SEQF3610.1|RJNV01000002.1	CCTyper	repeat_region	66569	67971	1403	+	.	ID=SEQF3610.1|RJNV01000002.1_1;Genome_ID=SEQF3610.1;Note=Predictor:CCtyper;Start:66569;End:67971;Consensus_Repeat:GTTTCCGGCCCCTCTCGAGGTAGATAGG;Number_of_Repeats:20;Repeat_Length:28;Average_Spacer_Length:44.4;Repeat_Identity:81.6;Spacer_Identity:47.1;Spacer_Length_Sem:0.6;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.967;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	direct_repeat	66569	66596	28	+	.	ID=SEQF3610.1|RJNV01000002.1_1_REPEAT1;Parent=SEQF3610.1|RJNV01000002.1_1;Note=GAAACTGTCCCCTCGCGAGGTAGATAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	binding_site	66597	66645	49	+	.	ID=SEQF3610.1|RJNV01000002.1_1_SPACER1;Parent=SEQF3610.1|RJNV01000002.1_1;Note=GATCTATACTTCTAAACGCTTTGAAACTAACAACCCAATGGGGATTTTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	direct_repeat	66646	66673	28	+	.	ID=SEQF3610.1|RJNV01000002.1_1_REPEAT2;Parent=SEQF3610.1|RJNV01000002.1_1;Note=GTTTCCGGCCCCTCTCGAGGTAGATAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	binding_site	66674	66718	45	+	.	ID=SEQF3610.1|RJNV01000002.1_1_SPACER2;Parent=SEQF3610.1|RJNV01000002.1_1;Note=TATCTATACAGAAAATCCAACCTTTACAACCGAACCAGACGGGCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	direct_repeat	66719	66746	28	+	.	ID=SEQF3610.1|RJNV01000002.1_1_REPEAT3;Parent=SEQF3610.1|RJNV01000002.1_1;Note=GTTTCCGGCCCCTTTCGAGGTGGATAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	binding_site	66747	66793	47	+	.	ID=SEQF3610.1|RJNV01000002.1_1_SPACER3;Parent=SEQF3610.1|RJNV01000002.1_1;Note=GAGCTATACAATTTCCCTTGGTCTAATGGATATGACAGTGGATTTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	direct_repeat	66794	66821	28	+	.	ID=SEQF3610.1|RJNV01000002.1_1_REPEAT4;Parent=SEQF3610.1|RJNV01000002.1_1;Note=GTTTCCGGCCCCTCGCGAGGTAGATAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	binding_site	66822	66865	44	+	.	ID=SEQF3610.1|RJNV01000002.1_1_SPACER4;Parent=SEQF3610.1|RJNV01000002.1_1;Note=TAGCTATACGTGTGTGACGGACAAGAAATTCAAATTGGCGAATA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	direct_repeat	66866	66893	28	+	.	ID=SEQF3610.1|RJNV01000002.1_1_REPEAT5;Parent=SEQF3610.1|RJNV01000002.1_1;Note=GTTTCCGGCCTCTCGCGAGGTGGATAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	binding_site	66894	66936	43	+	.	ID=SEQF3610.1|RJNV01000002.1_1_SPACER5;Parent=SEQF3610.1|RJNV01000002.1_1;Note=TGTCTATACTTGCTTATGGGACAACTTACAAGGAGCTTGTCGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	direct_repeat	66937	66964	28	+	.	ID=SEQF3610.1|RJNV01000002.1_1_REPEAT6;Parent=SEQF3610.1|RJNV01000002.1_1;Note=GTTTCCGGCCCCTCGCGAGGTAGATTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	binding_site	66965	67008	44	+	.	ID=SEQF3610.1|RJNV01000002.1_1_SPACER6;Parent=SEQF3610.1|RJNV01000002.1_1;Note=GAGCTATACCTTGGAGTACAGGGAACGTTTGACGCTGACTTCTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	direct_repeat	67009	67036	28	+	.	