SEQF3577.1|JUQO01000100.1	CCTyper	repeat_region	8787	9190	404	+	.	ID=SEQF3577.1|JUQO01000100.1-1_1;Genome_ID=SEQF3577.1;Note=Predictor:CCtyper;Start:8787;End:9190;Consensus_Repeat:GTTTCCGGCCCCTCTCGAGGTAGATAGGTTCTTATAC;Number_of_Repeats:6;Repeat_Length:33.5;Average_Spacer_Length:40.6;Repeat_Identity:69.5;Spacer_Identity:42.4;Spacer_Length_Sem:3.5;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.978;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3577.1|JUQO01000100.1	CCTyper	direct_repeat	8787	8816	30	+	.	ID=SEQF3577.1|JUQO01000100.1-1_1_REPEAT1;Parent=SEQF3577.1|JUQO01000100.1-1_1;Note=CCCCTCTCGAGGTAGATAAGGTAGCTATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3577.1|JUQO01000100.1	CCTyper	binding_site	8817	8852	36	+	.	ID=SEQF3577.1|JUQO01000100.1-1_1_SPACER1;Parent=SEQF3577.1|JUQO01000100.1-1_1;Note=AAATCGAGCAAGATGTCGAGACTCATTGCGAAATCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3577.1|JUQO01000100.1	CCTyper	direct_repeat	8853	8889	37	+	.	ID=SEQF3577.1|JUQO01000100.1-1_1_REPEAT2;Parent=SEQF3577.1|JUQO01000100.1-1_1;Note=GTTTCCGGCCCCTCCCGAGGTAGATAGGTAGCTATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3577.1|JUQO01000100.1	CCTyper	binding_site	8890	8930	41	+	.	ID=SEQF3577.1|JUQO01000100.1-1_1_SPACER2;Parent=SEQF3577.1|JUQO01000100.1-1_1;Note=TTTCGAAGAGGTCACAGAATGAAACGATTCATAGCAATCTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3577.1|JUQO01000100.1	CCTyper	direct_repeat	8931	8967	37	+	.	ID=SEQF3577.1|JUQO01000100.1-1_1_REPEAT3;Parent=SEQF3577.1|JUQO01000100.1-1_1;Note=GTTTCCGGCCCCTCTCGAGGTAGATAGGTTCTTATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3577.1|JUQO01000100.1	CCTyper	binding_site	8968	9001	34	+	.	ID=SEQF3577.1|JUQO01000100.1-1_1_SPACER3;Parent=SEQF3577.1|JUQO01000100.1-1_1;Note=CTTGGTTCTCGTTTTGAAGCTTGCCTTTTGGGTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3577.1|JUQO01000100.1	CCTyper	direct_repeat	9002	9038	37	+	.	ID=SEQF3577.1|JUQO01000100.1-1_1_REPEAT4;Parent=SEQF3577.1|JUQO01000100.1-1_1;Note=GTTTCCGGCCCCTCGCGAGGTAGAAAGGCTCTTATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3577.1|JUQO01000100.1	CCTyper	binding_site	9039	9076	38	+	.	ID=SEQF3577.1|JUQO01000100.1-1_1_SPACER4;Parent=SEQF3577.1|JUQO01000100.1-1_1;Note=GTATTGTAGAAAATTGATTGTTGTGGAGTAAATAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3577.1|JUQO01000100.1	CCTyper	direct_repeat	9077	9099	23	+	.	ID=SEQF3577.1|JUQO01000100.1-1_1_REPEAT5;Parent=SEQF3577.1|JUQO01000100.1-1_1;Note=GTTTCCGGCCCCTCGCGAGGTAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3577.1|JUQO01000100.1	CCTyper	binding_site	9100	9153	54	+	.	ID=SEQF3577.1|JUQO01000100.1-1_1_SPACER5;Parent=SEQF3577.1|JUQO01000100.1-1_1;Note=AGTGGATGCTATGCACAAAGGTCTTGATGTTTCTATTTATGCAAAACCTGAATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3577.1|JUQO01000100.1	CCTyper	direct_repeat	9154	9190	37	+	.	