SEQF3612.1|RJNX01000003.1	CCTyper	repeat_region	198931	199626	696	+	.	ID=SEQF3612.1|RJNX01000003.1_1;Genome_ID=SEQF3612.1;Note=Predictor:CCtyper;Start:198931;End:199626;Consensus_Repeat:GTTTTTGTACTCTCAAGCTTTAAGTAACTGTACAAC;Number_of_Repeats:11;Repeat_Length:36;Average_Spacer_Length:30;Repeat_Identity:94.0;Spacer_Identity:46.3;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: II-C;Cas_Subtype_Prediction:II-C;Subtype_Probability:0.778;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3612.1|RJNX01000003.1	CCTyper	direct_repeat	198931	198966	36	+	.	ID=SEQF3612.1|RJNX01000003.1_1_REPEAT1;Parent=SEQF3612.1|RJNX01000003.1_1;Note=GTTTTTGTACTCTCAAGCTTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3612.1|RJNX01000003.1	CCTyper	binding_site	198967	198996	30	+	.	ID=SEQF3612.1|RJNX01000003.1_1_SPACER1;Parent=SEQF3612.1|RJNX01000003.1_1;Note=TGTAGAGTTAGGAAAAACTGCTCTAGAACT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3612.1|RJNX01000003.1	CCTyper	direct_repeat	198997	199032	36	+	.	ID=SEQF3612.1|RJNX01000003.1_1_REPEAT2;Parent=SEQF3612.1|RJNX01000003.1_1;Note=GTTTTTGTACTCTCAAGCTTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3612.1|RJNX01000003.1	CCTyper	binding_site	199033	199062	30	+	.	ID=SEQF3612.1|RJNX01000003.1_1_SPACER2;Parent=SEQF3612.1|RJNX01000003.1_1;Note=TCAATGTTAAGTCCAAAGCGTTCTGGATCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3612.1|RJNX01000003.1	CCTyper	direct_repeat	199063	199098	36	+	.	ID=SEQF3612.1|RJNX01000003.1_1_REPEAT3;Parent=SEQF3612.1|RJNX01000003.1_1;Note=GTTTTTGTACTCTCAAGCTTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3612.1|RJNX01000003.1	CCTyper	binding_site	199099	199128	30	+	.	ID=SEQF3612.1|RJNX01000003.1_1_SPACER3;Parent=SEQF3612.1|RJNX01000003.1_1;Note=CAGATGATATCCAAAGACTGCTGCACCAGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3612.1|RJNX01000003.1	CCTyper	direct_repeat	199129	199164	36	+	.	ID=SEQF3612.1|RJNX01000003.1_1_REPEAT4;Parent=SEQF3612.1|RJNX01000003.1_1;Note=GTTTTTGTACTCTCAAGCTTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3612.1|RJNX01000003.1	CCTyper	binding_site	199165	199194	30	+	.	ID=SEQF3612.1|RJNX01000003.1_1_SPACER4;Parent=SEQF3612.1|RJNX01000003.1_1;Note=CAGATGATATCCAAAGACTGCTGCACCAGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3612.1|RJNX01000003.1	CCTyper	direct_repeat	199195	199230	36	+	.	ID=SEQF3612.1|RJNX01000003.1_1_REPEAT5;Parent=SEQF3612.1|RJNX01000003.1_1;Note=GTTTTTGTACTCTCAAGCTTTAAGTAACTGTAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3612.1|RJNX01000003.1	CCTyper	binding_site	199231	199260	30	+	.	ID=SEQF3612.1|RJNX01000003.1_1_SPACER5;Parent=SEQF3612.1|RJNX01000003.1_1;Note=TCAGCACCTTCACATCACGGCCAACCGCTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3612.1|RJNX01000003.1	CCTyper	direct_repeat	199261	199296	36	+	.	ID=SEQF3612.1|RJNX01000003.1_1_REPEAT6;Parent=SEQF3612.1|RJNX01000003.1_1;Note=GTTTTTGTACTCTCAAGCTTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3612.1|RJNX01000003.1	CCTyper	binding_site	199297	199326	30	+	.	ID=SEQF3612.1|RJNX01000003.1_1_SPACER6;Parent=SEQF3612.1|RJNX01000003.1_1;Note=ATGGTAACTGGTATTGGTTCGACAACTCAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3612.1|RJNX01000003.1	CCTyper	direct_repeat	199327	199362	36	+	.	ID=SEQF3612.1|RJNX01000003.1_1_REPEAT7;Parent=SEQF3612.1|RJNX01000003.1_1;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3612.1|RJNX01000003.1	CCTyper	binding_site	199363	199392	30	+	.	ID=SEQF3612.1|RJNX01000003.1_1_SPACER7;Parent=SEQF3612.1|RJNX01000003.1_1;Note=TGCAGTCAAGAACACGAATACCGCATTGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3612.1|RJNX01000003.1	CCTyper	direct_repeat	199393	199428	36	+	.	