SEQF3393.1|JWGS01000036.1	CCTyper	repeat_region	12436	12830	395	+	.	ID=SEQF3393.1|JWGS01000036.1_1;Genome_ID=SEQF3393.1;Note=Predictor:CCtyper;Start:12436;End:12830;Consensus_Repeat:ATTTTACCCGCACGAGCGGGGGTGATCCT;Number_of_Repeats:7;Repeat_Length:29;Average_Spacer_Length:32;Repeat_Identity:98.1;Spacer_Identity:39.9;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:I-E;Subtype_Probability:0.288;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	direct_repeat	12436	12464	29	+	.	ID=SEQF3393.1|JWGS01000036.1_1_REPEAT1;Parent=SEQF3393.1|JWGS01000036.1_1;Note=ATTTTACCCGCACGAGCGGGGGTGATCCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	binding_site	12465	12496	32	+	.	ID=SEQF3393.1|JWGS01000036.1_1_SPACER1;Parent=SEQF3393.1|JWGS01000036.1_1;Note=GAAGCATACTTTGAATTTCCATTTTTGAAACG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	direct_repeat	12497	12525	29	+	.	ID=SEQF3393.1|JWGS01000036.1_1_REPEAT2;Parent=SEQF3393.1|JWGS01000036.1_1;Note=ATTTTACCCGCACGAGCGGGGGTGATCCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	binding_site	12526	12557	32	+	.	ID=SEQF3393.1|JWGS01000036.1_1_SPACER2;Parent=SEQF3393.1|JWGS01000036.1_1;Note=AGAACGTACCCTATTTTCAAATGCTTCAATAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	direct_repeat	12558	12586	29	+	.	ID=SEQF3393.1|JWGS01000036.1_1_REPEAT3;Parent=SEQF3393.1|JWGS01000036.1_1;Note=ATTTTACCCGCACGAGCGGGGGTGATCCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	binding_site	12587	12618	32	+	.	ID=SEQF3393.1|JWGS01000036.1_1_SPACER3;Parent=SEQF3393.1|JWGS01000036.1_1;Note=GGAATACAAAAACGACAATAGCAAAAACGCAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	direct_repeat	12619	12647	29	+	.	ID=SEQF3393.1|JWGS01000036.1_1_REPEAT4;Parent=SEQF3393.1|JWGS01000036.1_1;Note=ATTTTACCCGCACGAGCGGGGGTGATCCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	binding_site	12648	12679	32	+	.	ID=SEQF3393.1|JWGS01000036.1_1_SPACER4;Parent=SEQF3393.1|JWGS01000036.1_1;Note=GACGGCAACGATAGCCCTGAGACTGACAATCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	direct_repeat	12680	12708	29	+	.	ID=SEQF3393.1|JWGS01000036.1_1_REPEAT5;Parent=SEQF3393.1|JWGS01000036.1_1;Note=ATTTTACCCGCACGAGCGGGGGTGATCCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	binding_site	12709	12740	32	+	.	ID=SEQF3393.1|JWGS01000036.1_1_SPACER5;Parent=SEQF3393.1|JWGS01000036.1_1;Note=TTCAGGTTAGAGAACTTTTCAAAAGCTTCTTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	direct_repeat	12741	12769	29	+	.	ID=SEQF3393.1|JWGS01000036.1_1_REPEAT6;Parent=SEQF3393.1|JWGS01000036.1_1;Note=ATTTTACCCGCACGAGCGGGGGTGATCCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	binding_site	12770	12801	32	+	.	ID=SEQF3393.1|JWGS01000036.1_1_SPACER6;Parent=SEQF3393.1|JWGS01000036.1_1;Note=GTTTTCCTACCTCTTACCAAGGTTTTTTCTAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	direct_repeat	12802	12830	29	+	.	ID=SEQF3393.1|JWGS01000036.1_1_REPEAT7;Parent=SEQF3393.1|JWGS01000036.1_1;Note=ATTTTACCCGCACGAGCGGGGGTGATCCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	repeat_region	114272	115099	828	+	.	ID=SEQF3393.1|JWGS01000036.1_2;Genome_ID=SEQF3393.1;Note=Predictor:CCtyper;Start:114272;End:115099;Consensus_Repeat:GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAT;Number_of_Repeats:13;Repeat_Length:36;Average_Spacer_Length:30;Repeat_Identity:100.0;Spacer_Identity:40.7;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: II-C;Cas_Subtype_Prediction:II-C;Subtype_Probability:0.791;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	direct_repeat	114272	114307	36	+	.	