SEQF3309.1|AHRH01000129.1	CCTyper	repeat_region	1	211	211	+	.	ID=SEQF3309.1|AHRH01000129.1_1;Genome_ID=SEQF3309.1;Note=Predictor:CCtyper;Start:1;End:211;Consensus_Repeat:ATTTTACCCGCACGAGCGGGGGTGATCC;Number_of_Repeats:4;Repeat_Length:28;Average_Spacer_Length:33;Repeat_Identity:96.6;Spacer_Identity:39.8;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:I-E;Subtype_Probability:0.261;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3309.1|AHRH01000129.1	CCTyper	direct_repeat	1	28	28	+	.	ID=SEQF3309.1|AHRH01000129.1_1_REPEAT1;Parent=SEQF3309.1|AHRH01000129.1_1;Note=ATTTTACCCGCACGAGCGGGGGTGATCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3309.1|AHRH01000129.1	CCTyper	binding_site	29	61	33	+	.	ID=SEQF3309.1|AHRH01000129.1_1_SPACER1;Parent=SEQF3309.1|AHRH01000129.1_1;Note=CGAGAAACACAGCGCGAGTCACAGCGAAAAGCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3309.1|AHRH01000129.1	CCTyper	direct_repeat	62	89	28	+	.	ID=SEQF3309.1|AHRH01000129.1_1_REPEAT2;Parent=SEQF3309.1|AHRH01000129.1_1;Note=ATTTTACCCGCACGAGCGGGGGTGATCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3309.1|AHRH01000129.1	CCTyper	binding_site	90	122	33	+	.	ID=SEQF3309.1|AHRH01000129.1_1_SPACER2;Parent=SEQF3309.1|AHRH01000129.1_1;Note=TTAAATTTTGTCGCTTGCTGTACTTGTCGTTAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3309.1|AHRH01000129.1	CCTyper	direct_repeat	123	150	28	+	.	ID=SEQF3309.1|AHRH01000129.1_1_REPEAT3;Parent=SEQF3309.1|AHRH01000129.1_1;Note=ATTTTACCCGCATGAGCGGGGGTGATCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3309.1|AHRH01000129.1	CCTyper	binding_site	151	183	33	+	.	ID=SEQF3309.1|AHRH01000129.1_1_SPACER3;Parent=SEQF3309.1|AHRH01000129.1_1;Note=TAGCCTTAATTTCCTCTCTCCTGCATTTCAGTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3309.1|AHRH01000129.1	CCTyper	direct_repeat	184	211	28	+	.	ID=SEQF3309.1|AHRH01000129.1_1_REPEAT4;Parent=SEQF3309.1|AHRH01000129.1_1;Note=ATTTTACCCGCACGAGCGGGGGTGATCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3309.1|AHRH01000019.1	CCTyper	OPERON	84032	89928	5897	+	.	ID=SEQF3309.1|AHRH01000019.1@3;Genome_ID=SEQF3309.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Cas9_1_II,Cas1_4_CAS-I-II-III-IV-V-VI,Cas2_5_CAS-I-II-III-IV-V-VI,Csn2_1_CAS-II-A;Positions=79,80,81,82;E-values=0.00e+00,2.20e-103,1.40e-51,9.70e-107;CoverageSeq=0.996,0.931,0.965,0.982;CoverageHMM=0.999,0.996,0.983,0.995;Strand_Interference=1;Strand_Adaptation=1
SEQF3309.1|AHRH01000012.1	CCTyper	OPERON	59939	70595	10657	+	.	ID=SEQF3309.1|AHRH01000012.1@2;Genome_ID=SEQF3309.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type I-E;Complete_Interference=100%;Complete_Adaptation=50%;Best_type=I-E;Best_score=24.0;Genes=WYL_3_CAS-I-II-III-IV-V-VI,Cas3_0_CAS-I,Cas8e_4_CAS-I-E,Cse2gr11_5_CAS-I-E,Cas7_1_CAS-I-E,Cas5_0_IE,Cas6e_2_CAS-I-II-III-IV-V-VI,Cas1_0_IE,DEDDh_0_CAS-I-II-III-IV-V-VI;Positions=57,58,59,60,61,62,63,64,65;E-values=1.10e-09,9.50e-70,1.90e-91,1.20e-67,2.60e-113,2.20e-42,2.30e-47,3.00e-108,4.60e-35;CoverageSeq=0.485,0.438,0.888,0.95,0.943,0.862,0.972,0.854,0.512;CoverageHMM=0.89,0.983,0.994,0.975,0.997,0.974,0.995,0.993,0.981;Strand_Interference=1;Strand_Adaptation=1
SEQF3309.1|AHRH01000012.1	CCTyper	CDS	68750	69691	314	+	.	ID=SEQF3309.1|AHRH01000012.1_64_cas;Genome_ID=SEQF3309.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_IE;coding_strand=+;E-value=3e-108;Score=357.8;Coverage_Seq=0.8535031847133758;Coverage_Hmm=0.9925650557620818
