.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type I-E;Complete_Interference=67%;Complete_Adaptation=0%;Best_type=I-E;Best_score=14.0;Genes=Cas6e_2_CAS-I-II-III-IV-V-VI,Cas5_0_IE,Cas7_1_CAS-I-E,Cas8e_4_CAS-I-E;Positions=61,62,63,64;E-values=2.90e-40,3.60e-36,1.10e-106,5.50e-54;CoverageSeq=0.962,0.939,0.942,0.848;CoverageHMM=0.995,0.974,0.992,0.905;Strand_Interference=-1;Strand_Adaptation=NA
SEQF2435.1|AP008971.1	CCTyper	OPERON	73918	81919	8002	+	.	ID=SEQF2435.1|AP008971.1@5;Genome_ID=SEQF2435.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Cas9_0_II,Cas1_0_II,Cas2_9_CAS-I-II-III-IV-V-VI,Csn2_0_IIA,PD_DExK_0_CAS-I-II-III-IV-V-VI;Positions=60,61,62,63,64;E-values=2.00e-178,2.40e-88,1.10e-33,5.90e-56,2.00e-48;CoverageSeq=0.829,0.924,0.99,0.981,0.584;CoverageHMM=0.973,0.996,1.0,0.995,1.0;Strand_Interference=1;Strand_Adaptation=1
SEQF2435.1|AP008972.1	CCTyper	OPERON	168361	169593	1233	-	.	ID=SEQF2435.1|AP008972.1@7;Genome_ID=SEQF2435.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-D;Complete_Interference=100%;Complete_Adaptation=0%;Best_type=II-D;Best_score=4.0;Genes=Cas9_0_II-D;Positions=175;E-values=3.50e-19;CoverageSeq=0.433;CoverageHMM=0.22;Strand_Interference=-1;Strand_Adaptation=NA
SEQF2435.1|AP008971.1	CCTyper	CDS	77964	78836	291	+	.	ID=SEQF2435.1|AP008971.1_61_cas;Genome_ID=SEQF2435.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_II;coding_strand=+;E-value=2.4e-88;Score=292.7;Coverage_Seq=0.9243986254295533;Coverage_Hmm=0.9964028776978417
SEQF2435.1|AP008971.1	CCTyper	CDS	78841	79146	102	+	.	ID=SEQF2435.1|AP008971.1_62_cas;Genome_ID=SEQF2435.1;Feature_type=CDS;Product=Cas Prediction : Cas2_9_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.1e-33;Score=112.3;Coverage_Seq=0.9901960784313726;Coverage_Hmm=1.0
SEQF2435.1|AP008972.1	CCTyper	CDS	47233	47919	229	-	.	ID=SEQF2435.1|AP008972.1_62_cas;Genome_ID=SEQF2435.1;Feature_type=CDS;Product=Cas Prediction : Cas5_0_IE;coding_strand=-;E-value=3.6e-36;Score=121.7;Coverage_Seq=0.9388646288209607;Coverage_Hmm=0.9739130434782609
SEQF2435.1|AP008972.1	CCTyper	CDS	46597	47232	212	-	.	ID=SEQF2435.1|AP008972.1_61_cas;Genome_ID=SEQF2435.1;Feature_type=CDS;Product=Cas Prediction : Cas6e_2_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=2.9e-40;Score=135.5;Coverage_Seq=0.9622641509433962;Coverage_Hmm=0.995049504950495
SEQF2435.1|AP008972.1	CCTyper	CDS	47922	49016	365	-	.	ID=SEQF2435.1|AP008972.1_63_cas;Genome_ID=SEQF2435.1;Feature_type=CDS;Product=Cas Prediction : Cas7_1_CAS-I-E;coding_strand=-;E-value=1.1e-106;Score=354.0;Coverage_Seq=0.9424657534246575;Coverage_Hmm=0.9916434540389972
SEQF2435.1|AP008972.1	CCTyper	CDS	49006	50565	520	-	.	ID=SEQF2435.1|AP008972.1_64_cas;Genome_ID=SEQF2435.1;Feature_type=CDS;Product=Cas Prediction : Cas8e_4_CAS-I-E;coding_strand=-;E-value=5.5e-54;Score=180.6;Coverage_Seq=0.8480769230769231;Coverage_Hmm=0.9053763440860215
SEQF2435.1|AP008971.1	CCTyper	CDS	73918	77964	1349	+	.	ID=SEQF2435.1|AP008971.1_60_cas;Genome_ID=SEQF2435.1;Feature_type=CDS;Product=Cas Prediction : Cas9_0_II;coding_strand=+;E-value=2e-178;Score=592.1;Coverage_Seq=0.8287620459599704;Coverage_Hmm=0.9734939759036144
SEQF2435.1|AP008972.1	CCTyper	CDS	168361	169593	411	-	.	ID=SEQF2435.1|AP008972.1_175_cas;Genome_ID=SEQF2435.1;Feature_type=CDS;Product=Cas Prediction : Cas9_0_II-D;coding_strand=-;E-value=3.5e-19;Score=65.4;Coverage_Seq=0.43309002433090027;Coverage_Hmm=0.22039859320046892
SEQF2435.1|AP008971.1	CCTyper	CDS	79143	79790	216	+	.	ID=SEQF2435.1|AP008971.1_63_cas;Genome_ID=SEQF2435.1;Feature_type=CDS;Product=Cas Prediction : Csn2_0_IIA;coding_strand=+;E-value=5.9e-56;Score=186.3;Coverage_Seq=0.9814814814814815;Coverage_Hmm=0.9954954954954955
SEQF2435.1|AP008971.1	CCTyper	CDS	80888	81919	344	+	.	ID=SEQF2435.1|AP008971.1_64_cas;Genome_ID=SEQF2435.1;Feature_type=CDS;Product=Cas Prediction : PD_DExK_0_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=2e-48;Score=161.1;Coverage_Seq=0.5843023255813954;Coverage_Hmm=1.0