SEQF3471.1|LS483349.1	CCTyper	repeat_region	412076	412502	427	+	.	ID=SEQF3471.1|LS483349.1_1;Genome_ID=SEQF3471.1;Note=Predictor:CCtyper;Start:412076;End:412502;Consensus_Repeat:GTCGCACCCTTCACGGGTGCGTGGATTGAAAT;Number_of_Repeats:7;Repeat_Length:32;Average_Spacer_Length:33.8;Repeat_Identity:100.0;Spacer_Identity:43.8;Spacer_Length_Sem:0.4;Trusted:True;Cas_Type_Prediction: I-C;Cas_Subtype_Prediction:I-C;Subtype_Probability:0.991;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3471.1|LS483349.1	CCTyper	direct_repeat	412076	412107	32	+	.	ID=SEQF3471.1|LS483349.1_1_REPEAT1;Parent=SEQF3471.1|LS483349.1_1;Note=GTCGCACCCTTCACGGGTGCGTGGATTGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3471.1|LS483349.1	CCTyper	binding_site	412108	412141	34	+	.	ID=SEQF3471.1|LS483349.1_1_SPACER1;Parent=SEQF3471.1|LS483349.1_1;Note=TGCATTTGTTAGTTGATTATCTCGACCTGTCCCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3471.1|LS483349.1	CCTyper	direct_repeat	412142	412173	32	+	.	ID=SEQF3471.1|LS483349.1_1_REPEAT2;Parent=SEQF3471.1|LS483349.1_1;Note=GTCGCACCCTTCACGGGTGCGTGGATTGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3471.1|LS483349.1	CCTyper	binding_site	412174	412208	35	+	.	ID=SEQF3471.1|LS483349.1_1_SPACER2;Parent=SEQF3471.1|LS483349.1_1;Note=AATTTGAAATGTCTATCCAATCAGAAGATTTATCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3471.1|LS483349.1	CCTyper	direct_repeat	412209	412240	32	+	.	ID=SEQF3471.1|LS483349.1_1_REPEAT3;Parent=SEQF3471.1|LS483349.1_1;Note=GTCGCACCCTTCACGGGTGCGTGGATTGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3471.1|LS483349.1	CCTyper	binding_site	412241	412273	33	+	.	ID=SEQF3471.1|LS483349.1_1_SPACER3;Parent=SEQF3471.1|LS483349.1_1;Note=TACAGTGCGACTGACTGCAGTAATAAACACTAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3471.1|LS483349.1	CCTyper	direct_repeat	412274	412305	32	+	.	ID=SEQF3471.1|LS483349.1_1_REPEAT4;Parent=SEQF3471.1|LS483349.1_1;Note=GTCGCACCCTTCACGGGTGCGTGGATTGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3471.1|LS483349.1	CCTyper	binding_site	412306	412340	35	+	.	ID=SEQF3471.1|LS483349.1_1_SPACER4;Parent=SEQF3471.1|LS483349.1_1;Note=AGAGCTCGAAAAGAGCATAACTAACCCAACAACAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3471.1|LS483349.1	CCTyper	direct_repeat	412341	412372	32	+	.	ID=SEQF3471.1|LS483349.1_1_REPEAT5;Parent=SEQF3471.1|LS483349.1_1;Note=GTCGCACCCTTCACGGGTGCGTGGATTGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3471.1|LS483349.1	CCTyper	binding_site	412373	412405	33	+	.	ID=SEQF3471.1|LS483349.1_1_SPACER5;Parent=SEQF3471.1|LS483349.1_1;Note=ACTGAAAAAGAATTACCAAGCAGTAATCATTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3471.1|LS483349.1	CCTyper	direct_repeat	412406	412437	32	+	.	ID=SEQF3471.1|LS483349.1_1_REPEAT6;Parent=SEQF3471.1|LS483349.1_1;Note=GTCGCACCCTTCACGGGTGCGTGGATTGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3471.1|LS483349.1	CCTyper	binding_site	412438	412470	33	+	.	ID=SEQF3471.1|LS483349.1_1_SPACER6;Parent=SEQF3471.1|LS483349.1_1;Note=AAGATGGCTGGAATATGAAGGAGAGGTAGAAAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3471.1|LS483349.1	CCTyper	direct_repeat	412471	412502	32	+	.	