SEQF3556.1|ATAA01000014.1	CCTyper	repeat_region	40049	41015	967	+	.	ID=SEQF3556.1|ATAA01000014.1_1;Genome_ID=SEQF3556.1;Note=Predictor:CCtyper;Start:40049;End:41015;Consensus_Repeat:GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Number_of_Repeats:15;Repeat_Length:36;Average_Spacer_Length:30.5;Repeat_Identity:87.6;Spacer_Identity:40.4;Spacer_Length_Sem:0.5;Trusted:True;Cas_Type_Prediction: II-C;Cas_Subtype_Prediction:II-C;Subtype_Probability:0.946;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3556.1|ATAA01000014.1	CCTyper	direct_repeat	40049	40084	36	+	.	ID=SEQF3556.1|ATAA01000014.1_1_REPEAT1;Parent=SEQF3556.1|ATAA01000014.1_1;Note=TAGTATTGACGAGTGAGATTTAAGGCTTTATAATGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3556.1|ATAA01000014.1	CCTyper	binding_site	40085	40121	37	+	.	ID=SEQF3556.1|ATAA01000014.1_1_SPACER1;Parent=SEQF3556.1|ATAA01000014.1_1;Note=TTTTGAGGGAACAAAAATCAAAATTGACGAATTTGAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3556.1|ATAA01000014.1	CCTyper	direct_repeat	40122	40157	36	+	.	ID=SEQF3556.1|ATAA01000014.1_1_REPEAT2;Parent=SEQF3556.1|ATAA01000014.1_1;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3556.1|ATAA01000014.1	CCTyper	binding_site	40158	40187	30	+	.	ID=SEQF3556.1|ATAA01000014.1_1_SPACER2;Parent=SEQF3556.1|ATAA01000014.1_1;Note=GAAGAATTAGTCTAGTAAGGCCTTCAATGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3556.1|ATAA01000014.1	CCTyper	direct_repeat	40188	40223	36	+	.	ID=SEQF3556.1|ATAA01000014.1_1_REPEAT3;Parent=SEQF3556.1|ATAA01000014.1_1;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3556.1|ATAA01000014.1	CCTyper	binding_site	40224	40253	30	+	.	ID=SEQF3556.1|ATAA01000014.1_1_SPACER3;Parent=SEQF3556.1|ATAA01000014.1_1;Note=TAACAACCATTGGATCTTCCTGATTTGTCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3556.1|ATAA01000014.1	CCTyper	direct_repeat	40254	40289	36	+	.	ID=SEQF3556.1|ATAA01000014.1_1_REPEAT4;Parent=SEQF3556.1|ATAA01000014.1_1;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3556.1|ATAA01000014.1	CCTyper	binding_site	40290	40319	30	+	.	ID=SEQF3556.1|ATAA01000014.1_1_SPACER4;Parent=SEQF3556.1|ATAA01000014.1_1;Note=TGAAGCAAATGCTTGTCAGTCGCGGTTATG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3556.1|ATAA01000014.1	CCTyper	direct_repeat	40320	40355	36	+	.	ID=SEQF3556.1|ATAA01000014.1_1_REPEAT5;Parent=SEQF3556.1|ATAA01000014.1_1;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3556.1|ATAA01000014.1	CCTyper	binding_site	40356	40385	30	+	.	ID=SEQF3556.1|ATAA01000014.1_1_SPACER5;Parent=SEQF3556.1|ATAA01000014.1_1;Note=TTGGAACCCCCAAAGTATATATAAAGTAAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3556.1|ATAA01000014.1	CCTyper	direct_repeat	40386	40421	36	+	.	ID=SEQF3556.1|ATAA01000014.1_1_REPEAT6;Parent=SEQF3556.1|ATAA01000014.1_1;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3556.1|ATAA01000014.1	CCTyper	binding_site	40422	40450	29	+	.	ID=SEQF3556.1|ATAA01000014.1_1_SPACER6;Parent=SEQF3556.1|ATAA01000014.1_1;Note=CTTTCCCAAGATTTACAACAACAGACGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3556.1|ATAA01000014.1	CCTyper	direct_repeat	40451	40486	36	+	.	