SEQF3343.1|AHSC01000004.1	CCTyper	repeat_region	7230	7501	272	+	.	ID=SEQF3343.1|AHSC01000004.1_1;Genome_ID=SEQF3343.1;Note=Predictor:CCtyper;Start:7230;End:7501;Consensus_Repeat:GGATCACCCCCGCTCGTGCGGGTAAAAT;Number_of_Repeats:5;Repeat_Length:28;Average_Spacer_Length:33;Repeat_Identity:97.2;Spacer_Identity:47.9;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:I-E;Subtype_Probability:0.261;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3343.1|AHSC01000004.1	CCTyper	direct_repeat	7230	7257	28	+	.	ID=SEQF3343.1|AHSC01000004.1_1_REPEAT1;Parent=SEQF3343.1|AHSC01000004.1_1;Note=GGATCACCTCCGCTCGTGCGGGTAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3343.1|AHSC01000004.1	CCTyper	binding_site	7258	7290	33	+	.	ID=SEQF3343.1|AHSC01000004.1_1_SPACER1;Parent=SEQF3343.1|AHSC01000004.1_1;Note=TATCATCATTCAAATCATTAATTGTTTCTATTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3343.1|AHSC01000004.1	CCTyper	direct_repeat	7291	7318	28	+	.	ID=SEQF3343.1|AHSC01000004.1_1_REPEAT2;Parent=SEQF3343.1|AHSC01000004.1_1;Note=GGATCACCCCCGCTCGTGCGGGTAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3343.1|AHSC01000004.1	CCTyper	binding_site	7319	7351	33	+	.	ID=SEQF3343.1|AHSC01000004.1_1_SPACER2;Parent=SEQF3343.1|AHSC01000004.1_1;Note=GTTTATATGAGCCAAAAACTAACTGATGAACTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3343.1|AHSC01000004.1	CCTyper	direct_repeat	7352	7379	28	+	.	ID=SEQF3343.1|AHSC01000004.1_1_REPEAT3;Parent=SEQF3343.1|AHSC01000004.1_1;Note=GGATCACCCCCGCTCGTGCGGGTAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3343.1|AHSC01000004.1	CCTyper	binding_site	7380	7412	33	+	.	ID=SEQF3343.1|AHSC01000004.1_1_SPACER3;Parent=SEQF3343.1|AHSC01000004.1_1;Note=AGCAACTTTACCTTTAATATCTTCATAATTATA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3343.1|AHSC01000004.1	CCTyper	direct_repeat	7413	7440	28	+	.	ID=SEQF3343.1|AHSC01000004.1_1_REPEAT4;Parent=SEQF3343.1|AHSC01000004.1_1;Note=GGATCACCCCCGCTCGTGCGGGTAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3343.1|AHSC01000004.1	CCTyper	binding_site	7441	7473	33	+	.	ID=SEQF3343.1|AHSC01000004.1_1_SPACER4;Parent=SEQF3343.1|AHSC01000004.1_1;Note=GGTGTATTTATTAGACTCAAATATCTATATTAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3343.1|AHSC01000004.1	CCTyper	direct_repeat	7474	7501	28	+	.	ID=SEQF3343.1|AHSC01000004.1_1_REPEAT5;Parent=SEQF3343.1|AHSC01000004.1_1;Note=GGATCACCCCCGCTCGTGCGGGTAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3343.1|AHSC01000020.1	CCTyper	OPERON	866	6762	5897	-	.	ID=SEQF3343.1|AHSC01000020.1@1;Genome_ID=SEQF3343.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Csn2_1_CAS-II-A,Cas2_5_CAS-I-II-III-IV-V-VI,Cas1_4_CAS-I-II-III-IV-V-VI,Cas9_1_II;Positions=3,4,5,6;E-values=1.40e-106,1.40e-51,1.80e-103,0.00e+00;CoverageSeq=0.982,0.965,0.931,0.996;CoverageHMM=0.995,0.983,0.996,0.999;Strand_Interference=-1;Strand_Adaptation=-1