ID=SEQF3393.1|JWGS01000036.1_2_REPEAT1;Parent=SEQF3393.1|JWGS01000036.1_2;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	binding_site	114308	114337	30	+	.	ID=SEQF3393.1|JWGS01000036.1_2_SPACER1;Parent=SEQF3393.1|JWGS01000036.1_2;Note=TGGCATGCAAAAGCTAGTTTCAAAAGCTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	direct_repeat	114338	114373	36	+	.	ID=SEQF3393.1|JWGS01000036.1_2_REPEAT2;Parent=SEQF3393.1|JWGS01000036.1_2;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	binding_site	114374	114403	30	+	.	ID=SEQF3393.1|JWGS01000036.1_2_SPACER2;Parent=SEQF3393.1|JWGS01000036.1_2;Note=AGATGAGGTTGGAGAACTTAAAACTGATGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	direct_repeat	114404	114439	36	+	.	ID=SEQF3393.1|JWGS01000036.1_2_REPEAT3;Parent=SEQF3393.1|JWGS01000036.1_2;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	binding_site	114440	114469	30	+	.	ID=SEQF3393.1|JWGS01000036.1_2_SPACER3;Parent=SEQF3393.1|JWGS01000036.1_2;Note=TAGCAATGACAGAATTAGCATGTATTCGGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	direct_repeat	114470	114505	36	+	.	ID=SEQF3393.1|JWGS01000036.1_2_REPEAT4;Parent=SEQF3393.1|JWGS01000036.1_2;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	binding_site	114506	114535	30	+	.	ID=SEQF3393.1|JWGS01000036.1_2_SPACER4;Parent=SEQF3393.1|JWGS01000036.1_2;Note=ATTCTTTTTCAGCGAACGTCTGATAAGTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	direct_repeat	114536	114571	36	+	.	ID=SEQF3393.1|JWGS01000036.1_2_REPEAT5;Parent=SEQF3393.1|JWGS01000036.1_2;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	binding_site	114572	114601	30	+	.	ID=SEQF3393.1|JWGS01000036.1_2_SPACER5;Parent=SEQF3393.1|JWGS01000036.1_2;Note=TACTGTTGCGGTATTAAAAAGGTACTGTTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	direct_repeat	114602	114637	36	+	.	ID=SEQF3393.1|JWGS01000036.1_2_REPEAT6;Parent=SEQF3393.1|JWGS01000036.1_2;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	binding_site	114638	114667	30	+	.	ID=SEQF3393.1|JWGS01000036.1_2_SPACER6;Parent=SEQF3393.1|JWGS01000036.1_2;Note=ATAGATTTAGGGAAAATCCCAGAGAGTTTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	direct_repeat	114668	114703	36	+	.	ID=SEQF3393.1|JWGS01000036.1_2_REPEAT7;Parent=SEQF3393.1|JWGS01000036.1_2;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	binding_site	114704	114733	30	+	.	ID=SEQF3393.1|JWGS01000036.1_2_SPACER7;Parent=SEQF3393.1|JWGS01000036.1_2;Note=GTTGAATTGATTTTCGTTATCTCTGTCCGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	direct_repeat	114734	114769	36	+	.	ID=SEQF3393.1|JWGS01000036.1_2_REPEAT8;Parent=SEQF3393.1|JWGS01000036.1_2;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	binding_site	114770	114799	30	+	.	ID=SEQF3393.1|JWGS01000036.1_2_SPACER8;Parent=SEQF3393.1|JWGS01000036.1_2;Note=AGGTCGTGGTGTTGATACTGACCAAAAGTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	direct_repeat	114800	114835	36	+	.	ID=SEQF3393.1|JWGS01000036.1_2_REPEAT9;Parent=SEQF3393.1|JWGS01000036.1_2;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	binding_site	114836	114865	30	+	.	