ID=SEQF3556.1|ATAA01000014.1_1_REPEAT7;Parent=SEQF3556.1|ATAA01000014.1_1;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3556.1|ATAA01000014.1	CCTyper	binding_site	40487	40516	30	+	.	ID=SEQF3556.1|ATAA01000014.1_1_SPACER7;Parent=SEQF3556.1|ATAA01000014.1_1;Note=CGGTTGCTTATGGCTTTAAACGACAGGAAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3556.1|ATAA01000014.1	CCTyper	direct_repeat	40517	40552	36	+	.	ID=SEQF3556.1|ATAA01000014.1_1_REPEAT8;Parent=SEQF3556.1|ATAA01000014.1_1;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3556.1|ATAA01000014.1	CCTyper	binding_site	40553	40582	30	+	.	ID=SEQF3556.1|ATAA01000014.1_1_SPACER8;Parent=SEQF3556.1|ATAA01000014.1_1;Note=GATTAGACACCTAAATTATATCAAAAGCTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3556.1|ATAA01000014.1	CCTyper	direct_repeat	40583	40618	36	+	.	ID=SEQF3556.1|ATAA01000014.1_1_REPEAT9;Parent=SEQF3556.1|ATAA01000014.1_1;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3556.1|ATAA01000014.1	CCTyper	binding_site	40619	40648	30	+	.	ID=SEQF3556.1|ATAA01000014.1_1_SPACER9;Parent=SEQF3556.1|ATAA01000014.1_1;Note=GCCGAGGCTCTAGACCGTGAGAGCTACAAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3556.1|ATAA01000014.1	CCTyper	direct_repeat	40649	40684	36	+	.	ID=SEQF3556.1|ATAA01000014.1_1_REPEAT10;Parent=SEQF3556.1|ATAA01000014.1_1;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3556.1|ATAA01000014.1	CCTyper	binding_site	40685	40714	30	+	.	ID=SEQF3556.1|ATAA01000014.1_1_SPACER10;Parent=SEQF3556.1|ATAA01000014.1_1;Note=ATTTTTTGAAAAAGGAGCGGTAAACCGACA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3556.1|ATAA01000014.1	CCTyper	direct_repeat	40715	40750	36	+	.	ID=SEQF3556.1|ATAA01000014.1_1_REPEAT11;Parent=SEQF3556.1|ATAA01000014.1_1;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3556.1|ATAA01000014.1	CCTyper	binding_site	40751	40780	30	+	.	ID=SEQF3556.1|ATAA01000014.1_1_SPACER11;Parent=SEQF3556.1|ATAA01000014.1_1;Note=GTCTCATCATACTAATCGCCCTAGTTATCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3556.1|ATAA01000014.1	CCTyper	direct_repeat	40781	40816	36	+	.	ID=SEQF3556.1|ATAA01000014.1_1_REPEAT12;Parent=SEQF3556.1|ATAA01000014.1_1;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3556.1|ATAA01000014.1	CCTyper	binding_site	40817	40847	31	+	.	ID=SEQF3556.1|ATAA01000014.1_1_SPACER12;Parent=SEQF3556.1|ATAA01000014.1_1;Note=CCGGCCATAAATGTATCGGATTTTGTGAGAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3556.1|ATAA01000014.1	CCTyper	direct_repeat	40848	40883	36	+	.	ID=SEQF3556.1|ATAA01000014.1_1_REPEAT13;Parent=SEQF3556.1|ATAA01000014.1_1;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3556.1|ATAA01000014.1	CCTyper	binding_site	40884	40913	30	+	.	ID=SEQF3556.1|ATAA01000014.1_1_SPACER13;Parent=SEQF3556.1|ATAA01000014.1_1;Note=CAAAACCTAGTTTTGACCTTTAACCAACAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3556.1|ATAA01000014.1	CCTyper	direct_repeat	40914	40949	36	+	.	