SEQF3343.1|AHSC01000004.1	CCTyper	OPERON	7525	18087	10563	-	.	ID=SEQF3343.1|AHSC01000004.1@1;Genome_ID=SEQF3343.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type I-E;Complete_Interference=100%;Complete_Adaptation=50%;Best_type=I-E;Best_score=24.0;Genes=DEDDh_0_CAS-I-II-III-IV-V-VI,Cas1_0_IE,Cas6e_2_CAS-I-II-III-IV-V-VI,Cas5_0_IE,Cas7_1_CAS-I-E,Cse2gr11_5_CAS-I-E,Cas8e_4_CAS-I-E,Cas3_0_CAS-I,WYL_3_CAS-I-II-III-IV-V-VI;Positions=3,4,5,6,7,8,9,10,11;E-values=4.80e-35,4.70e-108,7.70e-47,1.90e-42,3.80e-107,3.40e-70,4.00e-85,6.30e-69,1.20e-09;CoverageSeq=0.512,0.854,0.972,0.862,0.931,0.95,0.897,0.439,0.485;CoverageHMM=0.981,0.993,0.995,0.974,0.997,0.98,0.996,0.986,0.89;Strand_Interference=-1;Strand_Adaptation=-1
SEQF3343.1|AHSC01000012.1	CCTyper	OPERON	37935	40415	2481	-	.	ID=SEQF3343.1|AHSC01000012.1@3;Genome_ID=SEQF3343.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type I-A;Complete_Interference=14%;Complete_Adaptation=33%;Best_type=I-A;Best_score=6.0;Genes=Cas2_8_CAS-I-II-III-IV-V-VI,Csa5_0_IA,Csx1_19_CAS-III;Positions=45,48,50;E-values=3.00e-03,2.90e-03,4.90e-03;CoverageSeq=0.617,0.352,0.429;CoverageHMM=0.366,0.505,0.36;Strand_Interference=-1;Strand_Adaptation=-1
SEQF3343.1|AHSC01000004.1	CCTyper	CDS	8429	9370	314	-	.	ID=SEQF3343.1|AHSC01000004.1_4_cas;Genome_ID=SEQF3343.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_IE;coding_strand=-;E-value=4.7e-108;Score=357.2;Coverage_Seq=0.8535031847133758;Coverage_Hmm=0.9925650557620818
SEQF3343.1|AHSC01000020.1	CCTyper	CDS	1859	2725	289	-	.	ID=SEQF3343.1|AHSC01000020.1_5_cas;Genome_ID=SEQF3343.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.8e-103;Score=342.2;Coverage_Seq=0.9307958477508651;Coverage_Hmm=0.9963636363636363
SEQF3343.1|AHSC01000020.1	CCTyper	CDS	1518	1862	115	-	.	ID=SEQF3343.1|AHSC01000020.1_4_cas;Genome_ID=SEQF3343.1;Feature_type=CDS;Product=Cas Prediction : Cas2_5_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.4e-51;Score=170.4;Coverage_Seq=0.9652173913043478;Coverage_Hmm=0.9827586206896551
SEQF3343.1|AHSC01000012.1	CCTyper	CDS	37935	38114	60	-	.	ID=SEQF3343.1|AHSC01000012.1_45_cas;Genome_ID=SEQF3343.1;Feature_type=CDS;Product=Cas Prediction : Cas2_8_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=0.003;Score=14.3;Coverage_Seq=0.6166666666666667;Coverage_Hmm=0.36633663366336633
SEQF3343.1|AHSC01000004.1	CCTyper	CDS	14128	16914	929	-	.	ID=SEQF3343.1|AHSC01000004.1_10_cas;Genome_ID=SEQF3343.1;Feature_type=CDS;Product=Cas Prediction : Cas3_0_CAS-I;coding_strand=-;E-value=6.299999999999999e-69;Score=229.5;Coverage_Seq=0.43918191603875134;Coverage_Hmm=0.9858356940509915
SEQF3343.1|AHSC01000004.1	CCTyper	CDS	10020	10736	239	-	.	ID=SEQF3343.1|AHSC01000004.1_6_cas;Genome_ID=SEQF3343.1;Feature_type=CDS;Product=Cas Prediction : Cas5_0_IE;coding_strand=-;E-value=1.9e-42;Score=142.3;Coverage_Seq=0.8619246861924686;Coverage_Hmm=0.9739130434782609