ID=SEQF3612.1|RJNX01000003.1_1_REPEAT8;Parent=SEQF3612.1|RJNX01000003.1_1;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3612.1|RJNX01000003.1	CCTyper	binding_site	199429	199458	30	+	.	ID=SEQF3612.1|RJNX01000003.1_1_SPACER8;Parent=SEQF3612.1|RJNX01000003.1_1;Note=CCAATTTAGGTATTGCGTATATTGCAGCCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3612.1|RJNX01000003.1	CCTyper	direct_repeat	199459	199494	36	+	.	ID=SEQF3612.1|RJNX01000003.1_1_REPEAT9;Parent=SEQF3612.1|RJNX01000003.1_1;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3612.1|RJNX01000003.1	CCTyper	binding_site	199495	199524	30	+	.	ID=SEQF3612.1|RJNX01000003.1_1_SPACER9;Parent=SEQF3612.1|RJNX01000003.1_1;Note=TGGTAGACCTTATGGAATATGGTATTTAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3612.1|RJNX01000003.1	CCTyper	direct_repeat	199525	199560	36	+	.	ID=SEQF3612.1|RJNX01000003.1_1_REPEAT10;Parent=SEQF3612.1|RJNX01000003.1_1;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3612.1|RJNX01000003.1	CCTyper	binding_site	199561	199590	30	+	.	ID=SEQF3612.1|RJNX01000003.1_1_SPACER10;Parent=SEQF3612.1|RJNX01000003.1_1;Note=ATAAGGATAAGACTCTGGATTCTGTTATAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3612.1|RJNX01000003.1	CCTyper	direct_repeat	199591	199626	36	+	.	ID=SEQF3612.1|RJNX01000003.1_1_REPEAT11;Parent=SEQF3612.1|RJNX01000003.1_1;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3612.1|RJNX01000003.1	CCTyper	OPERON	190496	201822	11327	+	.	ID=SEQF3612.1|RJNX01000003.1@7;Genome_ID=SEQF3612.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Csm2_0_IIIA,Cas9_0_II,Cas1_4_CAS-I-II-III-IV-V-VI,Cas2_5_CAS-I-II-III-IV-V-VI,Csn2_2_CAS-II-A,Cas3HD_0_CAS-I;Positions=219,223,224,225,226,228;E-values=6.40e-05,2.30e-220,4.70e-97,1.20e-31,5.40e-141,3.10e-03;CoverageSeq=0.708,0.759,0.911,0.954,0.994,0.313;CoverageHMM=0.542,0.984,0.996,0.888,1.0,0.433;Strand_Interference=1;Strand_Adaptation=1
SEQF3612.1|RJNX01000003.1	CCTyper	CDS	196584	197492	303	+	.	ID=SEQF3612.1|RJNX01000003.1_224_cas;Genome_ID=SEQF3612.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=4.7e-97;Score=321.3;Coverage_Seq=0.9108910891089109;Coverage_Hmm=0.9963636363636363
SEQF3612.1|RJNX01000003.1	CCTyper	CDS	197497	197820	108	+	.	ID=SEQF3612.1|RJNX01000003.1_225_cas;Genome_ID=SEQF3612.1;Feature_type=CDS;Product=Cas Prediction : Cas2_5_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.2e-31;Score=106.2;Coverage_Seq=0.9537037037037037;Coverage_Hmm=0.8879310344827587
SEQF3612.1|RJNX01000003.1	CCTyper	CDS	200518	201822	435	-	.	ID=SEQF3612.1|RJNX01000003.1_228_cas;Genome_ID=SEQF3612.1;Feature_type=CDS;Product=Cas Prediction : Cas3HD_0_CAS-I;coding_strand=-;E-value=0.0031;Score=14.2;Coverage_Seq=0.31264367816091954;Coverage_Hmm=0.43349753694581283
SEQF3612.1|RJNX01000003.1	CCTyper	CDS	193041	196406	1122	+	.	ID=SEQF3612.1|RJNX01000003.1_223_cas;Genome_ID=SEQF3612.1;Feature_type=CDS;Product=Cas Prediction : Cas9_0_II;coding_strand=+;E-value=2.3e-220;Score=731.0;Coverage_Seq=0.7593582887700535;Coverage_Hmm=0.9843373493975903
SEQF3612.1|RJNX01000003.1	CCTyper	CDS	190496	190762	89	+	.	ID=SEQF3612.1|RJNX01000003.1_219_cas;Genome_ID=SEQF3612.1;Feature_type=CDS;Product=Cas Prediction : Csm2_0_IIIA;coding_strand=+;E-value=6.4e-05;Score=20.7;Coverage_Seq=0.7078651685393258;Coverage_Hmm=0.5416666666666666
SEQF3612.1|RJNX01000003.1	CCTyper	CDS	197817	198860	348	+	.	ID=SEQF3612.1|RJNX01000003.1_226_cas;Genome_ID=SEQF3612.1;Feature_type=CDS;Product=Cas Prediction : Csn2_2_CAS-II-A;coding_strand=+;E-value=5.399999999999999e-141;Score=466.3;Coverage_Seq=0.9942528735632183;Coverage_Hmm=1.0