ID=SEQF3577.1|JUQO01000100.1-1_1_REPEAT6;Parent=SEQF3577.1|JUQO01000100.1-1_1;Note=GTTTCCGCCCCCTCTCGAGGTAGATAAGTAGCTATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3577.1|JUQO01000100.1	CCTyper	repeat_region	9307	10004	698	+	.	ID=SEQF3577.1|JUQO01000100.1-1_2;Genome_ID=SEQF3577.1;Note=Predictor:CCtyper;Start:9307;End:10004;Consensus_Repeat:GTTTCCGTCCCCTCTCGAGGCAGATAGGTTCTTATAC;Number_of_Repeats:10;Repeat_Length:32.9;Average_Spacer_Length:41.0;Repeat_Identity:72.4;Spacer_Identity:43.6;Spacer_Length_Sem:2.5;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.988;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3577.1|JUQO01000100.1	CCTyper	direct_repeat	9307	9343	37	+	.	ID=SEQF3577.1|JUQO01000100.1-1_2_REPEAT1;Parent=SEQF3577.1|JUQO01000100.1-1_2;Note=GTTTCCGGCCCCTCTTGAGGTAGATAGGTTCTTATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3577.1|JUQO01000100.1	CCTyper	binding_site	9344	9376	33	+	.	ID=SEQF3577.1|JUQO01000100.1-1_2_SPACER1;Parent=SEQF3577.1|JUQO01000100.1-1_2;Note=GGAACTATACGAAGTATTTGATTTGAAAGACGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3577.1|JUQO01000100.1	CCTyper	direct_repeat	9377	9413	37	+	.	ID=SEQF3577.1|JUQO01000100.1-1_2_REPEAT2;Parent=SEQF3577.1|JUQO01000100.1-1_2;Note=GTTTCCGTCCCCTGCCGAGGTGAATAGGATGTTTTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3577.1|JUQO01000100.1	CCTyper	binding_site	9414	9448	35	+	.	ID=SEQF3577.1|JUQO01000100.1-1_2_SPACER2;Parent=SEQF3577.1|JUQO01000100.1-1_2;Note=GCACAAAAAACTTCTATTATCAACTGCTGCACTAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3577.1|JUQO01000100.1	CCTyper	direct_repeat	9449	9483	35	+	.	ID=SEQF3577.1|JUQO01000100.1-1_2_REPEAT3;Parent=SEQF3577.1|JUQO01000100.1-1_2;Note=TTCCGTCCCCTCTCGAGGTAGATAGGTTCTTATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3577.1|JUQO01000100.1	CCTyper	binding_site	9484	9522	39	+	.	ID=SEQF3577.1|JUQO01000100.1-1_2_SPACER3;Parent=SEQF3577.1|JUQO01000100.1-1_2;Note=CAATCTAATGATTACATTAAAAACAATTTTGAAGAACTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3577.1|JUQO01000100.1	CCTyper	direct_repeat	9523	9549	27	+	.	ID=SEQF3577.1|JUQO01000100.1-1_2_REPEAT4;Parent=SEQF3577.1|JUQO01000100.1-1_2;Note=GTTTCCGTCCCCTCTCTAGGTGAATAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3577.1|JUQO01000100.1	CCTyper	binding_site	9550	9594	45	+	.	ID=SEQF3577.1|JUQO01000100.1-1_2_SPACER4;Parent=SEQF3577.1|JUQO01000100.1-1_2;Note=GATGTTCTACGATAAAGTGAAAGTTGGAGATGAGGTGATGCTATG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3577.1|JUQO01000100.1	CCTyper	direct_repeat	9595	9617	23	+	.	ID=SEQF3577.1|JUQO01000100.1-1_2_REPEAT5;Parent=SEQF3577.1|JUQO01000100.1-1_2;Note=GTTTCCGTCCCCTGCCGAGGTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3577.1|JUQO01000100.1	CCTyper	binding_site	9618	9670	53	+	.	ID=SEQF3577.1|JUQO01000100.1-1_2_SPACER5;Parent=SEQF3577.1|JUQO01000100.1-1_2;Note=GTTGAGTATTTTACAGCAATAAGTTCGGTGAGTTATGCGCAGGCTATCTCAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3577.1|JUQO01000100.1	CCTyper	direct_repeat	9671	9692	22	+	.	