SEQF3309.1|AHRH01000019.1	CCTyper	CDS	88069	88935	289	+	.	ID=SEQF3309.1|AHRH01000019.1_80_cas;Genome_ID=SEQF3309.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=2.2e-103;Score=342.0;Coverage_Seq=0.9307958477508651;Coverage_Hmm=0.9963636363636363
SEQF3309.1|AHRH01000019.1	CCTyper	CDS	88932	89276	115	+	.	ID=SEQF3309.1|AHRH01000019.1_81_cas;Genome_ID=SEQF3309.1;Feature_type=CDS;Product=Cas Prediction : Cas2_5_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.4e-51;Score=170.4;Coverage_Seq=0.9652173913043478;Coverage_Hmm=0.9827586206896551
SEQF3309.1|AHRH01000012.1	CCTyper	CDS	61112	63898	929	+	.	ID=SEQF3309.1|AHRH01000012.1_58_cas;Genome_ID=SEQF3309.1;Feature_type=CDS;Product=Cas Prediction : Cas3_0_CAS-I;coding_strand=+;E-value=9.5e-70;Score=232.2;Coverage_Seq=0.4381054897739505;Coverage_Hmm=0.9830028328611898
SEQF3309.1|AHRH01000012.1	CCTyper	CDS	67385	68101	239	+	.	ID=SEQF3309.1|AHRH01000012.1_62_cas;Genome_ID=SEQF3309.1;Feature_type=CDS;Product=Cas Prediction : Cas5_0_IE;coding_strand=+;E-value=2.2e-42;Score=142.0;Coverage_Seq=0.8619246861924686;Coverage_Hmm=0.9739130434782609
SEQF3309.1|AHRH01000012.1	CCTyper	CDS	68107	68748	214	+	.	ID=SEQF3309.1|AHRH01000012.1_63_cas;Genome_ID=SEQF3309.1;Feature_type=CDS;Product=Cas Prediction : Cas6e_2_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=2.3e-47;Score=158.7;Coverage_Seq=0.9719626168224299;Coverage_Hmm=0.995049504950495
SEQF3309.1|AHRH01000012.1	CCTyper	CDS	66159	67379	407	+	.	ID=SEQF3309.1|AHRH01000012.1_61_cas;Genome_ID=SEQF3309.1;Feature_type=CDS;Product=Cas Prediction : Cas7_1_CAS-I-E;coding_strand=+;E-value=2.6e-113;Score=375.9;Coverage_Seq=0.9434889434889435;Coverage_Hmm=0.9972144846796658
SEQF3309.1|AHRH01000012.1	CCTyper	CDS	63891	65573	561	+	.	ID=SEQF3309.1|AHRH01000012.1_59_cas;Genome_ID=SEQF3309.1;Feature_type=CDS;Product=Cas Prediction : Cas8e_4_CAS-I-E;coding_strand=+;E-value=1.9e-91;Score=304.1;Coverage_Seq=0.8877005347593583;Coverage_Hmm=0.9935483870967742
SEQF3309.1|AHRH01000019.1	CCTyper	CDS	84032	88069	1346	+	.	ID=SEQF3309.1|AHRH01000019.1_79_cas;Genome_ID=SEQF3309.1;Feature_type=CDS;Product=Cas Prediction : Cas9_1_II;coding_strand=+;E-value=0.0;Score=1275.6;Coverage_Seq=0.9955423476968797;Coverage_Hmm=0.9991071428571429
SEQF3309.1|AHRH01000012.1	CCTyper	CDS	65570	66169	200	+	.	ID=SEQF3309.1|AHRH01000012.1_60_cas;Genome_ID=SEQF3309.1;Feature_type=CDS;Product=Cas Prediction : Cse2gr11_5_CAS-I-E;coding_strand=+;E-value=1.2e-67;Score=224.2;Coverage_Seq=0.95;Coverage_Hmm=0.9748743718592965
SEQF3309.1|AHRH01000019.1	CCTyper	CDS	89266	89928	221	+	.	ID=SEQF3309.1|AHRH01000019.1_82_cas;Genome_ID=SEQF3309.1;Feature_type=CDS;Product=Cas Prediction : Csn2_1_CAS-II-A;coding_strand=+;E-value=9.7e-107;Score=352.3;Coverage_Seq=0.9819004524886877;Coverage_Hmm=0.9954128440366973
SEQF3309.1|AHRH01000012.1	CCTyper	CDS	69693	70595	301	+	.	ID=SEQF3309.1|AHRH01000012.1_65_cas;Genome_ID=SEQF3309.1;Feature_type=CDS;Product=Cas Prediction : DEDDh_0_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=4.6e-35;Score=117.9;Coverage_Seq=0.5116279069767442;Coverage_Hmm=0.98125
SEQF3309.1|AHRH01000012.1	CCTyper	CDS	59939	60922	328	+	.	ID=SEQF3309.1|AHRH01000012.1_57_cas;Genome_ID=SEQF3309.1;Feature_type=CDS;Product=Cas Prediction : WYL_3_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.1e-09;Score=35.3;Coverage_Seq=0.4847560975609756;Coverage_Hmm=0.8895348837209303