ID=SEQF3393.1|JWGS01000036.1_2_SPACER9;Parent=SEQF3393.1|JWGS01000036.1_2;Note=TACCATCTGCCTTCAAAAGACTGACAACAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	direct_repeat	114866	114901	36	+	.	ID=SEQF3393.1|JWGS01000036.1_2_REPEAT10;Parent=SEQF3393.1|JWGS01000036.1_2;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	binding_site	114902	114931	30	+	.	ID=SEQF3393.1|JWGS01000036.1_2_SPACER10;Parent=SEQF3393.1|JWGS01000036.1_2;Note=CTTTATTTTGCTTTTTTATAAAAATTTCGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	direct_repeat	114932	114967	36	+	.	ID=SEQF3393.1|JWGS01000036.1_2_REPEAT11;Parent=SEQF3393.1|JWGS01000036.1_2;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	binding_site	114968	114997	30	+	.	ID=SEQF3393.1|JWGS01000036.1_2_SPACER11;Parent=SEQF3393.1|JWGS01000036.1_2;Note=AAATAAAAACCCTACAAACTTAATGCTTGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	direct_repeat	114998	115033	36	+	.	ID=SEQF3393.1|JWGS01000036.1_2_REPEAT12;Parent=SEQF3393.1|JWGS01000036.1_2;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	binding_site	115034	115063	30	+	.	ID=SEQF3393.1|JWGS01000036.1_2_SPACER12;Parent=SEQF3393.1|JWGS01000036.1_2;Note=TTGAAGGGTTCTTTCCTTGGAACCTTTGCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	direct_repeat	115064	115099	36	+	.	ID=SEQF3393.1|JWGS01000036.1_2_REPEAT13;Parent=SEQF3393.1|JWGS01000036.1_2;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3393.1|JWGS01000036.1	CCTyper	OPERON	1852	12412	10561	+	.	ID=SEQF3393.1|JWGS01000036.1@1;Genome_ID=SEQF3393.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type I-E;Complete_Interference=100%;Complete_Adaptation=50%;Best_type=I-E;Best_score=24.0;Genes=WYL_3_CAS-I-II-III-IV-V-VI,Cas3_0_CAS-I,Cas8e_4_CAS-I-E,Cse2gr11_5_CAS-I-E,Cas7_1_CAS-I-E,Cas5_0_IE,Cas6e_2_CAS-I-II-III-IV-V-VI,Cas1_0_IE,DEDDh_0_CAS-I-II-III-IV-V-VI;Positions=4,5,6,7,8,9,10,12,13;E-values=1.20e-09,5.70e-70,9.00e-85,3.40e-70,1.40e-107,6.30e-42,7.80e-47,3.50e-62,8.20e-36;CoverageSeq=0.485,0.439,0.897,0.95,0.931,0.862,0.972,0.821,0.512;CoverageHMM=0.89,0.986,0.996,0.98,0.997,0.974,0.995,0.572,0.981;Strand_Interference=1;Strand_Adaptation=1
SEQF3393.1|JWGS01000036.1	CCTyper	OPERON	107539	116741	9203	+	.	ID=SEQF3393.1|JWGS01000036.1@4;Genome_ID=SEQF3393.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Cas9_1_II,Cas1_4_CAS-I-II-III-IV-V-VI,Cas2_5_CAS-I-II-III-IV-V-VI,Csn2_1_CAS-II-A,Csa5gr11_3_CAS-I-A;Positions=97,98,99,100,104;E-values=0.00e+00,2.30e-103,1.90e-51,1.00e-106,1.70e-03;CoverageSeq=0.996,0.931,0.965,0.982,0.663;CoverageHMM=0.999,0.996,0.983,0.995,0.389;Strand_Interference=1;Strand_Adaptation=1
SEQF3393.1|JWGS01000036.1	CCTyper	CDS	10939	11508	190	+	.	ID=SEQF3393.1|JWGS01000036.1_12_cas;Genome_ID=SEQF3393.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_IE;coding_strand=+;E-value=3.4999999999999997e-62;Score=206.8;Coverage_Seq=0.8210526315789474;Coverage_Hmm=0.5724907063197026
SEQF3393.1|JWGS01000036.1	CCTyper	CDS	111576	112442	289	+	.	ID=SEQF3393.1|JWGS01000036.1_98_cas;Genome_ID=SEQF3393.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=2.3e-103;Score=342.0;Coverage_Seq=0.9307958477508651;Coverage_Hmm=0.9963636363636363