ID=SEQF3577.1|JUQO01000100.1-1_2_REPEAT6;Parent=SEQF3577.1|JUQO01000100.1-1_2;Note=TTTCCGTCCCCTGCCGAGGTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3577.1|JUQO01000100.1	CCTyper	binding_site	9693	9745	53	+	.	ID=SEQF3577.1|JUQO01000100.1-1_2_SPACER6;Parent=SEQF3577.1|JUQO01000100.1-1_2;Note=ATTGGGTGGTCTAAAAAATTATGACAACATTATTAAAAAGAGATGGAAATAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3577.1|JUQO01000100.1	CCTyper	direct_repeat	9746	9782	37	+	.	ID=SEQF3577.1|JUQO01000100.1-1_2_REPEAT7;Parent=SEQF3577.1|JUQO01000100.1-1_2;Note=GTTTCCGTCCCCTCTCGAGGTAGATAGGTTCTTATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3577.1|JUQO01000100.1	CCTyper	binding_site	9783	9820	38	+	.	ID=SEQF3577.1|JUQO01000100.1-1_2_SPACER7;Parent=SEQF3577.1|JUQO01000100.1-1_2;Note=AAAATGACAAGAATTATTTTAACTGTCGGATGCGTTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3577.1|JUQO01000100.1	CCTyper	direct_repeat	9821	9857	37	+	.	ID=SEQF3577.1|JUQO01000100.1-1_2_REPEAT8;Parent=SEQF3577.1|JUQO01000100.1-1_2;Note=GTTTCCGTCCCCTCTCGAGGCAGATAGGTTCTTATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3577.1|JUQO01000100.1	CCTyper	binding_site	9858	9894	37	+	.	ID=SEQF3577.1|JUQO01000100.1-1_2_SPACER8;Parent=SEQF3577.1|JUQO01000100.1-1_2;Note=AAAAAGAGAACAATGTTCTTAAATTATCTCAATTGAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3577.1|JUQO01000100.1	CCTyper	direct_repeat	9895	9931	37	+	.	ID=SEQF3577.1|JUQO01000100.1-1_2_REPEAT9;Parent=SEQF3577.1|JUQO01000100.1-1_2;Note=GTTTCCGTCCCCTTGCGAGGTAGATAGGTTCTTATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3577.1|JUQO01000100.1	CCTyper	binding_site	9932	9967	36	+	.	ID=SEQF3577.1|JUQO01000100.1-1_2_SPACER9;Parent=SEQF3577.1|JUQO01000100.1-1_2;Note=CGCTGGAGATGAAATTGAAGCAGCAATCAAAAATGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3577.1|JUQO01000100.1	CCTyper	direct_repeat	9968	10004	37	+	.	ID=SEQF3577.1|JUQO01000100.1-1_2_REPEAT10;Parent=SEQF3577.1|JUQO01000100.1-1_2;Note=GTTTCCGTCCCCTCTCGAGGCAGATAGGTTCTTATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3577.1|JUQO01000100.1	CCTyper	OPERON	248	11435	11188	-	.	ID=SEQF3577.1|JUQO01000100.1@1;Genome_ID=SEQF3577.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-A;Complete_Interference=100%;Complete_Adaptation=NA;Best_type=III-A;Best_score=18.0;Genes=Csm6_1_CAS-III,Csm6_1_CAS-III,Csm5gr7_1_CAS-III-A-III-D,Csm4gr5_1_CAS-III-A,Csm3gr7_1_CAS-III-A-III-D,Csm2gr11_7_CAS-III-A,Cas10_1_CAS-III,Cas6_0_CAS-I-II-III-IV-V-VI,Cas2_2_CAS-I-II-III-IV-V-VI,Cas1_0_CAS-I-II-III-IV-V-VI;Positions=1,2,3,4,5,6,7,8,9,10;E-values=8.70e-86,1.20e-71,4.60e-31,3.80e-43,4.60e-72,1.10e-23,6.90e-167,8.80e-28,1.40e-19,1.10e-79;CoverageSeq=0.858,0.84,0.745,0.987,0.919,0.914,0.83,0.791,0.616,0.955;CoverageHMM=0.983,0.908,0.661,0.984,0.981,0.982,1.0,0.912,0.861,0.931;Strand_Interference=-1;Strand_Adaptation=NA
