SEQF3060.1|CP014239.1	CCTyper	repeat_region	1018343	1018738	396	+	.	ID=SEQF3060.1|CP014239.1_1;Genome_ID=SEQF3060.1;Note=Predictor:CCtyper;Start:1018343;End:1018738;Consensus_Repeat:GTTTCCGTCCCCTTGCGGGGATGTGGTTTTAAAAT;Number_of_Repeats:6;Repeat_Length:35;Average_Spacer_Length:37.2;Repeat_Identity:91.7;Spacer_Identity:41.6;Spacer_Length_Sem:1.0;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.943;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3060.1|CP014239.1	CCTyper	direct_repeat	1018343	1018377	35	+	.	ID=SEQF3060.1|CP014239.1_1_REPEAT1;Parent=SEQF3060.1|CP014239.1_1;Note=GGTTCCGGCCCCTTACGGGGATATGGTTTTGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3060.1|CP014239.1	CCTyper	binding_site	1018378	1018413	36	+	.	ID=SEQF3060.1|CP014239.1_1_SPACER1;Parent=SEQF3060.1|CP014239.1_1;Note=GTCAAGAAGGTGCATGGAACCATTATGGTATGCCTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3060.1|CP014239.1	CCTyper	direct_repeat	1018414	1018448	35	+	.	ID=SEQF3060.1|CP014239.1_1_REPEAT2;Parent=SEQF3060.1|CP014239.1_1;Note=GTTTCCGTCCCCTTGCGGGGATGTGGTTTTAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3060.1|CP014239.1	CCTyper	binding_site	1018449	1018487	39	+	.	ID=SEQF3060.1|CP014239.1_1_SPACER2;Parent=SEQF3060.1|CP014239.1_1;Note=AGTGTGCGAGTGTTGCATAGGGCGTCGCGCCTCATGGCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3060.1|CP014239.1	CCTyper	direct_repeat	1018488	1018522	35	+	.	ID=SEQF3060.1|CP014239.1_1_REPEAT3;Parent=SEQF3060.1|CP014239.1_1;Note=GTTTCCGTCCCCTTGCGGGGATGTGGTTTTAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3060.1|CP014239.1	CCTyper	binding_site	1018523	1018556	34	+	.	ID=SEQF3060.1|CP014239.1_1_SPACER3;Parent=SEQF3060.1|CP014239.1_1;Note=TCCCTTAACTGGAAGCGTTGGTGCTCTGTTTTTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3060.1|CP014239.1	CCTyper	direct_repeat	1018557	1018591	35	+	.	ID=SEQF3060.1|CP014239.1_1_REPEAT4;Parent=SEQF3060.1|CP014239.1_1;Note=GTTTCCGTCCCCTTGCGGGGATGTGGTTTTAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3060.1|CP014239.1	CCTyper	binding_site	1018592	1018629	38	+	.	ID=SEQF3060.1|CP014239.1_1_SPACER4;Parent=SEQF3060.1|CP014239.1_1;Note=ATACTGTTTCCCTTATCATTTCGGCAATCTGCCCTATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3060.1|CP014239.1	CCTyper	direct_repeat	1018630	1018664	35	+	.	ID=SEQF3060.1|CP014239.1_1_REPEAT5;Parent=SEQF3060.1|CP014239.1_1;Note=GTTTCCGTCCCCTTGCGGGGATGTGGTTTTAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3060.1|CP014239.1	CCTyper	binding_site	1018665	1018703	39	+	.	ID=SEQF3060.1|CP014239.1_1_SPACER5;Parent=SEQF3060.1|CP014239.1_1;Note=TGTAAGCGCGGTGAAGGCGTTCAGGACAGCACGAAAAGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3060.1|CP014239.1	CCTyper	direct_repeat	1018704	1018738	35	+	.	ID=SEQF3060.1|CP014239.1_1_REPEAT6;Parent=SEQF3060.1|CP014239.1_1;Note=GTTTCCGTCCCCTTGCGGGGATGTGGTTTTAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3060.1|CP014239.1	CCTyper	repeat_region	2038003	2038245	243	+	.	