ID=SEQF3610.1|RJNV01000002.1_1_REPEAT7;Parent=SEQF3610.1|RJNV01000002.1_1;Note=GTTTCCGGCCCCTCGCGAGGTAGATAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	binding_site	67037	67084	48	+	.	ID=SEQF3610.1|RJNV01000002.1_1_SPACER7;Parent=SEQF3610.1|RJNV01000002.1_1;Note=TATCTATACTCTAGATATGCTTCTTGCTAACGCTTTCAACATTGACAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	direct_repeat	67085	67112	28	+	.	ID=SEQF3610.1|RJNV01000002.1_1_REPEAT8;Parent=SEQF3610.1|RJNV01000002.1_1;Note=GTTTTCGGCCCCTCGCGAGGTAGATAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	binding_site	67113	67157	45	+	.	ID=SEQF3610.1|RJNV01000002.1_1_SPACER8;Parent=SEQF3610.1|RJNV01000002.1_1;Note=TATCTATACGTTTGAGTCATACGATTTAGAGTTCGTTTCATTTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	direct_repeat	67158	67185	28	+	.	ID=SEQF3610.1|RJNV01000002.1_1_REPEAT9;Parent=SEQF3610.1|RJNV01000002.1_1;Note=GTTTCCGGCCCCTCTCGAGGTAGATAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	binding_site	67186	67230	45	+	.	ID=SEQF3610.1|RJNV01000002.1_1_SPACER9;Parent=SEQF3610.1|RJNV01000002.1_1;Note=TAGCTATACGGAACGTATGACAAGAAAAGCGAGCGTTGGTACATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	direct_repeat	67231	67258	28	+	.	ID=SEQF3610.1|RJNV01000002.1_1_REPEAT10;Parent=SEQF3610.1|RJNV01000002.1_1;Note=GTTTCCGTCCCTTCTCGAGGTAGATAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	binding_site	67259	67305	47	+	.	ID=SEQF3610.1|RJNV01000002.1_1_SPACER10;Parent=SEQF3610.1|RJNV01000002.1_1;Note=GAGCTATACAATATCAACGAAACTAAAACTGTTACACCACACTCTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	direct_repeat	67306	67333	28	+	.	ID=SEQF3610.1|RJNV01000002.1_1_REPEAT11;Parent=SEQF3610.1|RJNV01000002.1_1;Note=GTTTCCGGCCCCTCTCGAGGTAGATAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	binding_site	67334	67376	43	+	.	ID=SEQF3610.1|RJNV01000002.1_1_SPACER11;Parent=SEQF3610.1|RJNV01000002.1_1;Note=TGGCTATACGAGGATTTGGGATGATTCCAAAATTTAGAGCGTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	direct_repeat	67377	67404	28	+	.	ID=SEQF3610.1|RJNV01000002.1_1_REPEAT12;Parent=SEQF3610.1|RJNV01000002.1_1;Note=GTTTCCGGCCTCTCGCGAGGTAGATAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	binding_site	67405	67447	43	+	.	ID=SEQF3610.1|RJNV01000002.1_1_SPACER12;Parent=SEQF3610.1|RJNV01000002.1_1;Note=TGGCTATACAAGGGGTAATCCATATTGAAAATGGTATCTTCTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	direct_repeat	67448	67475	28	+	.	ID=SEQF3610.1|RJNV01000002.1_1_REPEAT13;Parent=SEQF3610.1|RJNV01000002.1_1;Note=TTTTCCGGCCCCTCTCGAGGTAGATAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	binding_site	67476	67519	44	+	.	ID=SEQF3610.1|RJNV01000002.1_1_SPACER13;Parent=SEQF3610.1|RJNV01000002.1_1;Note=TATCTATACGCCGTAGGAACTATTGTTACTGCAGTTGCACTATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	direct_repeat	67520	67547	28	+	.	