ID=SEQF3471.1|LS483349.1_1_REPEAT7;Parent=SEQF3471.1|LS483349.1_1;Note=GTCGCACCCTTCACGGGTGCGTGGATTGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3471.1|LS483349.1	CCTyper	repeat_region	741870	742103	234	+	.	ID=SEQF3471.1|LS483349.1_2;Genome_ID=SEQF3471.1;Note=Predictor:CCtyper;Start:741870;End:742103;Consensus_Repeat:GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Number_of_Repeats:4;Repeat_Length:36;Average_Spacer_Length:30.0;Repeat_Identity:81.3;Spacer_Identity:43.0;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:II-A;Subtype_Probability:0.549;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3471.1|LS483349.1	CCTyper	direct_repeat	741870	741905	36	+	.	ID=SEQF3471.1|LS483349.1_2_REPEAT1;Parent=SEQF3471.1|LS483349.1_2;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3471.1|LS483349.1	CCTyper	binding_site	741906	741935	30	+	.	ID=SEQF3471.1|LS483349.1_2_SPACER1;Parent=SEQF3471.1|LS483349.1_2;Note=GAAAAGCCAGCTCAAGACGATAATCTTGAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3471.1|LS483349.1	CCTyper	direct_repeat	741936	741971	36	+	.	ID=SEQF3471.1|LS483349.1_2_REPEAT2;Parent=SEQF3471.1|LS483349.1_2;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3471.1|LS483349.1	CCTyper	binding_site	741972	742001	30	+	.	ID=SEQF3471.1|LS483349.1_2_SPACER2;Parent=SEQF3471.1|LS483349.1_2;Note=CTGTTAATTCAAACTCATGTAACACAGGCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3471.1|LS483349.1	CCTyper	direct_repeat	742002	742037	36	+	.	ID=SEQF3471.1|LS483349.1_2_REPEAT3;Parent=SEQF3471.1|LS483349.1_2;Note=GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3471.1|LS483349.1	CCTyper	binding_site	742038	742067	30	+	.	ID=SEQF3471.1|LS483349.1_2_SPACER3;Parent=SEQF3471.1|LS483349.1_2;Note=CGGCATATATAATCCGTAAAGGCGGCACAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3471.1|LS483349.1	CCTyper	direct_repeat	742068	742103	36	+	.	ID=SEQF3471.1|LS483349.1_2_REPEAT4;Parent=SEQF3471.1|LS483349.1_2;Note=GTTTTAGAGCCATGTTAGTTACTGATTTACTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3471.1|LS483349.1	CCTyper	OPERON	402650	411928	9279	+	.	ID=SEQF3471.1|LS483349.1@9;Genome_ID=SEQF3471.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type I-C;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=I-C;Best_score=21.0;Genes=WYL_3_CAS-I-II-III-IV-V-VI,Cas3_1_CAS-I,Cas5_0_IC,Cas8c_0_CAS-I-C,Cas7_0_IC,Cas4_0_I-II,Cas1_0_IC,Cas2_4_CAS-I-II-III-IV-V-VI;Positions=372,373,374,375,376,377,379,380;E-values=4.70e-14,3.40e-103,7.20e-92,1.90e-107,4.70e-124,2.00e-31,1.00e-109,2.00e-30;CoverageSeq=0.517,0.895,0.81,0.933,0.969,0.844,0.955,0.929;CoverageHMM=0.884,0.958,0.995,0.96,0.996,0.983,0.747,0.978;Strand_Interference=1;Strand_Adaptation=1
SEQF3471.1|LS483349.1	CCTyper	OPERON	735137	741033	5897	+	.	ID=SEQF3471.1|LS483349.1@17;Genome_ID=SEQF3471.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Cas9_1_II,Cas1_4_CAS-I-II-III-IV-V-VI,Cas2_5_CAS-I-II-III-IV-V-VI,Csn2_1_CAS-II-A;Positions=695,696,697,698;E-values=0.00e+00,6.70e-103,1.40e-51,9.90e-107;CoverageSeq=0.996,0.931,0.965,0.982;CoverageHMM=0.999,0.996,0.983,0.995;Strand_Interference=1;Strand_Adaptation=1
SEQF3471.1|LS483349.1	CCTyper	CDS	410830	411624	265	+	.	ID=SEQF3471.1|LS483349.1_379_cas;Genome_ID=SEQF3471.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_IC;coding_strand=+;E-value=1e-109;Score=363.5;Coverage_Seq=0.9547169811320755;Coverage_Hmm=0.7470588235294118
