SEQF3375.1|ALYS01000040.1	CCTyper	repeat_region	1	211	211	+	.	ID=SEQF3375.1|ALYS01000040.1_1;Genome_ID=SEQF3375.1;Note=Predictor:CCtyper;Start:1;End:211;Consensus_Repeat:GGATCACCCCCGCTCGTGCGGGTAAAAT;Number_of_Repeats:4;Repeat_Length:28;Average_Spacer_Length:33;Repeat_Identity:96.6;Spacer_Identity:44.6;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:I-E;Subtype_Probability:0.261;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3375.1|ALYS01000040.1	CCTyper	direct_repeat	1	28	28	+	.	ID=SEQF3375.1|ALYS01000040.1_1_REPEAT1;Parent=SEQF3375.1|ALYS01000040.1_1;Note=GGATCACCCCCGCTCGTGCGGGTAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3375.1|ALYS01000040.1	CCTyper	binding_site	29	61	33	+	.	ID=SEQF3375.1|ALYS01000040.1_1_SPACER1;Parent=SEQF3375.1|ALYS01000040.1_1;Note=CGATTGTCAGTCTCAGGGCTATCGTTGCCGTCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3375.1|ALYS01000040.1	CCTyper	direct_repeat	62	89	28	+	.	ID=SEQF3375.1|ALYS01000040.1_1_REPEAT2;Parent=SEQF3375.1|ALYS01000040.1_1;Note=GGATCACCCCCGCTCATGCGGGTAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3375.1|ALYS01000040.1	CCTyper	binding_site	90	122	33	+	.	ID=SEQF3375.1|ALYS01000040.1_1_SPACER2;Parent=SEQF3375.1|ALYS01000040.1_1;Note=TTATTGAAGCATTTGAAAATAGGGTACGTTCTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3375.1|ALYS01000040.1	CCTyper	direct_repeat	123	150	28	+	.	ID=SEQF3375.1|ALYS01000040.1_1_REPEAT3;Parent=SEQF3375.1|ALYS01000040.1_1;Note=GGATCACCCCCGCTCGTGCGGGTAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3375.1|ALYS01000040.1	CCTyper	binding_site	151	183	33	+	.	ID=SEQF3375.1|ALYS01000040.1_1_SPACER3;Parent=SEQF3375.1|ALYS01000040.1_1;Note=TTTATTTTTAATACCTTGTCCGGCTGGCTGTTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3375.1|ALYS01000040.1	CCTyper	direct_repeat	184	211	28	+	.	ID=SEQF3375.1|ALYS01000040.1_1_REPEAT4;Parent=SEQF3375.1|ALYS01000040.1_1;Note=GGATCACCCCCGCTCGTGCGGGTAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3375.1|ALYS01000040.1	CCTyper	OPERON	235	10797	10563	-	.	ID=SEQF3375.1|ALYS01000040.1@1;Genome_ID=SEQF3375.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type I-E;Complete_Interference=100%;Complete_Adaptation=50%;Best_type=I-E;Best_score=24.0;Genes=DEDDh_0_CAS-I-II-III-IV-V-VI,Cas1_0_IE,Cas6e_2_CAS-I-II-III-IV-V-VI,Cas5_0_IE,Cas7_1_CAS-I-E,Cse2gr11_5_CAS-I-E,Cas8e_4_CAS-I-E,Cas3_0_CAS-I,WYL_3_CAS-I-II-III-IV-V-VI;Positions=1,2,3,4,5,6,7,8,9;E-values=8.30e-36,4.90e-108,8.00e-47,2.00e-42,3.90e-107,3.50e-70,9.10e-85,5.80e-70,1.20e-09;CoverageSeq=0.512,0.854,0.972,0.862,0.931,0.95,0.897,0.439,0.485;CoverageHMM=0.981,0.993,0.995,0.974,0.997,0.98,0.996,0.986,0.89;Strand_Interference=-1;Strand_Adaptation=-1
