SEQF3627.1|RJOA01000013.1	CCTyper	repeat_region	65616	66572	957	+	.	ID=SEQF3627.1|RJOA01000013.1_1;Genome_ID=SEQF3627.1;Note=Predictor:CCtyper;Start:65616;End:66572;Consensus_Repeat:GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Number_of_Repeats:15;Repeat_Length:36;Average_Spacer_Length:29.8;Repeat_Identity:95.9;Spacer_Identity:42.6;Spacer_Length_Sem:0.1;Trusted:True;Cas_Type_Prediction: II-C;Cas_Subtype_Prediction:II-C;Subtype_Probability:0.946;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000013.1	CCTyper	direct_repeat	65616	65651	36	+	.	ID=SEQF3627.1|RJOA01000013.1_1_REPEAT1;Parent=SEQF3627.1|RJOA01000013.1_1;Note=AATATACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000013.1	CCTyper	binding_site	65652	65681	30	+	.	ID=SEQF3627.1|RJOA01000013.1_1_SPACER1;Parent=SEQF3627.1|RJOA01000013.1_1;Note=GAATCAGTAGTTTTCAAACCTACGATGTCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000013.1	CCTyper	direct_repeat	65682	65717	36	+	.	ID=SEQF3627.1|RJOA01000013.1_1_REPEAT2;Parent=SEQF3627.1|RJOA01000013.1_1;Note=GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000013.1	CCTyper	binding_site	65718	65747	30	+	.	ID=SEQF3627.1|RJOA01000013.1_1_SPACER2;Parent=SEQF3627.1|RJOA01000013.1_1;Note=AATTCCTTATCTTTATTTCTATAACCATTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000013.1	CCTyper	direct_repeat	65748	65783	36	+	.	ID=SEQF3627.1|RJOA01000013.1_1_REPEAT3;Parent=SEQF3627.1|RJOA01000013.1_1;Note=GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000013.1	CCTyper	binding_site	65784	65813	30	+	.	ID=SEQF3627.1|RJOA01000013.1_1_SPACER3;Parent=SEQF3627.1|RJOA01000013.1_1;Note=GCAACCTTGCTATACTGGTCTTTCTAGTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000013.1	CCTyper	direct_repeat	65814	65849	36	+	.	ID=SEQF3627.1|RJOA01000013.1_1_REPEAT4;Parent=SEQF3627.1|RJOA01000013.1_1;Note=GTTGTACATTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000013.1	CCTyper	binding_site	65850	65879	30	+	.	ID=SEQF3627.1|RJOA01000013.1_1_SPACER4;Parent=SEQF3627.1|RJOA01000013.1_1;Note=ATCCGTCGCTATATGGAAAGCCAAGAGGCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000013.1	CCTyper	direct_repeat	65880	65915	36	+	.	ID=SEQF3627.1|RJOA01000013.1_1_REPEAT5;Parent=SEQF3627.1|RJOA01000013.1_1;Note=GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000013.1	CCTyper	binding_site	65916	65945	30	+	.	ID=SEQF3627.1|RJOA01000013.1_1_SPACER5;Parent=SEQF3627.1|RJOA01000013.1_1;Note=CTAAGATAATTCTAAATGGAAAAATCGTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000013.1	CCTyper	direct_repeat	65946	65981	36	+	.	ID=SEQF3627.1|RJOA01000013.1_1_REPEAT6;Parent=SEQF3627.1|RJOA01000013.1_1;Note=GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000013.1	CCTyper	binding_site	65982	66010	29	+	.	ID=SEQF3627.1|RJOA01000013.1_1_SPACER6;Parent=SEQF3627.1|RJOA01000013.1_1;Note=AGTTATTCATGAAATCGCTAGCGTTATCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000013.1	CCTyper	direct_repeat	66011	66046	36	+	.	ID=SEQF3627.1|RJOA01000013.1_1_REPEAT7;Parent=SEQF3627.1|RJOA01000013.1_1;Note=GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000013.1	CCTyper	binding_site	66047	66076	30	+	.	ID=SEQF3627.1|RJOA01000013.1_1_SPACER7;Parent=SEQF3627.1|RJOA01000013.1_1;Note=CCGAGTCAGGTTTTCCTAGAGGAGCGTTTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000013.1	CCTyper	direct_repeat	66077	66112	36	+	.	ID=SEQF3627.1|RJOA01000013.1_1_REPEAT8;Parent=SEQF3627.1|RJOA01000013.1_1;Note=GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000013.1	CCTyper	binding_site	66113	66142	30	+	.	ID=SEQF3627.1|RJOA01000013.1_1_SPACER8;Parent=SEQF3627.1|RJOA01000013.1_1;Note=AAGCATGGACGGTATACGCTGGTGGCAATA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000013.1	CCTyper	direct_repeat	66143	66178	36	+	.	