SEQF3397.1|LGAC01000028.1	CCTyper	repeat_region	23123	23488	366	+	.	ID=SEQF3397.1|LGAC01000028.1_1;Genome_ID=SEQF3397.1;Note=Predictor:CCtyper;Start:23123;End:23488;Consensus_Repeat:GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Number_of_Repeats:6;Repeat_Length:36;Average_Spacer_Length:30;Repeat_Identity:100.0;Spacer_Identity:40.4;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: II-C;Cas_Subtype_Prediction:II-C;Subtype_Probability:0.946;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3397.1|LGAC01000028.1	CCTyper	direct_repeat	23123	23158	36	+	.	ID=SEQF3397.1|LGAC01000028.1_1_REPEAT1;Parent=SEQF3397.1|LGAC01000028.1_1;Note=GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3397.1|LGAC01000028.1	CCTyper	binding_site	23159	23188	30	+	.	ID=SEQF3397.1|LGAC01000028.1_1_SPACER1;Parent=SEQF3397.1|LGAC01000028.1_1;Note=TACCTTTGAGTTACTTTGTAACTCCCTTTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3397.1|LGAC01000028.1	CCTyper	direct_repeat	23189	23224	36	+	.	ID=SEQF3397.1|LGAC01000028.1_1_REPEAT2;Parent=SEQF3397.1|LGAC01000028.1_1;Note=GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3397.1|LGAC01000028.1	CCTyper	binding_site	23225	23254	30	+	.	ID=SEQF3397.1|LGAC01000028.1_1_SPACER2;Parent=SEQF3397.1|LGAC01000028.1_1;Note=TGATTGTAGGGCTCTTGAGTCCTCTGCTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3397.1|LGAC01000028.1	CCTyper	direct_repeat	23255	23290	36	+	.	ID=SEQF3397.1|LGAC01000028.1_1_REPEAT3;Parent=SEQF3397.1|LGAC01000028.1_1;Note=GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3397.1|LGAC01000028.1	CCTyper	binding_site	23291	23320	30	+	.	ID=SEQF3397.1|LGAC01000028.1_1_SPACER3;Parent=SEQF3397.1|LGAC01000028.1_1;Note=CAGCGAGCAAACCGCCCCGCGCTGGAGATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3397.1|LGAC01000028.1	CCTyper	direct_repeat	23321	23356	36	+	.	ID=SEQF3397.1|LGAC01000028.1_1_REPEAT4;Parent=SEQF3397.1|LGAC01000028.1_1;Note=GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3397.1|LGAC01000028.1	CCTyper	binding_site	23357	23386	30	+	.	ID=SEQF3397.1|LGAC01000028.1_1_SPACER4;Parent=SEQF3397.1|LGAC01000028.1_1;Note=TGATGTTAACTATGTTGAAGGAGCTAATAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3397.1|LGAC01000028.1	CCTyper	direct_repeat	23387	23422	36	+	.	ID=SEQF3397.1|LGAC01000028.1_1_REPEAT5;Parent=SEQF3397.1|LGAC01000028.1_1;Note=GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3397.1|LGAC01000028.1	CCTyper	binding_site	23423	23452	30	+	.	ID=SEQF3397.1|LGAC01000028.1_1_SPACER5;Parent=SEQF3397.1|LGAC01000028.1_1;Note=AAGGCTTTTGGTGAGACAATCTGGCTTGGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3397.1|LGAC01000028.1	CCTyper	direct_repeat	23453	23488	36	+	.	