SEQF3583.1|KQ970828.1	CCTyper	repeat_region	195880	196788	909	+	.	ID=SEQF3583.1|KQ970828.1_1;Genome_ID=SEQF3583.1;Note=Predictor:CCtyper;Start:195880;End:196788;Consensus_Repeat:GTTTCCGGCCCCTCGCGAGGTAGATAGGT;Number_of_Repeats:13;Repeat_Length:29;Average_Spacer_Length:44.3;Repeat_Identity:81.3;Spacer_Identity:48.0;Spacer_Length_Sem:0.6;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.936;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3583.1|KQ970828.1	CCTyper	direct_repeat	195880	195908	29	+	.	ID=SEQF3583.1|KQ970828.1_1_REPEAT1;Parent=SEQF3583.1|KQ970828.1_1;Note=GTTTCCGGCCCCTCGCGAGGTAGATAGGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3583.1|KQ970828.1	CCTyper	binding_site	195909	195952	44	+	.	ID=SEQF3583.1|KQ970828.1_1_SPACER1;Parent=SEQF3583.1|KQ970828.1_1;Note=ATCTATACTGAATCTGCACCTCAAAATGTAACTGCAAACGTAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3583.1|KQ970828.1	CCTyper	direct_repeat	195953	195981	29	+	.	ID=SEQF3583.1|KQ970828.1_1_REPEAT2;Parent=SEQF3583.1|KQ970828.1_1;Note=GTTTTCGGCCCCTTTCGAGGTAAATAGGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3583.1|KQ970828.1	CCTyper	binding_site	195982	196025	44	+	.	ID=SEQF3583.1|KQ970828.1_1_SPACER2;Parent=SEQF3583.1|KQ970828.1_1;Note=TTCACTACAATCGTAGAGATTTTGGCTAAGAACGCAGTAAATGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3583.1|KQ970828.1	CCTyper	direct_repeat	196026	196054	29	+	.	ID=SEQF3583.1|KQ970828.1_1_REPEAT3;Parent=SEQF3583.1|KQ970828.1_1;Note=GTTTCCGTCCCCTCTCGAGCTAGATAGGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3583.1|KQ970828.1	CCTyper	binding_site	196055	196098	44	+	.	ID=SEQF3583.1|KQ970828.1_1_SPACER3;Parent=SEQF3583.1|KQ970828.1_1;Note=ATCTATACTGGTACAAACCGTGGCGGAGAAGTTAACACATTCGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3583.1|KQ970828.1	CCTyper	direct_repeat	196099	196127	29	+	.	ID=SEQF3583.1|KQ970828.1_1_REPEAT4;Parent=SEQF3583.1|KQ970828.1_1;Note=ATTTCCGGCCCCTCTCGAGGTAGATAGGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3583.1|KQ970828.1	CCTyper	binding_site	196128	196170	43	+	.	ID=SEQF3583.1|KQ970828.1_1_SPACER4;Parent=SEQF3583.1|KQ970828.1_1;Note=GTCTATACAAGTTGGTAAAAATGTATCAATCAGCACTCGATAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3583.1|KQ970828.1	CCTyper	direct_repeat	196171	196199	29	+	.	ID=SEQF3583.1|KQ970828.1_1_REPEAT5;Parent=SEQF3583.1|KQ970828.1_1;Note=GTTTCCGGCCCCTCTCGAGGGAGATAGAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3583.1|KQ970828.1	CCTyper	binding_site	196200	196249	50	+	.	ID=SEQF3583.1|KQ970828.1_1_SPACER5;Parent=SEQF3583.1|KQ970828.1_1;Note=ATCTATACTTACCGTAAATTAAAAGGAAATGTCACTATTTTTCAGCCGAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3583.1|KQ970828.1	CCTyper	direct_repeat	196250	196278	29	+	.	ID=SEQF3583.1|KQ970828.1_1_REPEAT6;Parent=SEQF3583.1|KQ970828.1_1;Note=GTTTCCGGCCCCTCTCGAGGCTGATAGGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3583.1|KQ970828.1	CCTyper	binding_site	196279	196322	44	+	.	ID=SEQF3583.1|KQ970828.1_1_SPACER6;Parent=SEQF3583.1|KQ970828.1_1;Note=AGCTATACGAACAACATTGATAGCACAAATACATTTGATAAAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3583.1|KQ970828.1	CCTyper	direct_repeat	196323	196351	29	+	.	ID=SEQF3583.1|KQ970828.1_1_REPEAT7;Parent=SEQF3583.1|KQ970828.1_1;Note=GTTTCCGGCCCCTCGCGAGGTAGATAGGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3583.1|KQ970828.1	CCTyper	binding_site	196352	196396	45	+	.	