ID=SEQF3627.1|RJOA01000013.1_1_REPEAT9;Parent=SEQF3627.1|RJOA01000013.1_1;Note=GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000013.1	CCTyper	binding_site	66179	66208	30	+	.	ID=SEQF3627.1|RJOA01000013.1_1_SPACER9;Parent=SEQF3627.1|RJOA01000013.1_1;Note=ATATCTGAGACAAACTGTTTAGAAAACTTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000013.1	CCTyper	direct_repeat	66209	66244	36	+	.	ID=SEQF3627.1|RJOA01000013.1_1_REPEAT10;Parent=SEQF3627.1|RJOA01000013.1_1;Note=GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000013.1	CCTyper	binding_site	66245	66274	30	+	.	ID=SEQF3627.1|RJOA01000013.1_1_SPACER10;Parent=SEQF3627.1|RJOA01000013.1_1;Note=TGCTCTCCATGTAACGGCGGATAAGCAAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000013.1	CCTyper	direct_repeat	66275	66310	36	+	.	ID=SEQF3627.1|RJOA01000013.1_1_REPEAT11;Parent=SEQF3627.1|RJOA01000013.1_1;Note=GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000013.1	CCTyper	binding_site	66311	66340	30	+	.	ID=SEQF3627.1|RJOA01000013.1_1_SPACER11;Parent=SEQF3627.1|RJOA01000013.1_1;Note=AGTCATAATCGCCCCCAATGTTGCTGGCAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000013.1	CCTyper	direct_repeat	66341	66376	36	+	.	ID=SEQF3627.1|RJOA01000013.1_1_REPEAT12;Parent=SEQF3627.1|RJOA01000013.1_1;Note=GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000013.1	CCTyper	binding_site	66377	66405	29	+	.	ID=SEQF3627.1|RJOA01000013.1_1_SPACER12;Parent=SEQF3627.1|RJOA01000013.1_1;Note=TAACTTTGATATTATTGTTCCTAAGATGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000013.1	CCTyper	direct_repeat	66406	66441	36	+	.	ID=SEQF3627.1|RJOA01000013.1_1_REPEAT13;Parent=SEQF3627.1|RJOA01000013.1_1;Note=GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000013.1	CCTyper	binding_site	66442	66471	30	+	.	ID=SEQF3627.1|RJOA01000013.1_1_SPACER13;Parent=SEQF3627.1|RJOA01000013.1_1;Note=AATCTCCTTGAATGGTTGTGACACGTTGGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000013.1	CCTyper	direct_repeat	66472	66507	36	+	.	ID=SEQF3627.1|RJOA01000013.1_1_REPEAT14;Parent=SEQF3627.1|RJOA01000013.1_1;Note=GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000013.1	CCTyper	binding_site	66508	66536	29	+	.	ID=SEQF3627.1|RJOA01000013.1_1_SPACER14;Parent=SEQF3627.1|RJOA01000013.1_1;Note=ACGCTCTTTACGATTGTTACGAGAAATCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000013.1	CCTyper	direct_repeat	66537	66572	36	+	.	ID=SEQF3627.1|RJOA01000013.1_1_REPEAT15;Parent=SEQF3627.1|RJOA01000013.1_1;Note=GTTGTACAGTTACTTAAATCTTGAGAGTACAAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000020.1	CCTyper	repeat_region	11075	11528	454	+	.	ID=SEQF3627.1|RJOA01000020.1_2;Genome_ID=SEQF3627.1;Note=Predictor:CCtyper;Start:11075;End:11528;Consensus_Repeat:CTATCGGCACAGCAGGAATAGAACAACCGCCTAC;Number_of_Repeats:8;Repeat_Length:34;Average_Spacer_Length:26.0;Repeat_Identity:76.8;Spacer_Identity:69.8;Spacer_Length_Sem:0.0;Trusted:False;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:III-D;Subtype_Probability:0.107;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000020.1	CCTyper	direct_repeat	11075	11108	34	+	.	ID=SEQF3627.1|RJOA01000020.1_2_REPEAT1;Parent=SEQF3627.1|RJOA01000020.1_2;Note=CTATCAGCACAGCAGGACTAGAACAAGCTCCTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000020.1	CCTyper	binding_site	11109	11134	26	+	.	ID=SEQF3627.1|RJOA01000020.1_2_SPACER1;Parent=SEQF3627.1|RJOA01000020.1_2;Note=TGTTTCTATTCCTGAGTACACTAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000020.1	CCTyper	direct_repeat	11135	11168	34	+	.	ID=SEQF3627.1|RJOA01000020.1_2_REPEAT2;Parent=SEQF3627.1|RJOA01000020.1_2;Note=CTGTCGGCACAGCAGGAATAGAACAAGCTCCTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000020.1	CCTyper	binding_site	11169	11194	26	+	.	ID=SEQF3627.1|RJOA01000020.1_2_SPACER2;Parent=SEQF3627.1|RJOA01000020.1_2;Note=CGTTTCTATTCCTGAGTACACTAAGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000020.1	CCTyper	direct_repeat	11195	11228	34	+	.	