SEQF3375.1|ALYS01000040.1	CCTyper	CDS	1139	2080	314	-	.	ID=SEQF3375.1|ALYS01000040.1_2_cas;Genome_ID=SEQF3375.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_IE;coding_strand=-;E-value=4.9e-108;Score=357.2;Coverage_Seq=0.8535031847133758;Coverage_Hmm=0.9925650557620818
SEQF3375.1|ALYS01000040.1	CCTyper	CDS	6838	9624	929	-	.	ID=SEQF3375.1|ALYS01000040.1_8_cas;Genome_ID=SEQF3375.1;Feature_type=CDS;Product=Cas Prediction : Cas3_0_CAS-I;coding_strand=-;E-value=5.8e-70;Score=233.0;Coverage_Seq=0.43918191603875134;Coverage_Hmm=0.9858356940509915
SEQF3375.1|ALYS01000040.1	CCTyper	CDS	2730	3446	239	-	.	ID=SEQF3375.1|ALYS01000040.1_4_cas;Genome_ID=SEQF3375.1;Feature_type=CDS;Product=Cas Prediction : Cas5_0_IE;coding_strand=-;E-value=1.9999999999999998e-42;Score=142.3;Coverage_Seq=0.8619246861924686;Coverage_Hmm=0.9739130434782609
SEQF3375.1|ALYS01000040.1	CCTyper	CDS	2083	2724	214	-	.	ID=SEQF3375.1|ALYS01000040.1_3_cas;Genome_ID=SEQF3375.1;Feature_type=CDS;Product=Cas Prediction : Cas6e_2_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=8e-47;Score=157.0;Coverage_Seq=0.9719626168224299;Coverage_Hmm=0.995049504950495
SEQF3375.1|ALYS01000040.1	CCTyper	CDS	3452	4531	360	-	.	ID=SEQF3375.1|ALYS01000040.1_5_cas;Genome_ID=SEQF3375.1;Feature_type=CDS;Product=Cas Prediction : Cas7_1_CAS-I-E;coding_strand=-;E-value=3.9e-107;Score=355.6;Coverage_Seq=0.9305555555555556;Coverage_Hmm=0.9972144846796658
SEQF3375.1|ALYS01000040.1	CCTyper	CDS	5127	6845	573	-	.	ID=SEQF3375.1|ALYS01000040.1_7_cas;Genome_ID=SEQF3375.1;Feature_type=CDS;Product=Cas Prediction : Cas8e_4_CAS-I-E;coding_strand=-;E-value=9.1e-85;Score=282.2;Coverage_Seq=0.8970331588132635;Coverage_Hmm=0.9956989247311828
SEQF3375.1|ALYS01000040.1	CCTyper	CDS	4515	5117	201	-	.	ID=SEQF3375.1|ALYS01000040.1_6_cas;Genome_ID=SEQF3375.1;Feature_type=CDS;Product=Cas Prediction : Cse2gr11_5_CAS-I-E;coding_strand=-;E-value=3.5e-70;Score=232.5;Coverage_Seq=0.9502487562189055;Coverage_Hmm=0.9798994974874372
SEQF3375.1|ALYS01000040.1	CCTyper	CDS	235	1137	301	-	.	ID=SEQF3375.1|ALYS01000040.1_1_cas;Genome_ID=SEQF3375.1;Feature_type=CDS;Product=Cas Prediction : DEDDh_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=8.3e-36;Score=120.4;Coverage_Seq=0.5116279069767442;Coverage_Hmm=0.98125
SEQF3375.1|ALYS01000040.1	CCTyper	CDS	9814	10797	328	-	.	ID=SEQF3375.1|ALYS01000040.1_9_cas;Genome_ID=SEQF3375.1;Feature_type=CDS;Product=Cas Prediction : WYL_3_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.2e-09;Score=35.3;Coverage_Seq=0.4847560975609756;Coverage_Hmm=0.8895348837209303