SEQF3445.1|QYBQ01000003.1	CCTyper	repeat_region	320096	320857	762	+	.	ID=SEQF3445.1|QYBQ01000003.1_1;Genome_ID=SEQF3445.1;Note=Predictor:CCtyper;Start:320096;End:320857;Consensus_Repeat:GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Number_of_Repeats:12;Repeat_Length:36;Average_Spacer_Length:30.0;Repeat_Identity:92.7;Spacer_Identity:44.6;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:II-A;Subtype_Probability:0.549;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3445.1|QYBQ01000003.1	CCTyper	direct_repeat	320096	320131	36	+	.	ID=SEQF3445.1|QYBQ01000003.1_1_REPEAT1;Parent=SEQF3445.1|QYBQ01000003.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3445.1|QYBQ01000003.1	CCTyper	binding_site	320132	320161	30	+	.	ID=SEQF3445.1|QYBQ01000003.1_1_SPACER1;Parent=SEQF3445.1|QYBQ01000003.1_1;Note=TTAGAGCTGTGCCGACTGCAACTACTGCGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3445.1|QYBQ01000003.1	CCTyper	direct_repeat	320162	320197	36	+	.	ID=SEQF3445.1|QYBQ01000003.1_1_REPEAT2;Parent=SEQF3445.1|QYBQ01000003.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3445.1|QYBQ01000003.1	CCTyper	binding_site	320198	320227	30	+	.	ID=SEQF3445.1|QYBQ01000003.1_1_SPACER2;Parent=SEQF3445.1|QYBQ01000003.1_1;Note=AATTCAAATTGATTACAGTATTAAAGATTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3445.1|QYBQ01000003.1	CCTyper	direct_repeat	320228	320263	36	+	.	ID=SEQF3445.1|QYBQ01000003.1_1_REPEAT3;Parent=SEQF3445.1|QYBQ01000003.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3445.1|QYBQ01000003.1	CCTyper	binding_site	320264	320293	30	+	.	ID=SEQF3445.1|QYBQ01000003.1_1_SPACER3;Parent=SEQF3445.1|QYBQ01000003.1_1;Note=TAACTAATCCAACGACAATCACGGTTGCTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3445.1|QYBQ01000003.1	CCTyper	direct_repeat	320294	320329	36	+	.	ID=SEQF3445.1|QYBQ01000003.1_1_REPEAT4;Parent=SEQF3445.1|QYBQ01000003.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3445.1|QYBQ01000003.1	CCTyper	binding_site	320330	320359	30	+	.	ID=SEQF3445.1|QYBQ01000003.1_1_SPACER4;Parent=SEQF3445.1|QYBQ01000003.1_1;Note=TTGCTAATCTGACAGAACAGTACAATAAGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3445.1|QYBQ01000003.1	CCTyper	direct_repeat	320360	320395	36	+	.	ID=SEQF3445.1|QYBQ01000003.1_1_REPEAT5;Parent=SEQF3445.1|QYBQ01000003.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3445.1|QYBQ01000003.1	CCTyper	binding_site	320396	320425	30	+	.	ID=SEQF3445.1|QYBQ01000003.1_1_SPACER5;Parent=SEQF3445.1|QYBQ01000003.1_1;Note=ATTCTTATAATTTGGTGCATACACTTCATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3445.1|QYBQ01000003.1	CCTyper	direct_repeat	320426	320461	36	+	.	ID=SEQF3445.1|QYBQ01000003.1_1_REPEAT6;Parent=SEQF3445.1|QYBQ01000003.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3445.1|QYBQ01000003.1	CCTyper	binding_site	320462	320491	30	+	.	ID=SEQF3445.1|QYBQ01000003.1_1_SPACER6;Parent=SEQF3445.1|QYBQ01000003.1_1;Note=TTCTTCATAGTTTGTTATAACCTGTCCATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3445.1|QYBQ01000003.1	CCTyper	direct_repeat	320492	320527	36	+	.	ID=SEQF3445.1|QYBQ01000003.1_1_REPEAT7;Parent=SEQF3445.1|QYBQ01000003.