ID=SEQF3060.1|CP014239.1_2;Genome_ID=SEQF3060.1;Note=Predictor:CCtyper;Start:2038003;End:2038245;Consensus_Repeat:ACAAAGCCGCGTGCGGCATTGAAAC;Number_of_Repeats:4;Repeat_Length:25;Average_Spacer_Length:47.7;Repeat_Identity:83.3;Spacer_Identity:48.2;Spacer_Length_Sem:0.3;Trusted:True;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:IV-A2;Subtype_Probability:0.362;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3060.1|CP014239.1	CCTyper	direct_repeat	2038003	2038027	25	+	.	ID=SEQF3060.1|CP014239.1_2_REPEAT1;Parent=SEQF3060.1|CP014239.1_2;Note=ACAAAGCCGCGTGCGGCATTGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3060.1|CP014239.1	CCTyper	binding_site	2038028	2038074	47	+	.	ID=SEQF3060.1|CP014239.1_2_SPACER1;Parent=SEQF3060.1|CP014239.1_2;Note=TAGCCGTAAAGAGGGCGTGCCTCCCACCATGCAGGGCTGCACCACAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3060.1|CP014239.1	CCTyper	direct_repeat	2038075	2038099	25	+	.	ID=SEQF3060.1|CP014239.1_2_REPEAT2;Parent=SEQF3060.1|CP014239.1_2;Note=ACAAAGCCGCGTGCGGCATTGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3060.1|CP014239.1	CCTyper	binding_site	2038100	2038147	48	+	.	ID=SEQF3060.1|CP014239.1_2_SPACER2;Parent=SEQF3060.1|CP014239.1_2;Note=TTCAGAATTGTTCTTCATAAAGAATCCCTCCTAAAAGCTGCACCACCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3060.1|CP014239.1	CCTyper	direct_repeat	2038148	2038172	25	+	.	ID=SEQF3060.1|CP014239.1_2_REPEAT3;Parent=SEQF3060.1|CP014239.1_2;Note=ACAAAGCCGCGTGCGGCATTGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3060.1|CP014239.1	CCTyper	binding_site	2038173	2038220	48	+	.	ID=SEQF3060.1|CP014239.1_2_SPACER3;Parent=SEQF3060.1|CP014239.1_2;Note=GAAACAAGTCCGGCTTTTGTCGCCATGTACATCTTGGCTGCACCACCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3060.1|CP014239.1	CCTyper	direct_repeat	2038221	2038245	25	+	.	ID=SEQF3060.1|CP014239.1_2_REPEAT4;Parent=SEQF3060.1|CP014239.1_2;Note=ACAAAGCCGCGTGCCTACATTGATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3060.1|CP014239.1	CCTyper	OPERON	1019093	1027770	8678	-	.	ID=SEQF3060.1|CP014239.1@17;Genome_ID=SEQF3060.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-A;Complete_Interference=100%;Complete_Adaptation=NA;Best_type=III-A;Best_score=20.0;Genes=Cas2_2_CAS-I-II-III-IV-V-VI,Cas1_0_CAS-I-II-III-IV-V-VI,Csm6_7_CAS-III,Cas6_8_CAS-I-II-III-IV-V-VI,Csm5_0_IIIA,Csm4gr5_0_CAS-III-A,Csm3gr7_1_CAS-III-A-III-D,Csm2gr11_7_CAS-III-A,Cas10_1_CAS-III;Positions=962,963,964,965,966,967,968,969,970;E-values=1.60e-24,2.10e-31,2.00e-53,6.10e-26,1.40e-18,5.80e-21,6.80e-65,2.10e-27,2.30e-152;CoverageSeq=0.689,0.88,0.807,0.948,0.842,0.95,0.825,0.873,0.745;CoverageHMM=0.924,0.363,0.941,0.873,0.89,0.97,0.958,0.973,0.899;Strand_Interference=-1;Strand_Adaptation=NA