ID=SEQF3610.1|RJNV01000002.1_1_REPEAT14;Parent=SEQF3610.1|RJNV01000002.1_1;Note=GTTTCCGGCCCCTCCCGAGGTAAATAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	binding_site	67548	67587	40	+	.	ID=SEQF3610.1|RJNV01000002.1_1_SPACER14;Parent=SEQF3610.1|RJNV01000002.1_1;Note=GGGCTATACTCAGTGTTCATATTATTTTGGCCAAAATAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	direct_repeat	67588	67615	28	+	.	ID=SEQF3610.1|RJNV01000002.1_1_REPEAT15;Parent=SEQF3610.1|RJNV01000002.1_1;Note=GTTTCCGGCCCCTCTCGAGGTAGATAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	binding_site	67616	67661	46	+	.	ID=SEQF3610.1|RJNV01000002.1_1_SPACER15;Parent=SEQF3610.1|RJNV01000002.1_1;Note=TATCTATACATGGTGAAGCCAAAGCCAATAAGATCAAGTCAGACTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	direct_repeat	67662	67689	28	+	.	ID=SEQF3610.1|RJNV01000002.1_1_REPEAT16;Parent=SEQF3610.1|RJNV01000002.1_1;Note=GTTTCCGTCCCCTCTCGAGGTAGATAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	binding_site	67690	67732	43	+	.	ID=SEQF3610.1|RJNV01000002.1_1_SPACER16;Parent=SEQF3610.1|RJNV01000002.1_1;Note=TATCTATACGAACAATTCGAGAACAAAACCCTAAGGTAAACCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	direct_repeat	67733	67760	28	+	.	ID=SEQF3610.1|RJNV01000002.1_1_REPEAT17;Parent=SEQF3610.1|RJNV01000002.1_1;Note=GTTTCCGTCCCCTCTCGAGGTAGATAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	binding_site	67761	67804	44	+	.	ID=SEQF3610.1|RJNV01000002.1_1_SPACER17;Parent=SEQF3610.1|RJNV01000002.1_1;Note=TATCTATACAAAATGCAACTATTTCAATAAGCGCAAAGCTTTAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	direct_repeat	67805	67832	28	+	.	ID=SEQF3610.1|RJNV01000002.1_1_REPEAT18;Parent=SEQF3610.1|RJNV01000002.1_1;Note=GTTTCCGGCCCCTCGCGAGGTAGATAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	binding_site	67833	67876	44	+	.	ID=SEQF3610.1|RJNV01000002.1_1_SPACER18;Parent=SEQF3610.1|RJNV01000002.1_1;Note=TATCTATACCGTTTTGGCAAAAATAGAACATTTGGAGGACTTAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	direct_repeat	67877	67904	28	+	.	ID=SEQF3610.1|RJNV01000002.1_1_REPEAT19;Parent=SEQF3610.1|RJNV01000002.1_1;Note=GTTTCCGTCCCCTCGCGAGGTTGATAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	binding_site	67905	67943	39	+	.	ID=SEQF3610.1|RJNV01000002.1_1_SPACER19;Parent=SEQF3610.1|RJNV01000002.1_1;Note=GGGCTATACTCTGTGTTCATTTTATTATTTTGGCCAAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	direct_repeat	67944	67971	28	+	.	ID=SEQF3610.1|RJNV01000002.1_1_REPEAT20;Parent=SEQF3610.1|RJNV01000002.1_1;Note=GTTTCCGGCCCCTCTCGAGGTAGATAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3610.1|RJNV01000002.1	CCTyper	OPERON	57982	72012	14031	-	.	ID=SEQF3610.1|RJNV01000002.1@1;Genome_ID=SEQF3610.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-A;Complete_Interference=100%;Complete_Adaptation=NA;Best_type=III-A;Best_score=17.0;Genes=Csm6_1_CAS-III,Csm6_1_CAS-III,Csm5gr7_0_CAS-III-A-III-D,Csm4gr5_1_CAS-III-A,Csm3gr7_1_CAS-III-A-III-D,Csm2gr11_7_CAS-III-A,Cas10_1_CAS-III,Cas6_0_CAS-I-II-III-IV-V-VI,AbiEii_0_CAS-III;Positions=53,54,55,56,57,58,59,60,64;E-values=5.60e-86,4.70e-76,3.20e-33,2.10e-39,5.40e-73,1.90e-23,2.10e-163,1.00e-27,9.50e-05;CoverageSeq=0.856,0.832,0.869,0.987,0.919,0.921,0.841,0.791,0.316;CoverageHMM=0.981,0.9,0.882,0.984,0.981,0.982,1.0,0.912,0.415;Strand_Interference=-1;Strand_Adaptation=NA