ID=SEQF3397.1|LGAC01000028.1_1_REPEAT6;Parent=SEQF3397.1|LGAC01000028.1_1;Note=GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3397.1|LGAC01000028.1	CCTyper	OPERON	21481	29417	7937	-	.	ID=SEQF3397.1|LGAC01000028.1@1;Genome_ID=SEQF3397.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Csa5gr11_3_CAS-I-A,Csn2_2_CAS-II-A,Cas2_5_CAS-I-II-III-IV-V-VI,Cas1_4_CAS-I-II-III-IV-V-VI,Cas9_0_II;Positions=21,23,24,25,26;E-values=5.10e-04,1.70e-104,1.70e-31,4.00e-97,1.40e-187;CoverageSeq=0.663,0.987,0.963,0.911,0.738;CoverageHMM=0.389,0.892,0.897,0.996,0.971;Strand_Interference=-1;Strand_Adaptation=-1
SEQF3397.1|LGAC01000028.1	CCTyper	OPERON	121939	132595	10657	-	.	ID=SEQF3397.1|LGAC01000028.1@4;Genome_ID=SEQF3397.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type I-E;Complete_Interference=100%;Complete_Adaptation=50%;Best_type=I-E;Best_score=24.0;Genes=DEDDh_0_CAS-I-II-III-IV-V-VI,Cas1_0_IE,Cas6e_2_CAS-I-II-III-IV-V-VI,Cas5_0_IE,Cas7_1_CAS-I-E,Cse2gr11_5_CAS-I-E,Cas8e_4_CAS-I-E,Cas3_0_CAS-I,WYL_3_CAS-I-II-III-IV-V-VI;Positions=109,110,111,112,113,114,115,116,117;E-values=4.90e-35,3.30e-108,2.50e-47,2.30e-42,2.70e-113,1.20e-67,8.00e-91,1.00e-69,1.20e-09;CoverageSeq=0.512,0.854,0.972,0.862,0.943,0.95,0.888,0.438,0.485;CoverageHMM=0.981,0.993,0.995,0.974,0.997,0.975,0.994,0.983,0.89;Strand_Interference=-1;Strand_Adaptation=-1
SEQF3397.1|LGAC01000028.1	CCTyper	CDS	122843	123784	314	-	.	ID=SEQF3397.1|LGAC01000028.1_110_cas;Genome_ID=SEQF3397.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_IE;coding_strand=-;E-value=3.3e-108;Score=357.8;Coverage_Seq=0.8535031847133758;Coverage_Hmm=0.9925650557620818
SEQF3397.1|LGAC01000028.1	CCTyper	CDS	24912	25820	303	-	.	ID=SEQF3397.1|LGAC01000028.1_25_cas;Genome_ID=SEQF3397.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=3.9999999999999996e-97;Score=321.5;Coverage_Seq=0.9108910891089109;Coverage_Hmm=0.9963636363636363
SEQF3397.1|LGAC01000028.1	CCTyper	CDS	24586	24909	108	-	.	ID=SEQF3397.1|LGAC01000028.1_24_cas;Genome_ID=SEQF3397.1;Feature_type=CDS;Product=Cas Prediction : Cas2_5_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.6999999999999998e-31;Score=105.7;Coverage_Seq=0.9629629629629629;Coverage_Hmm=0.896551724137931
SEQF3397.1|LGAC01000028.1	CCTyper	CDS	128636	131422	929	-	.	ID=SEQF3397.1|LGAC01000028.1_116_cas;Genome_ID=SEQF3397.1;Feature_type=CDS;Product=Cas Prediction : Cas3_0_CAS-I;coding_strand=-;E-value=1e-69;Score=232.1;Coverage_Seq=0.4381054897739505;Coverage_Hmm=0.9830028328611898
SEQF3397.1|LGAC01000028.1	CCTyper	CDS	124433	125149	239	-	.	ID=SEQF3397.1|LGAC01000028.1_112_cas;Genome_ID=SEQF3397.1;Feature_type=CDS;Product=Cas Prediction : Cas5_0_IE;coding_strand=-;E-value=2.3e-42;Score=142.1;Coverage_Seq=0.8619246861924686;Coverage_Hmm=0.9739130434782609