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3445.1|QYBQ01000003.1	CCTyper	binding_site	320528	320557	30	+	.	ID=SEQF3445.1|QYBQ01000003.1_1_SPACER7;Parent=SEQF3445.1|QYBQ01000003.1_1;Note=CCTTCTTTGATTTGCGAGAAGCAATTACTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3445.1|QYBQ01000003.1	CCTyper	direct_repeat	320558	320593	36	+	.	ID=SEQF3445.1|QYBQ01000003.1_1_REPEAT8;Parent=SEQF3445.1|QYBQ01000003.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3445.1|QYBQ01000003.1	CCTyper	binding_site	320594	320623	30	+	.	ID=SEQF3445.1|QYBQ01000003.1_1_SPACER8;Parent=SEQF3445.1|QYBQ01000003.1_1;Note=TGTTTCAGACATTACGTATCATATTTATAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3445.1|QYBQ01000003.1	CCTyper	direct_repeat	320624	320659	36	+	.	ID=SEQF3445.1|QYBQ01000003.1_1_REPEAT9;Parent=SEQF3445.1|QYBQ01000003.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3445.1|QYBQ01000003.1	CCTyper	binding_site	320660	320689	30	+	.	ID=SEQF3445.1|QYBQ01000003.1_1_SPACER9;Parent=SEQF3445.1|QYBQ01000003.1_1;Note=TGTTTACTAGCCATTCCTAGACCATCAAAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3445.1|QYBQ01000003.1	CCTyper	direct_repeat	320690	320725	36	+	.	ID=SEQF3445.1|QYBQ01000003.1_1_REPEAT10;Parent=SEQF3445.1|QYBQ01000003.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3445.1|QYBQ01000003.1	CCTyper	binding_site	320726	320755	30	+	.	ID=SEQF3445.1|QYBQ01000003.1_1_SPACER10;Parent=SEQF3445.1|QYBQ01000003.1_1;Note=TTAAGATAAAAGATGCTATTGCCAGCTCAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3445.1|QYBQ01000003.1	CCTyper	direct_repeat	320756	320791	36	+	.	ID=SEQF3445.1|QYBQ01000003.1_1_REPEAT11;Parent=SEQF3445.1|QYBQ01000003.1_1;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3445.1|QYBQ01000003.1	CCTyper	binding_site	320792	320821	30	+	.	ID=SEQF3445.1|QYBQ01000003.1_1_SPACER11;Parent=SEQF3445.1|QYBQ01000003.1_1;Note=ATGTGAAAAGAAAGTAACTACTACATTTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3445.1|QYBQ01000003.1	CCTyper	direct_repeat	320822	320857	36	+	.	ID=SEQF3445.1|QYBQ01000003.1_1_REPEAT12;Parent=SEQF3445.1|QYBQ01000003.1_1;Note=GTTTTAGAGCCATGTTAGTTACTGATTTACTAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3445.1|QYBQ01000009.1	CCTyper	repeat_region	21248	21542	295	+	.	ID=SEQF3445.1|QYBQ01000009.1_2;Genome_ID=SEQF3445.1;Note=Predictor:CCtyper;Start:21248;End:21542;Consensus_Repeat:GTCGCACCCTTCACGGGTGCGTGGATTGAAAT;Number_of_Repeats:5;Repeat_Length:32;Average_Spacer_Length:33.8;Repeat_Identity:81.0;Spacer_Identity:44.3;Spacer_Length_Sem:0.5;Trusted:True;Cas_Type_Prediction: I-C;Cas_Subtype_Prediction:I-C;Subtype_Probability:0.991;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3445.1|QYBQ01000009.1	CCTyper	direct_repeat	21248	21279	32	+	.	ID=SEQF3445.1|QYBQ01000009.1_2_REPEAT1;Parent=SEQF3445.1|QYBQ01000009.1_2;Note=GTCGCACCCTTCACGGGTGCGTGGATTGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3445.1|QYBQ01000009.1	CCTyper	binding_site	21280	21313	34	+	.	ID=SEQF3445.1|QYBQ01000009.1_2_SPACER1;Parent=SEQF3445.1|QYBQ01000009.1_2;Note=TTGGATGATCCGTAATGAAAAAGGAAATGAGAGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3445.1|QYBQ01000009.1	CCTyper	direct_repeat	21314	21345	32	+	.	