ID=SEQF3583.1|KQ970828.1_1_SPACER7;Parent=SEQF3583.1|KQ970828.1_1;Note=GTCTATACTAAGGCAAATTGGTGAGCCTCTTGTTTGTGGTACAAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3583.1|KQ970828.1	CCTyper	direct_repeat	196397	196425	29	+	.	ID=SEQF3583.1|KQ970828.1_1_REPEAT8;Parent=SEQF3583.1|KQ970828.1_1;Note=GTTTCCGGCCCCTCGCGAGGTAGATAGGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3583.1|KQ970828.1	CCTyper	binding_site	196426	196469	44	+	.	ID=SEQF3583.1|KQ970828.1_1_SPACER8;Parent=SEQF3583.1|KQ970828.1_1;Note=AGCTATACCTAGTAGATGCAAACTTTAGAGTCAGTAGCGTTAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3583.1|KQ970828.1	CCTyper	direct_repeat	196470	196498	29	+	.	ID=SEQF3583.1|KQ970828.1_1_REPEAT9;Parent=SEQF3583.1|KQ970828.1_1;Note=GTTTCCGGCCCCTCGCGAGGTAGATAGGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3583.1|KQ970828.1	CCTyper	binding_site	196499	196543	45	+	.	ID=SEQF3583.1|KQ970828.1_1_SPACER9;Parent=SEQF3583.1|KQ970828.1_1;Note=ATCTATACAAGCCTACTTGAGTCAGCTATTTGCTAAGCAAGCATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3583.1|KQ970828.1	CCTyper	direct_repeat	196544	196572	29	+	.	ID=SEQF3583.1|KQ970828.1_1_REPEAT10;Parent=SEQF3583.1|KQ970828.1_1;Note=GTTTCCGGCCCCTACCGGGGTAGATAGGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3583.1|KQ970828.1	CCTyper	binding_site	196573	196617	45	+	.	ID=SEQF3583.1|KQ970828.1_1_SPACER10;Parent=SEQF3583.1|KQ970828.1_1;Note=GGCTATACCAAACGGAACTACGAAAGTAGAAGAAAATGGATCTGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3583.1|KQ970828.1	CCTyper	direct_repeat	196618	196646	29	+	.	ID=SEQF3583.1|KQ970828.1_1_REPEAT11;Parent=SEQF3583.1|KQ970828.1_1;Note=GTTTTCGGCCCCTCTCGAGGTAGATAGGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3583.1|KQ970828.1	CCTyper	binding_site	196647	196687	41	+	.	ID=SEQF3583.1|KQ970828.1_1_SPACER11;Parent=SEQF3583.1|KQ970828.1_1;Note=ATCTATACACAAAGGAGATAGAGAGTGAACAAGGCTAAAGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3583.1|KQ970828.1	CCTyper	direct_repeat	196688	196716	29	+	.	ID=SEQF3583.1|KQ970828.1_1_REPEAT12;Parent=SEQF3583.1|KQ970828.1_1;Note=GTTTCCGGCCCCTCTCGAGGTGAATAGGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3583.1|KQ970828.1	CCTyper	binding_site	196717	196759	43	+	.	ID=SEQF3583.1|KQ970828.1_1_SPACER12;Parent=SEQF3583.1|KQ970828.1_1;Note=TGTTTTAAATCTTGTACACGTTCGTAAGAACTGGGCGAGTTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3583.1|KQ970828.1	CCTyper	direct_repeat	196760	196788	29	+	.	ID=SEQF3583.1|KQ970828.1_1_REPEAT13;Parent=SEQF3583.1|KQ970828.1_1;Note=ATTTCCGTCCCCTACCGAGGTGAATAGGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3583.1|KQ970828.1	CCTyper	OPERON	187282	202678	15397	-	.	ID=SEQF3583.1|KQ970828.1@6;Genome_ID=SEQF3583.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-A;Complete_Interference=80%;Complete_Adaptation=NA;Best_type=III-A;Best_score=21.0;Genes=Csm6_3_CAS-III,Csm6_1_CAS-III,Csm6_1_CAS-III,Csm4_0_IIIA,Csm4gr5_1_CAS-III-A,Csm3gr7_1_CAS-III-A-III-D,Csm2gr11_7_CAS-III-A,Cas10_1_CAS-III,Cas6_0_CAS-I-II-III-IV-V-VI,Cas2_2_CAS-I-II-III-IV-V-VI,Cas1_0_CAS-I-II-III-IV-V-VI,AbiEii_0_CAS-III;Positions=198,199,201,203,204,205,206,207,208,210,211,215;E-values=1.00e-39,2.80e-34,2.10e-66,9.80e-24,1.80e-16,6.00e-69,1.40e-23,2.00e-164,1.20e-27,1.30e-19,1.80e-81,1.20e-04;CoverageSeq=0.86,0.656,0.747,0.924,0.829,0.919,0.914,0.81,0.791,0.616,0.946,0.316;CoverageHMM=0.495,0.397,0.664,0.414,0.397,0.981,0.982,1.0,0.912,0.861,0.994,0.415;Strand_Interference=-1;Strand_Adaptation=NA