SEQF3577.1|JUQO01000100.1	CCTyper	CDS	5728	7989	754	-	.	ID=SEQF3577.1|JUQO01000100.1_7_cas;Genome_ID=SEQF3577.1;Feature_type=CDS;Product=Cas Prediction : Cas10_1_CAS-III;coding_strand=-;E-value=6.900000000000001e-167;Score=553.7;Coverage_Seq=0.830238726790451;Coverage_Hmm=1.0
SEQF3577.1|JUQO01000100.1	CCTyper	CDS	10503	11435	311	-	.	ID=SEQF3577.1|JUQO01000100.1_10_cas;Genome_ID=SEQF3577.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.1e-79;Score=264.7;Coverage_Seq=0.954983922829582;Coverage_Hmm=0.9305993690851735
SEQF3577.1|JUQO01000100.1	CCTyper	CDS	10093	10428	112	-	.	ID=SEQF3577.1|JUQO01000100.1_9_cas;Genome_ID=SEQF3577.1;Feature_type=CDS;Product=Cas Prediction : Cas2_2_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.4e-19;Score=67.0;Coverage_Seq=0.6160714285714286;Coverage_Hmm=0.8607594936708861
SEQF3577.1|JUQO01000100.1	CCTyper	CDS	7970	8701	244	-	.	ID=SEQF3577.1|JUQO01000100.1_8_cas;Genome_ID=SEQF3577.1;Feature_type=CDS;Product=Cas Prediction : Cas6_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=8.800000000000002e-28;Score=94.9;Coverage_Seq=0.7909836065573771;Coverage_Hmm=0.9123711340206185
SEQF3577.1|JUQO01000100.1	CCTyper	CDS	5344	5727	128	-	.	ID=SEQF3577.1|JUQO01000100.1_6_cas;Genome_ID=SEQF3577.1;Feature_type=CDS;Product=Cas Prediction : Csm2gr11_7_CAS-III-A;coding_strand=-;E-value=1.1e-23;Score=81.2;Coverage_Seq=0.9140625;Coverage_Hmm=0.9818181818181818
SEQF3577.1|JUQO01000100.1	CCTyper	CDS	4685	5347	221	-	.	ID=SEQF3577.1|JUQO01000100.1_5_cas;Genome_ID=SEQF3577.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_1_CAS-III-A-III-D;coding_strand=-;E-value=4.6e-72;Score=239.2;Coverage_Seq=0.918552036199095;Coverage_Hmm=0.9813953488372092
SEQF3577.1|JUQO01000100.1	CCTyper	CDS	3778	4683	302	-	.	ID=SEQF3577.1|JUQO01000100.1_4_cas;Genome_ID=SEQF3577.1;Feature_type=CDS;Product=Cas Prediction : Csm4gr5_1_CAS-III-A;coding_strand=-;E-value=3.8e-43;Score=144.8;Coverage_Seq=0.9867549668874173;Coverage_Hmm=0.9841269841269841
SEQF3577.1|JUQO01000100.1	CCTyper	CDS	2711	3781	357	-	.	ID=SEQF3577.1|JUQO01000100.1_3_cas;Genome_ID=SEQF3577.1;Feature_type=CDS;Product=Cas Prediction : Csm5gr7_1_CAS-III-A-III-D;coding_strand=-;E-value=4.6e-31;Score=105.7;Coverage_Seq=0.7450980392156863;Coverage_Hmm=0.6612466124661247
SEQF3577.1|JUQO01000100.1	CCTyper	CDS	248	1537	430	-	.	ID=SEQF3577.1|JUQO01000100.1_1_cas;Genome_ID=SEQF3577.1;Feature_type=CDS;Product=Cas Prediction : Csm6_1_CAS-III;coding_strand=-;E-value=8.7e-86;Score=284.9;Coverage_Seq=0.858139534883721;Coverage_Hmm=0.9833333333333333
SEQF3577.1|JUQO01000100.1	CCTyper	CDS	1554	2714	387	-	.	ID=SEQF3577.1|JUQO01000100.1_2_cas;Genome_ID=SEQF3577.1;Feature_type=CDS;Product=Cas Prediction : Csm6_1_CAS-III;coding_strand=-;E-value=1.2e-71;Score=238.3;Coverage_Seq=0.8397932816537468;Coverage_Hmm=0.9083333333333333