SEQF3397.1|LGAC01000028.1	CCTyper	CDS	123786	124427	214	-	.	ID=SEQF3397.1|LGAC01000028.1_111_cas;Genome_ID=SEQF3397.1;Feature_type=CDS;Product=Cas Prediction : Cas6e_2_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=2.5e-47;Score=158.7;Coverage_Seq=0.9719626168224299;Coverage_Hmm=0.995049504950495
SEQF3397.1|LGAC01000028.1	CCTyper	CDS	125155	126375	407	-	.	ID=SEQF3397.1|LGAC01000028.1_113_cas;Genome_ID=SEQF3397.1;Feature_type=CDS;Product=Cas Prediction : Cas7_1_CAS-I-E;coding_strand=-;E-value=2.7e-113;Score=375.9;Coverage_Seq=0.9434889434889435;Coverage_Hmm=0.9972144846796658
SEQF3397.1|LGAC01000028.1	CCTyper	CDS	126961	128643	561	-	.	ID=SEQF3397.1|LGAC01000028.1_115_cas;Genome_ID=SEQF3397.1;Feature_type=CDS;Product=Cas Prediction : Cas8e_4_CAS-I-E;coding_strand=-;E-value=7.999999999999999e-91;Score=302.1;Coverage_Seq=0.8877005347593583;Coverage_Hmm=0.9935483870967742
SEQF3397.1|LGAC01000028.1	CCTyper	CDS	25989	29417	1143	-	.	ID=SEQF3397.1|LGAC01000028.1_26_cas;Genome_ID=SEQF3397.1;Feature_type=CDS;Product=Cas Prediction : Cas9_0_II;coding_strand=-;E-value=1.3999999999999999e-187;Score=622.5;Coverage_Seq=0.7375328083989501;Coverage_Hmm=0.9710843373493976
SEQF3397.1|LGAC01000028.1	CCTyper	CDS	21481	21765	95	-	.	ID=SEQF3397.1|LGAC01000028.1_21_cas;Genome_ID=SEQF3397.1;Feature_type=CDS;Product=Cas Prediction : Csa5gr11_3_CAS-I-A;coding_strand=-;E-value=0.00051;Score=17.2;Coverage_Seq=0.6631578947368421;Coverage_Hmm=0.3888888888888889
SEQF3397.1|LGAC01000028.1	CCTyper	CDS	126365	126964	200	-	.	ID=SEQF3397.1|LGAC01000028.1_114_cas;Genome_ID=SEQF3397.1;Feature_type=CDS;Product=Cas Prediction : Cse2gr11_5_CAS-I-E;coding_strand=-;E-value=1.2e-67;Score=224.2;Coverage_Seq=0.95;Coverage_Hmm=0.9748743718592965
SEQF3397.1|LGAC01000028.1	CCTyper	CDS	23540	24478	313	-	.	ID=SEQF3397.1|LGAC01000028.1_23_cas;Genome_ID=SEQF3397.1;Feature_type=CDS;Product=Cas Prediction : Csn2_2_CAS-II-A;coding_strand=-;E-value=1.7e-104;Score=346.3;Coverage_Seq=0.987220447284345;Coverage_Hmm=0.892128279883382
SEQF3397.1|LGAC01000028.1	CCTyper	CDS	121939	122841	301	-	.	ID=SEQF3397.1|LGAC01000028.1_109_cas;Genome_ID=SEQF3397.1;Feature_type=CDS;Product=Cas Prediction : DEDDh_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=4.899999999999999e-35;Score=117.9;Coverage_Seq=0.5116279069767442;Coverage_Hmm=0.98125
SEQF3397.1|LGAC01000028.1	CCTyper	CDS	131612	132595	328	-	.	ID=SEQF3397.1|LGAC01000028.1_117_cas;Genome_ID=SEQF3397.1;Feature_type=CDS;Product=Cas Prediction : WYL_3_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.2e-09;Score=35.3;Coverage_Seq=0.4847560975609756;Coverage_Hmm=0.8895348837209303