SEQF3060.1|CP014239.1	CCTyper	OPERON	2024879	2037611	12733	+	.	ID=SEQF3060.1|CP014239.1@26;Genome_ID=SEQF3060.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-D;Complete_Interference=67%;Complete_Adaptation=NA;Best_type=III-D;Best_score=13.0;Genes=CasR_4_CAS-III-D,CasR_4_CAS-III-D,Csx20_1_CAS-I-III,Cas6_15_CAS-I-II-III-IV-V-VI,Cas10_7_CAS-III,Csm3gr7_11_CAS-III-A-III-D,Csx10gr5_1_CAS-III-D,Csm3gr7_0_CAS-III-A-III-D,Csx19_1_CAS-III-D,Csm3gr7_4_CAS-III-A-III-D;Positions=1925,1926,1927,1928,1929,1930,1931,1932,1933,1934;E-values=1.10e-15,3.00e-18,8.10e-36,1.50e-16,5.60e-78,1.90e-32,9.20e-15,1.20e-31,4.80e-36,3.60e-103;CoverageSeq=0.339,0.63,0.967,0.423,0.817,0.706,0.499,0.673,0.855,0.955;CoverageHMM=0.374,0.7,0.968,1.0,0.998,0.926,0.72,0.81,0.895,0.912;Strand_Interference=1;Strand_Adaptation=NA
SEQF3060.1|CP014239.1	CCTyper	CDS	1025350	1027770	807	-	.	ID=SEQF3060.1|CP014239.1_970_cas;Genome_ID=SEQF3060.1;Feature_type=CDS;Product=Cas Prediction : Cas10_1_CAS-III;coding_strand=-;E-value=2.3e-152;Score=505.9;Coverage_Seq=0.7447335811648079;Coverage_Hmm=0.8990825688073395
SEQF3060.1|CP014239.1	CCTyper	CDS	2029803	2031392	530	+	.	ID=SEQF3060.1|CP014239.1_1929_cas;Genome_ID=SEQF3060.1;Feature_type=CDS;Product=Cas Prediction : Cas10_7_CAS-III;coding_strand=+;E-value=5.6e-78;Score=259.8;Coverage_Seq=0.8169811320754717;Coverage_Hmm=0.9975609756097561
SEQF3060.1|CP014239.1	CCTyper	CDS	1019421	1019819	133	-	.	ID=SEQF3060.1|CP014239.1_963_cas;Genome_ID=SEQF3060.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=2.1e-31;Score=106.2;Coverage_Seq=0.8796992481203008;Coverage_Hmm=0.3627760252365931
SEQF3060.1|CP014239.1	CCTyper	CDS	1019093	1019410	106	-	.	ID=SEQF3060.1|CP014239.1_962_cas;Genome_ID=SEQF3060.1;Feature_type=CDS;Product=Cas Prediction : Cas2_2_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.5999999999999999e-24;Score=83.0;Coverage_Seq=0.6886792452830188;Coverage_Hmm=0.9240506329113924
SEQF3060.1|CP014239.1	CCTyper	CDS	2028885	2029706	274	+	.	ID=SEQF3060.1|CP014239.1_1928_cas;Genome_ID=SEQF3060.1;Feature_type=CDS;Product=Cas Prediction : Cas6_15_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.5e-16;Score=58.1;Coverage_Seq=0.4233576642335766;Coverage_Hmm=1.0
SEQF3060.1|CP014239.1	CCTyper	CDS	1021220	1021975	252	-	.	ID=SEQF3060.1|CP014239.1_965_cas;Genome_ID=SEQF3060.1;Feature_type=CDS;Product=Cas Prediction : Cas6_8_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=6.1e-26;Score=88.5;Coverage_Seq=0.9484126984126984;Coverage_Hmm=0.8727272727272727
SEQF3060.1|CP014239.1	CCTyper	CDS	2024879	2026729	617	+	.	ID=SEQF3060.1|CP014239.1_1925_cas;Genome_ID=SEQF3060.1;Feature_type=CDS;Product=Cas Prediction : CasR_4_CAS-III-D;coding_strand=+;E-value=1.1e-15;Score=54.8;Coverage_Seq=0.3387358184764992;Coverage_Hmm=0.37358490566037733
SEQF3060.1|CP014239.1	CCTyper	CDS	2026731	2028467	579	+	.	ID=SEQF3060.1|CP014239.1_1926_cas;Genome_ID=SEQF3060.1;Feature_type=CDS;Product=Cas Prediction : CasR_4_CAS-III-D;coding_strand=+;E-value=3e-18;Score=63.2;Coverage_Seq=0.6303972366148531;Coverage_Hmm=0.7
