SEQF3435.1|QYBI01000012.1	CCTyper	repeat_region	1417	1649	233	+	.	ID=SEQF3435.1|QYBI01000012.1_1;Genome_ID=SEQF3435.1;Note=Predictor:CCtyper;Start:1417;End:1649;Consensus_Repeat:AATTTCAATCCACGCACCCGTGAAGGGTACGAC;Number_of_Repeats:4;Repeat_Length:33;Average_Spacer_Length:33.7;Repeat_Identity:100.0;Spacer_Identity:44.3;Spacer_Length_Sem:0.7;Trusted:True;Cas_Type_Prediction: I-C;Cas_Subtype_Prediction:I-C;Subtype_Probability:0.996;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000012.1	CCTyper	direct_repeat	1417	1449	33	+	.	ID=SEQF3435.1|QYBI01000012.1_1_REPEAT1;Parent=SEQF3435.1|QYBI01000012.1_1;Note=AATTTCAATCCACGCACCCGTGAAGGGTACGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000012.1	CCTyper	binding_site	1450	1482	33	+	.	ID=SEQF3435.1|QYBI01000012.1_1_SPACER1;Parent=SEQF3435.1|QYBI01000012.1_1;Note=ATGGCGTTATTGCTAAAGGAAACGGAAAATCTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000012.1	CCTyper	direct_repeat	1483	1515	33	+	.	ID=SEQF3435.1|QYBI01000012.1_1_REPEAT2;Parent=SEQF3435.1|QYBI01000012.1_1;Note=AATTTCAATCCACGCACCCGTGAAGGGTACGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000012.1	CCTyper	binding_site	1516	1548	33	+	.	ID=SEQF3435.1|QYBI01000012.1_1_SPACER2;Parent=SEQF3435.1|QYBI01000012.1_1;Note=GCTGTATTTGTTGCTTACCAATTAGTCAAACCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000012.1	CCTyper	direct_repeat	1549	1581	33	+	.	ID=SEQF3435.1|QYBI01000012.1_1_REPEAT3;Parent=SEQF3435.1|QYBI01000012.1_1;Note=AATTTCAATCCACGCACCCGTGAAGGGTACGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000012.1	CCTyper	binding_site	1582	1616	35	+	.	ID=SEQF3435.1|QYBI01000012.1_1_SPACER3;Parent=SEQF3435.1|QYBI01000012.1_1;Note=TTCTGACCGTACTATTTGCTGCACTTGCCAATGTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000012.1	CCTyper	direct_repeat	1617	1649	33	+	.	ID=SEQF3435.1|QYBI01000012.1_1_REPEAT4;Parent=SEQF3435.1|QYBI01000012.1_1;Note=AATTTCAATCCACGCACCCGTGAAGGGTACGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000002.1	CCTyper	repeat_region	88675	89567	893	+	.	ID=SEQF3435.1|QYBI01000002.1_2;Genome_ID=SEQF3435.1;Note=Predictor:CCtyper;Start:88675;End:89567;Consensus_Repeat:GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Number_of_Repeats:14;Repeat_Length:36;Average_Spacer_Length:29.9;Repeat_Identity:100.0;Spacer_Identity:40.3;Spacer_Length_Sem:0.1;Trusted:True;Cas_Type_Prediction: II-C;Cas_Subtype_Prediction:II-C;Subtype_Probability:0.946;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000002.1	CCTyper	direct_repeat	88675	88710	36	+	.	ID=SEQF3435.1|QYBI01000002.1_2_REPEAT1;Parent=SEQF3435.1|QYBI01000002.1_2;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000002.1	CCTyper	binding_site	88711	88740	30	+	.	ID=SEQF3435.1|QYBI01000002.1_2_SPACER1;Parent=SEQF3435.1|QYBI01000002.1_2;Note=ACCCCAACGGGCACAGAAGACCGCACCAGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000002.1	CCTyper	direct_repeat	88741	88776	36	+	.	ID=SEQF3435.1|QYBI01000002.1_2_REPEAT2;Parent=SEQF3435.1|QYBI01000002.1_2;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000002.1	CCTyper	binding_site	88777	88806	30	+	.	