SEQF3393.1|JWGS01000036.1	CCTyper	CDS	112439	112783	115	+	.	ID=SEQF3393.1|JWGS01000036.1_99_cas;Genome_ID=SEQF3393.1;Feature_type=CDS;Product=Cas Prediction : Cas2_5_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.9e-51;Score=170.0;Coverage_Seq=0.9652173913043478;Coverage_Hmm=0.9827586206896551
SEQF3393.1|JWGS01000036.1	CCTyper	CDS	3025	5811	929	+	.	ID=SEQF3393.1|JWGS01000036.1_5_cas;Genome_ID=SEQF3393.1;Feature_type=CDS;Product=Cas Prediction : Cas3_0_CAS-I;coding_strand=+;E-value=5.6999999999999996e-70;Score=233.0;Coverage_Seq=0.43918191603875134;Coverage_Hmm=0.9858356940509915
SEQF3393.1|JWGS01000036.1	CCTyper	CDS	9203	9919	239	+	.	ID=SEQF3393.1|JWGS01000036.1_9_cas;Genome_ID=SEQF3393.1;Feature_type=CDS;Product=Cas Prediction : Cas5_0_IE;coding_strand=+;E-value=6.3e-42;Score=140.6;Coverage_Seq=0.8619246861924686;Coverage_Hmm=0.9739130434782609
SEQF3393.1|JWGS01000036.1	CCTyper	CDS	9925	10566	214	+	.	ID=SEQF3393.1|JWGS01000036.1_10_cas;Genome_ID=SEQF3393.1;Feature_type=CDS;Product=Cas Prediction : Cas6e_2_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=7.8e-47;Score=157.0;Coverage_Seq=0.9719626168224299;Coverage_Hmm=0.995049504950495
SEQF3393.1|JWGS01000036.1	CCTyper	CDS	8118	9197	360	+	.	ID=SEQF3393.1|JWGS01000036.1_8_cas;Genome_ID=SEQF3393.1;Feature_type=CDS;Product=Cas Prediction : Cas7_1_CAS-I-E;coding_strand=+;E-value=1.4e-107;Score=357.0;Coverage_Seq=0.9305555555555556;Coverage_Hmm=0.9972144846796658
SEQF3393.1|JWGS01000036.1	CCTyper	CDS	5804	7522	573	+	.	ID=SEQF3393.1|JWGS01000036.1_6_cas;Genome_ID=SEQF3393.1;Feature_type=CDS;Product=Cas Prediction : Cas8e_4_CAS-I-E;coding_strand=+;E-value=9e-85;Score=282.2;Coverage_Seq=0.8970331588132635;Coverage_Hmm=0.9956989247311828
SEQF3393.1|JWGS01000036.1	CCTyper	CDS	107539	111576	1346	+	.	ID=SEQF3393.1|JWGS01000036.1_97_cas;Genome_ID=SEQF3393.1;Feature_type=CDS;Product=Cas Prediction : Cas9_1_II;coding_strand=+;E-value=0.0;Score=1271.1;Coverage_Seq=0.9955423476968797;Coverage_Hmm=0.9991071428571429
SEQF3393.1|JWGS01000036.1	CCTyper	CDS	116457	116741	95	+	.	ID=SEQF3393.1|JWGS01000036.1_104_cas;Genome_ID=SEQF3393.1;Feature_type=CDS;Product=Cas Prediction : Csa5gr11_3_CAS-I-A;coding_strand=+;E-value=0.0017;Score=15.4;Coverage_Seq=0.6631578947368421;Coverage_Hmm=0.3888888888888889
SEQF3393.1|JWGS01000036.1	CCTyper	CDS	7532	8134	201	+	.	ID=SEQF3393.1|JWGS01000036.1_7_cas;Genome_ID=SEQF3393.1;Feature_type=CDS;Product=Cas Prediction : Cse2gr11_5_CAS-I-E;coding_strand=+;E-value=3.4e-70;Score=232.5;Coverage_Seq=0.9502487562189055;Coverage_Hmm=0.9798994974874372
SEQF3393.1|JWGS01000036.1	CCTyper	CDS	112773	113435	221	+	.	ID=SEQF3393.1|JWGS01000036.1_100_cas;Genome_ID=SEQF3393.1;Feature_type=CDS;Product=Cas Prediction : Csn2_1_CAS-II-A;coding_strand=+;E-value=1e-106;Score=352.3;Coverage_Seq=0.9819004524886877;Coverage_Hmm=0.9954128440366973
SEQF3393.1|JWGS01000036.1	CCTyper	CDS	11510	12412	301	+	.	ID=SEQF3393.1|JWGS01000036.1_13_cas;Genome_ID=SEQF3393.1;Feature_type=CDS;Product=Cas Prediction : DEDDh_0_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=8.2e-36;Score=120.4;Coverage_Seq=0.5116279069767442;Coverage_Hmm=0.98125
SEQF3393.1|JWGS01000036.1	CCTyper	CDS	1852	2835	328	+	.	ID=SEQF3393.1|JWGS01000036.1_4_cas;Genome_ID=SEQF3393.1;Feature_type=CDS;Product=Cas Prediction : WYL_3_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.2e-09;Score=35.3;Coverage_Seq=0.4847560975609756;Coverage_Hmm=0.8895348837209303