ID=SEQF3556.1|ATAA01000014.1_1_REPEAT14;Parent=SEQF3556.1|ATAA01000014.1_1;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3556.1|ATAA01000014.1	CCTyper	binding_site	40950	40979	30	+	.	ID=SEQF3556.1|ATAA01000014.1_1_SPACER14;Parent=SEQF3556.1|ATAA01000014.1_1;Note=AATTGTCATAGTTCTCTTGTGCGTTGGATA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3556.1|ATAA01000014.1	CCTyper	direct_repeat	40980	41015	36	+	.	ID=SEQF3556.1|ATAA01000014.1_1_REPEAT15;Parent=SEQF3556.1|ATAA01000014.1_1;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3556.1|ATAA01000014.1	CCTyper	OPERON	32466	43213	10748	+	.	ID=SEQF3556.1|ATAA01000014.1@2;Genome_ID=SEQF3556.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Csm2_0_IIIA,Cas9_0_II,Cas9_0_II,Cas1_4_CAS-I-II-III-IV-V-VI,Cas2_5_CAS-I-II-III-IV-V-VI,Csn2_2_CAS-II-A,Cas3HD_0_CAS-I;Positions=36,40,41,42,43,45,47;E-values=8.40e-05,9.20e-110,4.70e-102,2.00e-98,1.20e-31,1.30e-116,2.10e-03;CoverageSeq=0.629,0.989,0.552,0.78,0.954,0.987,0.313;CoverageHMM=0.479,0.571,0.43,0.996,0.888,0.88,0.433;Strand_Interference=1;Strand_Adaptation=1
SEQF3556.1|ATAA01000014.1	CCTyper	CDS	37623	38684	354	+	.	ID=SEQF3556.1|ATAA01000014.1_42_cas;Genome_ID=SEQF3556.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=2e-98;Score=325.8;Coverage_Seq=0.7796610169491526;Coverage_Hmm=0.9963636363636363
SEQF3556.1|ATAA01000014.1	CCTyper	CDS	38689	39012	108	+	.	ID=SEQF3556.1|ATAA01000014.1_43_cas;Genome_ID=SEQF3556.1;Feature_type=CDS;Product=Cas Prediction : Cas2_5_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.2e-31;Score=106.2;Coverage_Seq=0.9537037037037037;Coverage_Hmm=0.8879310344827587
SEQF3556.1|ATAA01000014.1	CCTyper	CDS	41909	43213	435	-	.	ID=SEQF3556.1|ATAA01000014.1_47_cas;Genome_ID=SEQF3556.1;Feature_type=CDS;Product=Cas Prediction : Cas3HD_0_CAS-I;coding_strand=-;E-value=0.0021;Score=14.8;Coverage_Seq=0.31264367816091954;Coverage_Hmm=0.43349753694581283
SEQF3556.1|ATAA01000014.1	CCTyper	CDS	34227	35600	458	+	.	ID=SEQF3556.1|ATAA01000014.1_40_cas;Genome_ID=SEQF3556.1;Feature_type=CDS;Product=Cas Prediction : Cas9_0_II;coding_strand=+;E-value=9.2e-110;Score=365.1;Coverage_Seq=0.9890829694323144;Coverage_Hmm=0.5710843373493976
SEQF3556.1|ATAA01000014.1	CCTyper	CDS	35665	37599	645	+	.	ID=SEQF3556.1|ATAA01000014.1_41_cas;Genome_ID=SEQF3556.1;Feature_type=CDS;Product=Cas Prediction : Cas9_0_II;coding_strand=+;E-value=4.7e-102;Score=339.6;Coverage_Seq=0.5519379844961241;Coverage_Hmm=0.43012048192771085
SEQF3556.1|ATAA01000014.1	CCTyper	CDS	32466	32732	89	+	.	ID=SEQF3556.1|ATAA01000014.1_36_cas;Genome_ID=SEQF3556.1;Feature_type=CDS;Product=Cas Prediction : Csm2_0_IIIA;coding_strand=+;E-value=8.4e-05;Score=20.3;Coverage_Seq=0.6292134831460674;Coverage_Hmm=0.4791666666666667
SEQF3556.1|ATAA01000014.1	CCTyper	CDS	39125	40051	309	+	.	ID=SEQF3556.1|ATAA01000014.1_45_cas;Genome_ID=SEQF3556.1;Feature_type=CDS;Product=Cas Prediction : Csn2_2_CAS-II-A;coding_strand=+;E-value=1.3e-116;Score=386.2;Coverage_Seq=0.9870550161812298;Coverage_Hmm=0.880466472303207