ID=SEQF3435.1|QYBI01000002.1_2_SPACER2;Parent=SEQF3435.1|QYBI01000002.1_2;Note=GAAGAAATAATAAGCTGCCACCAATGATTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000002.1	CCTyper	direct_repeat	88807	88842	36	+	.	ID=SEQF3435.1|QYBI01000002.1_2_REPEAT3;Parent=SEQF3435.1|QYBI01000002.1_2;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000002.1	CCTyper	binding_site	88843	88871	29	+	.	ID=SEQF3435.1|QYBI01000002.1_2_SPACER3;Parent=SEQF3435.1|QYBI01000002.1_2;Note=CTACAAAAAAGGCCCCATCACCCCCCTCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000002.1	CCTyper	direct_repeat	88872	88907	36	+	.	ID=SEQF3435.1|QYBI01000002.1_2_REPEAT4;Parent=SEQF3435.1|QYBI01000002.1_2;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000002.1	CCTyper	binding_site	88908	88937	30	+	.	ID=SEQF3435.1|QYBI01000002.1_2_SPACER4;Parent=SEQF3435.1|QYBI01000002.1_2;Note=TCTTATGAAGTTAATTTGATACAAGTTTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000002.1	CCTyper	direct_repeat	88938	88973	36	+	.	ID=SEQF3435.1|QYBI01000002.1_2_REPEAT5;Parent=SEQF3435.1|QYBI01000002.1_2;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000002.1	CCTyper	binding_site	88974	89003	30	+	.	ID=SEQF3435.1|QYBI01000002.1_2_SPACER5;Parent=SEQF3435.1|QYBI01000002.1_2;Note=TTTGCTAGTGAAAGCTTTGATAACACAAAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000002.1	CCTyper	direct_repeat	89004	89039	36	+	.	ID=SEQF3435.1|QYBI01000002.1_2_REPEAT6;Parent=SEQF3435.1|QYBI01000002.1_2;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000002.1	CCTyper	binding_site	89040	89069	30	+	.	ID=SEQF3435.1|QYBI01000002.1_2_SPACER6;Parent=SEQF3435.1|QYBI01000002.1_2;Note=TTGATACCTATTGTAGAGGTGTTGGTGGTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000002.1	CCTyper	direct_repeat	89070	89105	36	+	.	ID=SEQF3435.1|QYBI01000002.1_2_REPEAT7;Parent=SEQF3435.1|QYBI01000002.1_2;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000002.1	CCTyper	binding_site	89106	89135	30	+	.	ID=SEQF3435.1|QYBI01000002.1_2_SPACER7;Parent=SEQF3435.1|QYBI01000002.1_2;Note=TTACCGTCCATGTTAGGACCGCCTTCATGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000002.1	CCTyper	direct_repeat	89136	89171	36	+	.	ID=SEQF3435.1|QYBI01000002.1_2_REPEAT8;Parent=SEQF3435.1|QYBI01000002.1_2;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000002.1	CCTyper	binding_site	89172	89201	30	+	.	ID=SEQF3435.1|QYBI01000002.1_2_SPACER8;Parent=SEQF3435.1|QYBI01000002.1_2;Note=ATATCTATAATGACAAAGATACCTTATCAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000002.1	CCTyper	direct_repeat	89202	89237	36	+	.	ID=SEQF3435.1|QYBI01000002.1_2_REPEAT9;Parent=SEQF3435.1|QYBI01000002.1_2;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000002.1	CCTyper	binding_site	89238	89267	30	+	.	ID=SEQF3435.1|QYBI01000002.1_2_SPACER9;Parent=SEQF3435.1|QYBI01000002.1_2;Note=AATATGCTGATACTAATGATATTCATAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000002.1	CCTyper	direct_repeat	89268	89303	36	+	.	