ID=SEQF3627.1|RJOA01000020.1_2_REPEAT3;Parent=SEQF3627.1|RJOA01000020.1_2;Note=CTATTGGCACAGCAGGGCTAGAGCAAGCGCCTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000020.1	CCTyper	binding_site	11229	11254	26	+	.	ID=SEQF3627.1|RJOA01000020.1_2_SPACER3;Parent=SEQF3627.1|RJOA01000020.1_2;Note=GGTTTCTATCCCTGAATACACTCAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000020.1	CCTyper	direct_repeat	11255	11288	34	+	.	ID=SEQF3627.1|RJOA01000020.1_2_REPEAT4;Parent=SEQF3627.1|RJOA01000020.1_2;Note=CTATCGGCACAGCAGGACTAGAACAACCACCTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000020.1	CCTyper	binding_site	11289	11314	26	+	.	ID=SEQF3627.1|RJOA01000020.1_2_SPACER4;Parent=SEQF3627.1|RJOA01000020.1_2;Note=GGTTTCTATTCCTGAATACACTAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000020.1	CCTyper	direct_repeat	11315	11348	34	+	.	ID=SEQF3627.1|RJOA01000020.1_2_REPEAT5;Parent=SEQF3627.1|RJOA01000020.1_2;Note=CTATCGGCACAGCAGGACTAGAACAGCCACCTGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000020.1	CCTyper	binding_site	11349	11374	26	+	.	ID=SEQF3627.1|RJOA01000020.1_2_SPACER5;Parent=SEQF3627.1|RJOA01000020.1_2;Note=AGTAAACGTCCCTGAATACATTCAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000020.1	CCTyper	direct_repeat	11375	11408	34	+	.	ID=SEQF3627.1|RJOA01000020.1_2_REPEAT6;Parent=SEQF3627.1|RJOA01000020.1_2;Note=CTATCGGCACAGCAGGAATAGAACAACCGCCTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000020.1	CCTyper	binding_site	11409	11434	26	+	.	ID=SEQF3627.1|RJOA01000020.1_2_SPACER6;Parent=SEQF3627.1|RJOA01000020.1_2;Note=GGTTTCTATCCCTGAGTACACGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000020.1	CCTyper	direct_repeat	11435	11468	34	+	.	ID=SEQF3627.1|RJOA01000020.1_2_REPEAT7;Parent=SEQF3627.1|RJOA01000020.1_2;Note=CTATCGGCACAGCAGGACAAGAGCAAGCACTTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000020.1	CCTyper	binding_site	11469	11494	26	+	.	ID=SEQF3627.1|RJOA01000020.1_2_SPACER7;Parent=SEQF3627.1|RJOA01000020.1_2;Note=TGTTTCTATTCCTGAGTACACGAAGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000020.1	CCTyper	direct_repeat	11495	11528	34	+	.	ID=SEQF3627.1|RJOA01000020.1_2_REPEAT8;Parent=SEQF3627.1|RJOA01000020.1_2;Note=CTATCGACACAGCAGGACAAGAGCAAGCGCCTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF3627.1|RJOA01000031.1	CCTyper	OPERON	2	5161	5160	-	.	ID=SEQF3627.1|RJOA01000031.1@1;Genome_ID=SEQF3627.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Csn2_2_CAS-II-A,Cas2_5_CAS-I-II-III-IV-V-VI,Cas1_4_CAS-I-II-III-IV-V-VI,Cas9_0_II;Positions=1,2,3,4;E-values=1.10e-50,1.20e-31,1.00e-98,1.90e-215;CoverageSeq=1.0,0.954,0.911,0.732;CoverageHMM=0.315,0.888,0.996,0.976;Strand_Interference=-1;Strand_Adaptation=-1
SEQF3627.1|RJOA01000031.1	CCTyper	CDS	650	1558	303	-	.	ID=SEQF3627.1|RJOA01000031.1_3_cas;Genome_ID=SEQF3627.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1e-98;Score=326.8;Coverage_Seq=0.9108910891089109;Coverage_Hmm=0.9963636363636363
SEQF3627.1|RJOA01000031.1	CCTyper	CDS	322	645	108	-	.	ID=SEQF3627.1|RJOA01000031.1_2_cas;Genome_ID=SEQF3627.1;Feature_type=CDS;Product=Cas Prediction : Cas2_5_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.2e-31;Score=106.2;Coverage_Seq=0.9537037037037037;Coverage_Hmm=0.8879310344827587
SEQF3627.1|RJOA01000031.1	CCTyper	CDS	1736	5161	1142	-	.	ID=SEQF3627.1|RJOA01000031.1_4_cas;Genome_ID=SEQF3627.1;Feature_type=CDS;Product=Cas Prediction : Cas9_0_II;coding_strand=-;E-value=1.9e-215;Score=714.7;Coverage_Seq=0.7320490367775832;Coverage_Hmm=0.9759036144578314
SEQF3627.1|RJOA01000031.1	CCTyper	CDS	2	325	108	-	.	ID=SEQF3627.1|RJOA01000031.1_1_cas;Genome_ID=SEQF3627.1;Feature_type=CDS;Product=Cas Prediction : Csn2_2_CAS-II-A;coding_strand=-;E-value=1.1e-50;Score=169.3;Coverage_Seq=1.0;Coverage_Hmm=0.31486880466472306