SEQF3380.1|ALYX01000034.1	CCTyper	repeat_region	34566	34931	366	+	.	ID=SEQF3380.1|ALYX01000034.1_1;Genome_ID=SEQF3380.1;Note=Predictor:CCtyper;Start:34566;End:34931;Consensus_Repeat:GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Number_of_Repeats:6;Repeat_Length:36;Average_Spacer_Length:30;Repeat_Identity:98.2;Spacer_Identity:43.0;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:II-A;Subtype_Probability:0.549;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3380.1|ALYX01000034.1	CCTyper	direct_repeat	34566	34601	36	+	.	ID=SEQF3380.1|ALYX01000034.1_1_REPEAT1;Parent=SEQF3380.1|ALYX01000034.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3380.1|ALYX01000034.1	CCTyper	binding_site	34602	34631	30	+	.	ID=SEQF3380.1|ALYX01000034.1_1_SPACER1;Parent=SEQF3380.1|ALYX01000034.1_1;Note=AATGTGGGGTACTAAGACCGCAAACCTAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3380.1|ALYX01000034.1	CCTyper	direct_repeat	34632	34667	36	+	.	ID=SEQF3380.1|ALYX01000034.1_1_REPEAT2;Parent=SEQF3380.1|ALYX01000034.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3380.1|ALYX01000034.1	CCTyper	binding_site	34668	34697	30	+	.	ID=SEQF3380.1|ALYX01000034.1_1_SPACER2;Parent=SEQF3380.1|ALYX01000034.1_1;Note=CACTAATACTGCTAAAACTCGTGCAGATGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3380.1|ALYX01000034.1	CCTyper	direct_repeat	34698	34733	36	+	.	ID=SEQF3380.1|ALYX01000034.1_1_REPEAT3;Parent=SEQF3380.1|ALYX01000034.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3380.1|ALYX01000034.1	CCTyper	binding_site	34734	34763	30	+	.	ID=SEQF3380.1|ALYX01000034.1_1_SPACER3;Parent=SEQF3380.1|ALYX01000034.1_1;Note=TACAACCAAACACAGGAGACAACCACCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3380.1|ALYX01000034.1	CCTyper	direct_repeat	34764	34799	36	+	.	ID=SEQF3380.1|ALYX01000034.1_1_REPEAT4;Parent=SEQF3380.1|ALYX01000034.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3380.1|ALYX01000034.1	CCTyper	binding_site	34800	34829	30	+	.	ID=SEQF3380.1|ALYX01000034.1_1_SPACER4;Parent=SEQF3380.1|ALYX01000034.1_1;Note=TTGATTTCTGTCAAAGTCTCTGAGTAATCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3380.1|ALYX01000034.1	CCTyper	direct_repeat	34830	34865	36	+	.	ID=SEQF3380.1|ALYX01000034.1_1_REPEAT5;Parent=SEQF3380.1|ALYX01000034.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3380.1|ALYX01000034.1	CCTyper	binding_site	34866	34895	30	+	.	ID=SEQF3380.1|ALYX01000034.1_1_SPACER5;Parent=SEQF3380.1|ALYX01000034.1_1;Note=GCAGATTATGACTTAGAACGAGCGCAAAAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3380.1|ALYX01000034.1	CCTyper	direct_repeat	34896	34931	36	+	.	ID=SEQF3380.1|ALYX01000034.1_1_REPEAT6;Parent=SEQF3380.1|ALYX01000034.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3380.1|ALYX01000034.1	CCTyper	OPERON	27803	36573	8771	+	.	ID=SEQF3380.1|ALYX01000034.1@1;Genome_ID=SEQF3380.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Cas9_1_II,Cas1_4_CAS-I-II-III-IV-V-VI,Cas2_5_CAS-I-II-III-IV-V-VI,Csn2_1_CAS-II-A,Csa5gr11_3_CAS-I-A;Positions=24,25,26,27,31;E-values=0.00e+00,1.10e-102,1.60e-51,1.10e-106,1.90e-03;CoverageSeq=0.996,0.931,0.965,0.982,0.663;CoverageHMM=0.999,0.996,0.983,0.995,0.389;Strand_Interference=1;Strand_Adaptation=1
SEQF3380.1|ALYX01000034.1	CCTyper	CDS	31870	32736	289	+	.	ID=SEQF3380.1|ALYX01000034.1_25_cas;Genome_ID=SEQF3380.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.1e-102;Score=339.8;Coverage_Seq=0.9307958477508651;Coverage_Hmm=0.9963636363636363
SEQF3380.1|ALYX01000034.1	CCTyper	CDS	32733	33077	115	+	.	ID=SEQF3380.1|ALYX01000034.1_26_cas;Genome_ID=SEQF3380.1;Feature_type=CDS;Product=Cas Prediction : Cas2_5_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.6e-51;Score=170.4;Coverage_Seq=0.9652173913043478;Coverage_Hmm=0.9827586206896551
SEQF3380.1|ALYX01000034.1	CCTyper	CDS	27803	31870	1356	+	.	ID=SEQF3380.1|ALYX01000034.1_24_cas;Genome_ID=SEQF3380.1;Feature_type=CDS;Product=Cas Prediction : Cas9_1_II;coding_strand=+;E-value=0.0;Score=1108.1;Coverage_Seq=0.995575221238938;Coverage_Hmm=0.9991071428571429
SEQF3380.1|ALYX01000034.1	CCTyper	CDS	36289	36573	95	+	.	ID=SEQF3380.1|ALYX01000034.1_31_cas;Genome_ID=SEQF3380.1;Feature_type=CDS;Product=Cas Prediction : Csa5gr11_3_CAS-I-A;coding_strand=+;E-value=0.0019;Score=15.4;Coverage_Seq=0.6631578947368421;Coverage_Hmm=0.3888888888888889
SEQF3380.1|ALYX01000034.1	CCTyper	CDS	33067	33729	221	+	.	ID=SEQF3380.1|ALYX01000034.1_27_cas;Genome_ID=SEQF3380.1;Feature_type=CDS;Product=Cas Prediction : Csn2_1_CAS-II-A;coding_strand=+;E-value=1.1e-106;Score=352.3;Coverage_Seq=0.9819004524886877;Coverage_Hmm=0.9954128440366973