ID=SEQF3435.1|QYBI01000002.1_2_REPEAT10;Parent=SEQF3435.1|QYBI01000002.1_2;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000002.1	CCTyper	binding_site	89304	89333	30	+	.	ID=SEQF3435.1|QYBI01000002.1_2_SPACER10;Parent=SEQF3435.1|QYBI01000002.1_2;Note=TCCATTAAATGTTACAGGATATGCTTCTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000002.1	CCTyper	direct_repeat	89334	89369	36	+	.	ID=SEQF3435.1|QYBI01000002.1_2_REPEAT11;Parent=SEQF3435.1|QYBI01000002.1_2;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000002.1	CCTyper	binding_site	89370	89399	30	+	.	ID=SEQF3435.1|QYBI01000002.1_2_SPACER11;Parent=SEQF3435.1|QYBI01000002.1_2;Note=TTGGTACCGGTCTCGGCCTTATGTCCTTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000002.1	CCTyper	direct_repeat	89400	89435	36	+	.	ID=SEQF3435.1|QYBI01000002.1_2_REPEAT12;Parent=SEQF3435.1|QYBI01000002.1_2;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000002.1	CCTyper	binding_site	89436	89465	30	+	.	ID=SEQF3435.1|QYBI01000002.1_2_SPACER12;Parent=SEQF3435.1|QYBI01000002.1_2;Note=CATGCCCCGTATCCCACTAATCGTTGCTCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000002.1	CCTyper	direct_repeat	89466	89501	36	+	.	ID=SEQF3435.1|QYBI01000002.1_2_REPEAT13;Parent=SEQF3435.1|QYBI01000002.1_2;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000002.1	CCTyper	binding_site	89502	89531	30	+	.	ID=SEQF3435.1|QYBI01000002.1_2_SPACER13;Parent=SEQF3435.1|QYBI01000002.1_2;Note=CGAATCTTTCTTATTATTACAAGACTAACA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000002.1	CCTyper	direct_repeat	89532	89567	36	+	.	ID=SEQF3435.1|QYBI01000002.1_2_REPEAT14;Parent=SEQF3435.1|QYBI01000002.1_2;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3435.1|QYBI01000012.1	CCTyper	OPERON	1797	10120	8324	-	.	ID=SEQF3435.1|QYBI01000012.1@1;Genome_ID=SEQF3435.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type I-C;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=I-C;Best_score=21.0;Genes=Cas2_4_CAS-I-II-III-IV-V-VI,Cas1_0_IC,Cas4_0_I-II,Cas7_2_CAS-I-C,Cas8c_0_IC,Cas5_0_IC,Cas3_1_CAS-I;Positions=1,2,3,4,5,6,8;E-values=5.10e-30,2.90e-142,8.80e-32,3.60e-125,2.30e-121,3.10e-88,8.70e-94;CoverageSeq=0.929,0.988,0.844,0.993,0.978,0.817,0.921;CoverageHMM=0.978,0.997,0.983,0.989,0.993,0.995,0.977;Strand_Interference=-1;Strand_Adaptation=-1
SEQF3435.1|QYBI01000002.1	CCTyper	OPERON	82773	91209	8437	+	.	ID=SEQF3435.1|QYBI01000002.1@3;Genome_ID=SEQF3435.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Cas9_0_II,Cas1_4_CAS-I-II-III-IV-V-VI,Cas2_5_CAS-I-II-III-IV-V-VI,Csn2_2_CAS-II-A,Csa5gr11_3_CAS-I-A;Positions=78,79,80,81,83;E-values=1.20e-199,1.70e-98,2.40e-31,1.40e-125,2.20e-04;CoverageSeq=0.743,0.911,0.963,0.989,0.663;CoverageHMM=0.976,0.996,0.897,1.0,0.389;Strand_Interference=1;Strand_Adaptation=1
SEQF3435.1|QYBI01000012.1	CCTyper	CDS	2101	3126	342	-	.	ID=SEQF3435.1|QYBI01000012.1_2_cas;Genome_ID=SEQF3435.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_IC;coding_strand=-;E-value=2.9e-142;Score=470.6;Coverage_Seq=0.9883040935672515;Coverage_Hmm=0.9970588235294118