SEQF3610.1|RJNV01000002.1	CCTyper	CDS	70855	72012	386	-	.	ID=SEQF3610.1|RJNV01000002.1_64_cas;Genome_ID=SEQF3610.1;Feature_type=CDS;Product=Cas Prediction : AbiEii_0_CAS-III;coding_strand=-;E-value=9.5e-05;Score=18.9;Coverage_Seq=0.3160621761658031;Coverage_Hmm=0.4154929577464789
SEQF3610.1|RJNV01000002.1	CCTyper	CDS	63471	65774	768	-	.	ID=SEQF3610.1|RJNV01000002.1_59_cas;Genome_ID=SEQF3610.1;Feature_type=CDS;Product=Cas Prediction : Cas10_1_CAS-III;coding_strand=-;E-value=2.1e-163;Score=542.1;Coverage_Seq=0.8411458333333334;Coverage_Hmm=1.0
SEQF3610.1|RJNV01000002.1	CCTyper	CDS	65755	66486	244	-	.	ID=SEQF3610.1|RJNV01000002.1_60_cas;Genome_ID=SEQF3610.1;Feature_type=CDS;Product=Cas Prediction : Cas6_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1e-27;Score=94.6;Coverage_Seq=0.7909836065573771;Coverage_Hmm=0.9123711340206185
SEQF3610.1|RJNV01000002.1	CCTyper	CDS	63090	63470	127	-	.	ID=SEQF3610.1|RJNV01000002.1_58_cas;Genome_ID=SEQF3610.1;Feature_type=CDS;Product=Cas Prediction : Csm2gr11_7_CAS-III-A;coding_strand=-;E-value=1.9e-23;Score=80.4;Coverage_Seq=0.9212598425196851;Coverage_Hmm=0.9818181818181818
SEQF3610.1|RJNV01000002.1	CCTyper	CDS	62428	63090	221	-	.	ID=SEQF3610.1|RJNV01000002.1_57_cas;Genome_ID=SEQF3610.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_1_CAS-III-A-III-D;coding_strand=-;E-value=5.4000000000000005e-73;Score=242.1;Coverage_Seq=0.918552036199095;Coverage_Hmm=0.9813953488372092
SEQF3610.1|RJNV01000002.1	CCTyper	CDS	61521	62426	302	-	.	ID=SEQF3610.1|RJNV01000002.1_56_cas;Genome_ID=SEQF3610.1;Feature_type=CDS;Product=Cas Prediction : Csm4gr5_1_CAS-III-A;coding_strand=-;E-value=2.1e-39;Score=132.4;Coverage_Seq=0.9867549668874173;Coverage_Hmm=0.9841269841269841
SEQF3610.1|RJNV01000002.1	CCTyper	CDS	60448	61524	359	-	.	ID=SEQF3610.1|RJNV01000002.1_55_cas;Genome_ID=SEQF3610.1;Feature_type=CDS;Product=Cas Prediction : Csm5gr7_0_CAS-III-A-III-D;coding_strand=-;E-value=3.2000000000000005e-33;Score=112.2;Coverage_Seq=0.8690807799442897;Coverage_Hmm=0.8821917808219178
SEQF3610.1|RJNV01000002.1	CCTyper	CDS	57982	59271	430	-	.	ID=SEQF3610.1|RJNV01000002.1_53_cas;Genome_ID=SEQF3610.1;Feature_type=CDS;Product=Cas Prediction : Csm6_1_CAS-III;coding_strand=-;E-value=5.6e-86;Score=285.5;Coverage_Seq=0.8558139534883721;Coverage_Hmm=0.9805555555555555
SEQF3610.1|RJNV01000002.1	CCTyper	CDS	59288	60448	387	-	.	ID=SEQF3610.1|RJNV01000002.1_54_cas;Genome_ID=SEQF3610.1;Feature_type=CDS;Product=Cas Prediction : Csm6_1_CAS-III;coding_strand=-;E-value=4.7e-76;Score=252.8;Coverage_Seq=0.8320413436692506;Coverage_Hmm=0.9