ID=SEQF3445.1|QYBQ01000009.1_2_REPEAT2;Parent=SEQF3445.1|QYBQ01000009.1_2;Note=GTCGCACCCTTCACGGGTGCGTGGATTGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3445.1|QYBQ01000009.1	CCTyper	binding_site	21346	21378	33	+	.	ID=SEQF3445.1|QYBQ01000009.1_2_SPACER2;Parent=SEQF3445.1|QYBQ01000009.1_2;Note=ACTGAAAAAGAATTACCAAGCAGTAATCATTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3445.1|QYBQ01000009.1	CCTyper	direct_repeat	21379	21410	32	+	.	ID=SEQF3445.1|QYBQ01000009.1_2_REPEAT3;Parent=SEQF3445.1|QYBQ01000009.1_2;Note=GTCGCACCCTTCACGGGTGCGTGGATTGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3445.1|QYBQ01000009.1	CCTyper	binding_site	21411	21443	33	+	.	ID=SEQF3445.1|QYBQ01000009.1_2_SPACER3;Parent=SEQF3445.1|QYBQ01000009.1_2;Note=TTTATGAACAAATCTACTTACGCAGAGCTTGTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3445.1|QYBQ01000009.1	CCTyper	direct_repeat	21444	21475	32	+	.	ID=SEQF3445.1|QYBQ01000009.1_2_REPEAT4;Parent=SEQF3445.1|QYBQ01000009.1_2;Note=GTCGCACCCTTCACGGGTGCGTGGATTGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3445.1|QYBQ01000009.1	CCTyper	binding_site	21476	21510	35	+	.	ID=SEQF3445.1|QYBQ01000009.1_2_SPACER4;Parent=SEQF3445.1|QYBQ01000009.1_2;Note=TTCAAAAAATCCTGAAATAAACACTTCTGGTTTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3445.1|QYBQ01000009.1	CCTyper	direct_repeat	21511	21542	32	+	.	ID=SEQF3445.1|QYBQ01000009.1_2_REPEAT5;Parent=SEQF3445.1|QYBQ01000009.1_2;Note=GTCGCACCCTTTAAAGGTTGGGTTTGTTTTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3445.1|QYBQ01000009.1	CCTyper	OPERON	11813	21100	9288	+	.	ID=SEQF3445.1|QYBQ01000009.1@1;Genome_ID=SEQF3445.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type I-C;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=I-C;Best_score=21.0;Genes=WYL_3_CAS-I-II-III-IV-V-VI,Cas3_1_CAS-I,Cas5_0_IC,Cas8c_0_CAS-I-C,Cas7_0_IC,Cas4_0_I-II,Cas1_0_IC,Cas2_4_CAS-I-II-III-IV-V-VI;Positions=16,17,18,19,20,21,23,24;E-values=4.80e-14,3.40e-103,7.30e-92,1.90e-107,4.80e-124,2.00e-31,1.20e-107,1.00e-30;CoverageSeq=0.517,0.895,0.81,0.933,0.969,0.844,0.955,0.929;CoverageHMM=0.884,0.958,0.995,0.96,0.996,0.983,0.747,0.978;Strand_Interference=1;Strand_Adaptation=1
SEQF3445.1|QYBQ01000003.1	CCTyper	OPERON	313362	322432	9071	+	.	ID=SEQF3445.1|QYBQ01000003.1@9;Genome_ID=SEQF3445.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Cas9_1_II,Cas1_4_CAS-I-II-III-IV-V-VI,Cas2_5_CAS-I-II-III-IV-V-VI,Csn2_1_CAS-II-A,Csa5gr11_3_CAS-I-A;Positions=304,305,306,307,311;E-values=0.00e+00,1.70e-103,1.40e-51,2.90e-106,2.10e-04;CoverageSeq=0.996,0.931,0.965,0.982,0.663;CoverageHMM=0.999,0.996,0.983,0.995,0.389;Strand_Interference=1;Strand_Adaptation=1
SEQF3445.1|QYBQ01000009.1	CCTyper	CDS	19993	20796	268	+	.	ID=SEQF3445.1|QYBQ01000009.1_23_cas;Genome_ID=SEQF3445.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_IC;coding_strand=+;E-value=1.2e-107;Score=356.7;Coverage_Seq=0.9552238805970149;Coverage_Hmm=0.7470588235294118
SEQF3445.1|QYBQ01000003.1	CCTyper	CDS	317399	318265	289	+	.	ID=SEQF3445.1|QYBQ01000003.1_305_cas;Genome_ID=SEQF3445.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.7e-103;Score=342.4;Coverage_Seq=0.9307958477508651;Coverage_Hmm=0.9963636363636363