SEQF3583.1|KQ970828.1	CCTyper	CDS	201521	202678	386	-	.	ID=SEQF3583.1|KQ970828.1_215_cas;Genome_ID=SEQF3583.1;Feature_type=CDS;Product=Cas Prediction : AbiEii_0_CAS-III;coding_strand=-;E-value=0.00012;Score=18.8;Coverage_Seq=0.3160621761658031;Coverage_Hmm=0.4154929577464789
SEQF3583.1|KQ970828.1	CCTyper	CDS	192717	195011	765	-	.	ID=SEQF3583.1|KQ970828.1_207_cas;Genome_ID=SEQF3583.1;Feature_type=CDS;Product=Cas Prediction : Cas10_1_CAS-III;coding_strand=-;E-value=2e-164;Score=545.8;Coverage_Seq=0.8104575163398693;Coverage_Hmm=1.0
SEQF3583.1|KQ970828.1	CCTyper	CDS	197759	198766	336	-	.	ID=SEQF3583.1|KQ970828.1_211_cas;Genome_ID=SEQF3583.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.8000000000000002e-81;Score=270.8;Coverage_Seq=0.9464285714285714;Coverage_Hmm=0.9936908517350158
SEQF3583.1|KQ970828.1	CCTyper	CDS	197424	197759	112	-	.	ID=SEQF3583.1|KQ970828.1_210_cas;Genome_ID=SEQF3583.1;Feature_type=CDS;Product=Cas Prediction : Cas2_2_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.3e-19;Score=67.3;Coverage_Seq=0.6160714285714286;Coverage_Hmm=0.8607594936708861
SEQF3583.1|KQ970828.1	CCTyper	CDS	194992	195723	244	-	.	ID=SEQF3583.1|KQ970828.1_208_cas;Genome_ID=SEQF3583.1;Feature_type=CDS;Product=Cas Prediction : Cas6_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.2e-27;Score=94.8;Coverage_Seq=0.7909836065573771;Coverage_Hmm=0.9123711340206185
SEQF3583.1|KQ970828.1	CCTyper	CDS	192333	192716	128	-	.	ID=SEQF3583.1|KQ970828.1_206_cas;Genome_ID=SEQF3583.1;Feature_type=CDS;Product=Cas Prediction : Csm2gr11_7_CAS-III-A;coding_strand=-;E-value=1.4000000000000002e-23;Score=81.2;Coverage_Seq=0.9140625;Coverage_Hmm=0.9818181818181818
SEQF3583.1|KQ970828.1	CCTyper	CDS	191671	192336	222	-	.	ID=SEQF3583.1|KQ970828.1_205_cas;Genome_ID=SEQF3583.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_1_CAS-III-A-III-D;coding_strand=-;E-value=6e-69;Score=229.2;Coverage_Seq=0.918918918918919;Coverage_Hmm=0.9813953488372092
SEQF3583.1|KQ970828.1	CCTyper	CDS	190765	191199	145	-	.	ID=SEQF3583.1|KQ970828.1_203_cas;Genome_ID=SEQF3583.1;Feature_type=CDS;Product=Cas Prediction : Csm4_0_IIIA;coding_strand=-;E-value=9.799999999999999e-24;Score=81.3;Coverage_Seq=0.9241379310344827;Coverage_Hmm=0.4139072847682119
SEQF3583.1|KQ970828.1	CCTyper	CDS	191196	191669	158	-	.	ID=SEQF3583.1|KQ970828.1_204_cas;Genome_ID=SEQF3583.1;Feature_type=CDS;Product=Cas Prediction : Csm4gr5_1_CAS-III-A;coding_strand=-;E-value=1.8e-16;Score=57.4;Coverage_Seq=0.8291139240506329;Coverage_Hmm=0.3968253968253968
SEQF3583.1|KQ970828.1	CCTyper	CDS	187983	188645	221	-	.	ID=SEQF3583.1|KQ970828.1_199_cas;Genome_ID=SEQF3583.1;Feature_type=CDS;Product=Cas Prediction : Csm6_1_CAS-III;coding_strand=-;E-value=2.8e-34;Score=115.7;Coverage_Seq=0.6561085972850679;Coverage_Hmm=0.3972222222222222
SEQF3583.1|KQ970828.1	CCTyper	CDS	188850	189821	324	-	.	ID=SEQF3583.1|KQ970828.1_201_cas;Genome_ID=SEQF3583.1;Feature_type=CDS;Product=Cas Prediction : Csm6_1_CAS-III;coding_strand=-;E-value=2.1e-66;Score=221.4;Coverage_Seq=0.7469135802469136;Coverage_Hmm=0.6638888888888889
SEQF3583.1|KQ970828.1	CCTyper	CDS	187282	187923	214	-	.	ID=SEQF3583.1|KQ970828.1_198_cas;Genome_ID=SEQF3583.1;Feature_type=CDS;Product=Cas Prediction : Csm6_3_CAS-III;coding_strand=-;E-value=1.0000000000000001e-39;Score=133.7;Coverage_Seq=0.8598130841121495;Coverage_Hmm=0.49476439790575916