SEQF3060.1|CP014239.1	CCTyper	CDS	1024932	1025357	142	-	.	ID=SEQF3060.1|CP014239.1_969_cas;Genome_ID=SEQF3060.1;Feature_type=CDS;Product=Cas Prediction : Csm2gr11_7_CAS-III-A;coding_strand=-;E-value=2.1e-27;Score=93.4;Coverage_Seq=0.8732394366197183;Coverage_Hmm=0.9727272727272728
SEQF3060.1|CP014239.1	CCTyper	CDS	2033853	2035229	459	+	.	ID=SEQF3060.1|CP014239.1_1932_cas;Genome_ID=SEQF3060.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_0_CAS-III-A-III-D;coding_strand=+;E-value=1.2e-31;Score=107.0;Coverage_Seq=0.673202614379085;Coverage_Hmm=0.8095238095238095
SEQF3060.1|CP014239.1	CCTyper	CDS	2031395	2032252	286	+	.	ID=SEQF3060.1|CP014239.1_1930_cas;Genome_ID=SEQF3060.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_11_CAS-III-A-III-D;coding_strand=+;E-value=1.9e-32;Score=109.5;Coverage_Seq=0.7062937062937062;Coverage_Hmm=0.9259259259259259
SEQF3060.1|CP014239.1	CCTyper	CDS	1024195	1024932	246	-	.	ID=SEQF3060.1|CP014239.1_968_cas;Genome_ID=SEQF3060.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_1_CAS-III-A-III-D;coding_strand=-;E-value=6.8000000000000006e-65;Score=215.9;Coverage_Seq=0.8252032520325203;Coverage_Hmm=0.958139534883721
SEQF3060.1|CP014239.1	CCTyper	CDS	2035818	2037611	598	+	.	ID=SEQF3060.1|CP014239.1_1934_cas;Genome_ID=SEQF3060.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_4_CAS-III-A-III-D;coding_strand=+;E-value=3.6e-103;Score=343.7;Coverage_Seq=0.9548494983277592;Coverage_Hmm=0.9125
SEQF3060.1|CP014239.1	CCTyper	CDS	1023188	1024198	337	-	.	ID=SEQF3060.1|CP014239.1_967_cas;Genome_ID=SEQF3060.1;Feature_type=CDS;Product=Cas Prediction : Csm4gr5_0_CAS-III-A;coding_strand=-;E-value=5.8e-21;Score=72.1;Coverage_Seq=0.9495548961424333;Coverage_Hmm=0.9700996677740864
SEQF3060.1|CP014239.1	CCTyper	CDS	1021959	1023191	411	-	.	ID=SEQF3060.1|CP014239.1_966_cas;Genome_ID=SEQF3060.1;Feature_type=CDS;Product=Cas Prediction : Csm5_0_IIIA;coding_strand=-;E-value=1.4e-18;Score=64.5;Coverage_Seq=0.8418491484184915;Coverage_Hmm=0.8901098901098901
SEQF3060.1|CP014239.1	CCTyper	CDS	1019862	1021214	451	-	.	ID=SEQF3060.1|CP014239.1_964_cas;Genome_ID=SEQF3060.1;Feature_type=CDS;Product=Cas Prediction : Csm6_7_CAS-III;coding_strand=-;E-value=2e-53;Score=178.6;Coverage_Seq=0.8070953436807096;Coverage_Hmm=0.9410187667560321
SEQF3060.1|CP014239.1	CCTyper	CDS	2032252	2033856	535	+	.	ID=SEQF3060.1|CP014239.1_1931_cas;Genome_ID=SEQF3060.1;Feature_type=CDS;Product=Cas Prediction : Csx10gr5_1_CAS-III-D;coding_strand=+;E-value=9.2e-15;Score=51.8;Coverage_Seq=0.49906542056074765;Coverage_Hmm=0.7201017811704835
SEQF3060.1|CP014239.1	CCTyper	CDS	2035226	2035825	200	+	.	ID=SEQF3060.1|CP014239.1_1933_cas;Genome_ID=SEQF3060.1;Feature_type=CDS;Product=Cas Prediction : Csx19_1_CAS-III-D;coding_strand=+;E-value=4.8e-36;Score=121.1;Coverage_Seq=0.855;Coverage_Hmm=0.895
SEQF3060.1|CP014239.1	CCTyper	CDS	2028470	2028835	122	+	.	ID=SEQF3060.1|CP014239.1_1927_cas;Genome_ID=SEQF3060.1;Feature_type=CDS;Product=Cas Prediction : Csx20_1_CAS-I-III;coding_strand=+;E-value=8.1e-36;Score=120.4;Coverage_Seq=0.9672131147540983;Coverage_Hmm=0.968