SEQF3445.1|QYBQ01000009.1	CCTyper	CDS	20807	21100	98	+	.	ID=SEQF3445.1|QYBQ01000009.1_24_cas;Genome_ID=SEQF3445.1;Feature_type=CDS;Product=Cas Prediction : Cas2_4_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=9.999999999999999e-31;Score=102.7;Coverage_Seq=0.9285714285714286;Coverage_Hmm=0.9775280898876404
SEQF3445.1|QYBQ01000003.1	CCTyper	CDS	318262	318606	115	+	.	ID=SEQF3445.1|QYBQ01000003.1_306_cas;Genome_ID=SEQF3445.1;Feature_type=CDS;Product=Cas Prediction : Cas2_5_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.4e-51;Score=170.4;Coverage_Seq=0.9652173913043478;Coverage_Hmm=0.9827586206896551
SEQF3445.1|QYBQ01000009.1	CCTyper	CDS	13038	15440	801	+	.	ID=SEQF3445.1|QYBQ01000009.1_17_cas;Genome_ID=SEQF3445.1;Feature_type=CDS;Product=Cas Prediction : Cas3_1_CAS-I;coding_strand=+;E-value=3.4e-103;Score=343.1;Coverage_Seq=0.8951310861423221;Coverage_Hmm=0.9583892617449664
SEQF3445.1|QYBQ01000009.1	CCTyper	CDS	19096	19767	224	+	.	ID=SEQF3445.1|QYBQ01000009.1_21_cas;Genome_ID=SEQF3445.1;Feature_type=CDS;Product=Cas Prediction : Cas4_0_I-II;coding_strand=+;E-value=2e-31;Score=105.9;Coverage_Seq=0.84375;Coverage_Hmm=0.9833333333333333
SEQF3445.1|QYBQ01000009.1	CCTyper	CDS	15541	16284	248	+	.	ID=SEQF3445.1|QYBQ01000009.1_18_cas;Genome_ID=SEQF3445.1;Feature_type=CDS;Product=Cas Prediction : Cas5_0_IC;coding_strand=+;E-value=7.3e-92;Score=303.8;Coverage_Seq=0.8104838709677419;Coverage_Hmm=0.9950738916256158
SEQF3445.1|QYBQ01000009.1	CCTyper	CDS	18219	19094	292	+	.	ID=SEQF3445.1|QYBQ01000009.1_20_cas;Genome_ID=SEQF3445.1;Feature_type=CDS;Product=Cas Prediction : Cas7_0_IC;coding_strand=+;E-value=4.800000000000001e-124;Score=410.1;Coverage_Seq=0.9691780821917808;Coverage_Hmm=0.9964788732394366
SEQF3445.1|QYBQ01000009.1	CCTyper	CDS	16284	18215	644	+	.	ID=SEQF3445.1|QYBQ01000009.1_19_cas;Genome_ID=SEQF3445.1;Feature_type=CDS;Product=Cas Prediction : Cas8c_0_CAS-I-C;coding_strand=+;E-value=1.8999999999999998e-107;Score=357.0;Coverage_Seq=0.9332298136645962;Coverage_Hmm=0.9600694444444444
SEQF3445.1|QYBQ01000003.1	CCTyper	CDS	313362	317399	1346	+	.	ID=SEQF3445.1|QYBQ01000003.1_304_cas;Genome_ID=SEQF3445.1;Feature_type=CDS;Product=Cas Prediction : Cas9_1_II;coding_strand=+;E-value=0.0;Score=1274.2;Coverage_Seq=0.9955423476968797;Coverage_Hmm=0.9991071428571429
SEQF3445.1|QYBQ01000003.1	CCTyper	CDS	322148	322432	95	+	.	ID=SEQF3445.1|QYBQ01000003.1_311_cas;Genome_ID=SEQF3445.1;Feature_type=CDS;Product=Cas Prediction : Csa5gr11_3_CAS-I-A;coding_strand=+;E-value=0.00021;Score=18.4;Coverage_Seq=0.6631578947368421;Coverage_Hmm=0.3888888888888889
SEQF3445.1|QYBQ01000003.1	CCTyper	CDS	318596	319258	221	+	.	ID=SEQF3445.1|QYBQ01000003.1_307_cas;Genome_ID=SEQF3445.1;Feature_type=CDS;Product=Cas Prediction : Csn2_1_CAS-II-A;coding_strand=+;E-value=2.9e-106;Score=350.8;Coverage_Seq=0.9819004524886877;Coverage_Hmm=0.9954128440366973
SEQF3445.1|QYBQ01000009.1	CCTyper	CDS	11813	12787	325	+	.	ID=SEQF3445.1|QYBQ01000009.1_16_cas;Genome_ID=SEQF3445.1;Feature_type=CDS;Product=Cas Prediction : WYL_3_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=4.8e-14;Score=49.6;Coverage_Seq=0.5169230769230769;Coverage_Hmm=0.8837209302325582