SEQF3343.1|AHSC01000004.1	CCTyper	CDS	9373	10014	214	-	.	ID=SEQF3343.1|AHSC01000004.1_5_cas;Genome_ID=SEQF3343.1;Feature_type=CDS;Product=Cas Prediction : Cas6e_2_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=7.7e-47;Score=157.0;Coverage_Seq=0.9719626168224299;Coverage_Hmm=0.995049504950495
SEQF3343.1|AHSC01000004.1	CCTyper	CDS	10742	11821	360	-	.	ID=SEQF3343.1|AHSC01000004.1_7_cas;Genome_ID=SEQF3343.1;Feature_type=CDS;Product=Cas Prediction : Cas7_1_CAS-I-E;coding_strand=-;E-value=3.7999999999999996e-107;Score=355.6;Coverage_Seq=0.9305555555555556;Coverage_Hmm=0.9972144846796658
SEQF3343.1|AHSC01000004.1	CCTyper	CDS	12417	14135	573	-	.	ID=SEQF3343.1|AHSC01000004.1_9_cas;Genome_ID=SEQF3343.1;Feature_type=CDS;Product=Cas Prediction : Cas8e_4_CAS-I-E;coding_strand=-;E-value=4e-85;Score=283.3;Coverage_Seq=0.8970331588132635;Coverage_Hmm=0.9956989247311828
SEQF3343.1|AHSC01000020.1	CCTyper	CDS	2725	6762	1346	-	.	ID=SEQF3343.1|AHSC01000020.1_6_cas;Genome_ID=SEQF3343.1;Feature_type=CDS;Product=Cas Prediction : Cas9_1_II;coding_strand=-;E-value=0.0;Score=1274.6;Coverage_Seq=0.9955423476968797;Coverage_Hmm=0.9991071428571429
SEQF3343.1|AHSC01000012.1	CCTyper	CDS	38783	39328	182	-	.	ID=SEQF3343.1|AHSC01000012.1_48_cas;Genome_ID=SEQF3343.1;Feature_type=CDS;Product=Cas Prediction : Csa5_0_IA;coding_strand=-;E-value=0.0029;Score=14.6;Coverage_Seq=0.3516483516483517;Coverage_Hmm=0.5046728971962616
SEQF3343.1|AHSC01000004.1	CCTyper	CDS	11805	12407	201	-	.	ID=SEQF3343.1|AHSC01000004.1_8_cas;Genome_ID=SEQF3343.1;Feature_type=CDS;Product=Cas Prediction : Cse2gr11_5_CAS-I-E;coding_strand=-;E-value=3.4e-70;Score=232.5;Coverage_Seq=0.9502487562189055;Coverage_Hmm=0.9798994974874372
SEQF3343.1|AHSC01000020.1	CCTyper	CDS	866	1528	221	-	.	ID=SEQF3343.1|AHSC01000020.1_3_cas;Genome_ID=SEQF3343.1;Feature_type=CDS;Product=Cas Prediction : Csn2_1_CAS-II-A;coding_strand=-;E-value=1.4e-106;Score=351.8;Coverage_Seq=0.9819004524886877;Coverage_Hmm=0.9954128440366973
SEQF3343.1|AHSC01000012.1	CCTyper	CDS	39660	40415	252	-	.	ID=SEQF3343.1|AHSC01000012.1_50_cas;Genome_ID=SEQF3343.1;Feature_type=CDS;Product=Cas Prediction : Csx1_19_CAS-III;coding_strand=-;E-value=0.0049;Score=13.4;Coverage_Seq=0.42857142857142855;Coverage_Hmm=0.36018957345971564
SEQF3343.1|AHSC01000004.1	CCTyper	CDS	7525	8427	301	-	.	ID=SEQF3343.1|AHSC01000004.1_3_cas;Genome_ID=SEQF3343.1;Feature_type=CDS;Product=Cas Prediction : DEDDh_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=4.7999999999999997e-35;Score=117.9;Coverage_Seq=0.5116279069767442;Coverage_Hmm=0.98125
SEQF3343.1|AHSC01000004.1	CCTyper	CDS	17104	18087	328	-	.	ID=SEQF3343.1|AHSC01000004.1_11_cas;Genome_ID=SEQF3343.1;Feature_type=CDS;Product=Cas Prediction : WYL_3_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.2e-09;Score=35.3;Coverage_Seq=0.4847560975609756;Coverage_Hmm=0.8895348837209303