SEQF3471.1|LS483349.1	CCTyper	CDS	739174	740040	289	+	.	ID=SEQF3471.1|LS483349.1_696_cas;Genome_ID=SEQF3471.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=6.7e-103;Score=340.4;Coverage_Seq=0.9307958477508651;Coverage_Hmm=0.9963636363636363
SEQF3471.1|LS483349.1	CCTyper	CDS	411635	411928	98	+	.	ID=SEQF3471.1|LS483349.1_380_cas;Genome_ID=SEQF3471.1;Feature_type=CDS;Product=Cas Prediction : Cas2_4_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.9999999999999998e-30;Score=101.8;Coverage_Seq=0.9285714285714286;Coverage_Hmm=0.9775280898876404
SEQF3471.1|LS483349.1	CCTyper	CDS	740037	740381	115	+	.	ID=SEQF3471.1|LS483349.1_697_cas;Genome_ID=SEQF3471.1;Feature_type=CDS;Product=Cas Prediction : Cas2_5_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.4e-51;Score=170.4;Coverage_Seq=0.9652173913043478;Coverage_Hmm=0.9827586206896551
SEQF3471.1|LS483349.1	CCTyper	CDS	403875	406277	801	+	.	ID=SEQF3471.1|LS483349.1_373_cas;Genome_ID=SEQF3471.1;Feature_type=CDS;Product=Cas Prediction : Cas3_1_CAS-I;coding_strand=+;E-value=3.4e-103;Score=343.1;Coverage_Seq=0.8951310861423221;Coverage_Hmm=0.9583892617449664
SEQF3471.1|LS483349.1	CCTyper	CDS	409933	410604	224	+	.	ID=SEQF3471.1|LS483349.1_377_cas;Genome_ID=SEQF3471.1;Feature_type=CDS;Product=Cas Prediction : Cas4_0_I-II;coding_strand=+;E-value=2e-31;Score=105.9;Coverage_Seq=0.84375;Coverage_Hmm=0.9833333333333333
SEQF3471.1|LS483349.1	CCTyper	CDS	406378	407121	248	+	.	ID=SEQF3471.1|LS483349.1_374_cas;Genome_ID=SEQF3471.1;Feature_type=CDS;Product=Cas Prediction : Cas5_0_IC;coding_strand=+;E-value=7.2e-92;Score=303.8;Coverage_Seq=0.8104838709677419;Coverage_Hmm=0.9950738916256158
SEQF3471.1|LS483349.1	CCTyper	CDS	409056	409931	292	+	.	ID=SEQF3471.1|LS483349.1_376_cas;Genome_ID=SEQF3471.1;Feature_type=CDS;Product=Cas Prediction : Cas7_0_IC;coding_strand=+;E-value=4.7e-124;Score=410.1;Coverage_Seq=0.9691780821917808;Coverage_Hmm=0.9964788732394366
SEQF3471.1|LS483349.1	CCTyper	CDS	407121	409052	644	+	.	ID=SEQF3471.1|LS483349.1_375_cas;Genome_ID=SEQF3471.1;Feature_type=CDS;Product=Cas Prediction : Cas8c_0_CAS-I-C;coding_strand=+;E-value=1.8999999999999998e-107;Score=357.0;Coverage_Seq=0.9332298136645962;Coverage_Hmm=0.9600694444444444
SEQF3471.1|LS483349.1	CCTyper	CDS	735137	739174	1346	+	.	ID=SEQF3471.1|LS483349.1_695_cas;Genome_ID=SEQF3471.1;Feature_type=CDS;Product=Cas Prediction : Cas9_1_II;coding_strand=+;E-value=0.0;Score=1275.0;Coverage_Seq=0.9955423476968797;Coverage_Hmm=0.9991071428571429
SEQF3471.1|LS483349.1	CCTyper	CDS	740371	741033	221	+	.	ID=SEQF3471.1|LS483349.1_698_cas;Genome_ID=SEQF3471.1;Feature_type=CDS;Product=Cas Prediction : Csn2_1_CAS-II-A;coding_strand=+;E-value=9.9e-107;Score=352.3;Coverage_Seq=0.9819004524886877;Coverage_Hmm=0.9954128440366973
SEQF3471.1|LS483349.1	CCTyper	CDS	402650	403624	325	+	.	ID=SEQF3471.1|LS483349.1_372_cas;Genome_ID=SEQF3471.1;Feature_type=CDS;Product=Cas Prediction : WYL_3_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=4.7e-14;Score=49.6;Coverage_Seq=0.5169230769230769;Coverage_Hmm=0.8837209302325582