SEQF3435.1|QYBI01000002.1	CCTyper	CDS	86343	87251	303	+	.	ID=SEQF3435.1|QYBI01000002.1_79_cas;Genome_ID=SEQF3435.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.7e-98;Score=326.1;Coverage_Seq=0.9108910891089109;Coverage_Hmm=0.9963636363636363
SEQF3435.1|QYBI01000012.1	CCTyper	CDS	1797	2090	98	-	.	ID=SEQF3435.1|QYBI01000012.1_1_cas;Genome_ID=SEQF3435.1;Feature_type=CDS;Product=Cas Prediction : Cas2_4_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=5.1000000000000004e-30;Score=100.6;Coverage_Seq=0.9285714285714286;Coverage_Hmm=0.9775280898876404
SEQF3435.1|QYBI01000002.1	CCTyper	CDS	87254	87577	108	+	.	ID=SEQF3435.1|QYBI01000002.1_80_cas;Genome_ID=SEQF3435.1;Feature_type=CDS;Product=Cas Prediction : Cas2_5_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=2.4e-31;Score=105.2;Coverage_Seq=0.9629629629629629;Coverage_Hmm=0.896551724137931
SEQF3435.1|QYBI01000012.1	CCTyper	CDS	7700	10120	807	-	.	ID=SEQF3435.1|QYBI01000012.1_8_cas;Genome_ID=SEQF3435.1;Feature_type=CDS;Product=Cas Prediction : Cas3_1_CAS-I;coding_strand=-;E-value=8.699999999999999e-94;Score=312.1;Coverage_Seq=0.9206939281288724;Coverage_Hmm=0.9771812080536912
SEQF3435.1|QYBI01000012.1	CCTyper	CDS	3123	3794	224	-	.	ID=SEQF3435.1|QYBI01000012.1_3_cas;Genome_ID=SEQF3435.1;Feature_type=CDS;Product=Cas Prediction : Cas4_0_I-II;coding_strand=-;E-value=8.8e-32;Score=107.2;Coverage_Seq=0.84375;Coverage_Hmm=0.9833333333333333
SEQF3435.1|QYBI01000012.1	CCTyper	CDS	6573	7310	246	-	.	ID=SEQF3435.1|QYBI01000012.1_6_cas;Genome_ID=SEQF3435.1;Feature_type=CDS;Product=Cas Prediction : Cas5_0_IC;coding_strand=-;E-value=3.1e-88;Score=292.0;Coverage_Seq=0.8170731707317073;Coverage_Hmm=0.9950738916256158
SEQF3435.1|QYBI01000012.1	CCTyper	CDS	3796	4647	284	-	.	ID=SEQF3435.1|QYBI01000012.1_4_cas;Genome_ID=SEQF3435.1;Feature_type=CDS;Product=Cas Prediction : Cas7_2_CAS-I-C;coding_strand=-;E-value=3.6e-125;Score=413.8;Coverage_Seq=0.9929577464788732;Coverage_Hmm=0.9893992932862191
SEQF3435.1|QYBI01000012.1	CCTyper	CDS	4651	6573	641	-	.	ID=SEQF3435.1|QYBI01000012.1_5_cas;Genome_ID=SEQF3435.1;Feature_type=CDS;Product=Cas Prediction : Cas8c_0_IC;coding_strand=-;E-value=2.3e-121;Score=403.0;Coverage_Seq=0.9781591263650546;Coverage_Hmm=0.9931972789115646
SEQF3435.1|QYBI01000002.1	CCTyper	CDS	82773	86177	1135	+	.	ID=SEQF3435.1|QYBI01000002.1_78_cas;Genome_ID=SEQF3435.1;Feature_type=CDS;Product=Cas Prediction : Cas9_0_II;coding_strand=+;E-value=1.2e-199;Score=662.4;Coverage_Seq=0.7427312775330397;Coverage_Hmm=0.9759036144578314
SEQF3435.1|QYBI01000002.1	CCTyper	CDS	90925	91209	95	+	.	ID=SEQF3435.1|QYBI01000002.1_83_cas;Genome_ID=SEQF3435.1;Feature_type=CDS;Product=Cas Prediction : Csa5gr11_3_CAS-I-A;coding_strand=+;E-value=0.00022;Score=18.4;Coverage_Seq=0.6631578947368421;Coverage_Hmm=0.3888888888888889
SEQF3435.1|QYBI01000002.1	CCTyper	CDS	87574	88623	350	+	.	ID=SEQF3435.1|QYBI01000002.1_81_cas;Genome_ID=SEQF3435.1;Feature_type=CDS;Product=Cas Prediction : Csn2_2_CAS-II-A;coding_strand=+;E-value=1.4e-125;Score=415.6;Coverage_Seq=0.9885714285714285;Coverage_Hmm=1.0