SEQF4147.1|CP012343.1	CCTyper	repeat_region	2563734	2564693	960	+	.	ID=SEQF4147.1|CP012343.1_1;Genome_ID=SEQF4147.1;Note=Predictor:CCtyper;Start:2563734;End:2564693;Consensus_Repeat:GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC;Number_of_Repeats:15;Repeat_Length:36;Average_Spacer_Length:30;Repeat_Identity:92.7;Spacer_Identity:42.5;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: II-A;Cas_Subtype_Prediction:II-A;Subtype_Probability:0.996;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4147.1|CP012343.1	CCTyper	direct_repeat	2563734	2563769	36	+	.	ID=SEQF4147.1|CP012343.1_1_REPEAT1;Parent=SEQF4147.1|CP012343.1_1;Note=GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4147.1|CP012343.1	CCTyper	binding_site	2563770	2563799	30	+	.	ID=SEQF4147.1|CP012343.1_1_SPACER1;Parent=SEQF4147.1|CP012343.1_1;Note=GACGAAATTACAAAAGACCGTCATAAGCGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4147.1|CP012343.1	CCTyper	direct_repeat	2563800	2563835	36	+	.	ID=SEQF4147.1|CP012343.1_1_REPEAT2;Parent=SEQF4147.1|CP012343.1_1;Note=GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4147.1|CP012343.1	CCTyper	binding_site	2563836	2563865	30	+	.	ID=SEQF4147.1|CP012343.1_1_SPACER2;Parent=SEQF4147.1|CP012343.1_1;Note=CGGCAAGTAATCAGCTAGGAGGTTCGCGCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4147.1|CP012343.1	CCTyper	direct_repeat	2563866	2563901	36	+	.	ID=SEQF4147.1|CP012343.1_1_REPEAT3;Parent=SEQF4147.1|CP012343.1_1;Note=GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4147.1|CP012343.1	CCTyper	binding_site	2563902	2563931	30	+	.	ID=SEQF4147.1|CP012343.1_1_SPACER3;Parent=SEQF4147.1|CP012343.1_1;Note=TATGGAATGGGTCAAGTTTTTCACTCAATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4147.1|CP012343.1	CCTyper	direct_repeat	2563932	2563967	36	+	.	ID=SEQF4147.1|CP012343.1_1_REPEAT4;Parent=SEQF4147.1|CP012343.1_1;Note=GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4147.1|CP012343.1	CCTyper	binding_site	2563968	2563997	30	+	.	ID=SEQF4147.1|CP012343.1_1_SPACER4;Parent=SEQF4147.1|CP012343.1_1;Note=AATGATTATGTGGACGAACATAATCAGATG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4147.1|CP012343.1	CCTyper	direct_repeat	2563998	2564033	36	+	.	ID=SEQF4147.1|CP012343.1_1_REPEAT5;Parent=SEQF4147.1|CP012343.1_1;Note=GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4147.1|CP012343.1	CCTyper	binding_site	2564034	2564063	30	+	.	ID=SEQF4147.1|CP012343.1_1_SPACER5;Parent=SEQF4147.1|CP012343.1_1;Note=ACGCTATGCGTTCGTATGTAGCAACTCATA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4147.1|CP012343.1	CCTyper	direct_repeat	2564064	2564099	36	+	.	ID=SEQF4147.1|CP012343.1_1_REPEAT6;Parent=SEQF4147.1|CP012343.1_1;Note=GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4147.1|CP012343.1	CCTyper	binding_site	2564100	2564129	30	+	.	ID=SEQF4147.1|CP012343.1_1_SPACER6;Parent=SEQF4147.1|CP012343.1_1;Note=TGTCGCGCTGCGCATTAGCCGTAATCAACT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4147.1|CP012343.1	CCTyper	direct_repeat	2564130	2564165	36	+	.	ID=SEQF4147.1|CP012343.1_1_REPEAT7;Parent=SEQF4147.1|CP012343.1_1;Note=GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4147.1|CP012343.1	CCTyper	binding_site	2564166	2564195	30	+	.	ID=SEQF4147.1|CP012343.1_1_SPACER7;Parent=SEQF4147.1|CP012343.1_1;Note=CCACCAGTTATCGCGATTACTTAACTTATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4147.1|CP012343.1	CCTyper	direct_repeat	2564196	2564231	36	+	.	ID=SEQF4147.1|CP012343.1_1_REPEAT8;Parent=SEQF4147.1|CP012343.1_1;Note=GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4147.1|CP012343.1	CCTyper	binding_site	2564232	2564261	30	+	.	ID=SEQF4147.1|CP012343.1_1_SPACER8;Parent=SEQF4147.1|CP012343.1_1;Note=GCCTAGGTCAAGAACTAACTAAAGAGTTAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4147.1|CP012343.1	CCTyper	direct_repeat	2564262	2564297	36	+	.	ID=SEQF4147.1|CP012343.1_1_REPEAT9;Parent=SEQF4147.1|CP012343.1_1;Note=GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4147.1|CP012343.1	CCTyper	binding_site	2564298	2564327	30	+	.	ID=SEQF4147.1|CP012343.1_1_SPACER9;Parent=SEQF4147.1|CP012343.1_1;Note=TGTCACTTTCTAATGAACTTGCAACCATCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4147.1|CP012343.1	CCTyper	direct_repeat	2564328	2564363	36	+	.	ID=SEQF4147.1|CP012343.1_1_REPEAT10;Parent=SEQF4147.1|CP012343.1_1;Note=GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4147.1|CP012343.1	CCTyper	binding_site	2564364	2564393	30	+	.	ID=SEQF4147.1|CP012343.1_1_SPACER10;Parent=SEQF4147.1|CP012343.1_1;Note=CCGGTCGCCACCGGGACAAGCCCACAAAGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4147.1|CP012343.1	CCTyper	direct_repeat	2564394	2564429	36	+	.	ID=SEQF4147.1|CP012343.1_1_REPEAT11;Parent=SEQF4147.1|CP012343.1_1;Note=GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4147.1|CP012343.1	CCTyper	binding_site	2564430	2564459	30	+	.	ID=SEQF4147.1|CP012343.1_1_SPACER11;Parent=SEQF4147.1|CP012343.1_1;Note=ACATTGATGACTATTTCGGCAAAGAATATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4147.1|CP012343.1	CCTyper	direct_repeat	2564460	2564495	36	+	.	ID=SEQF4147.1|CP012343.1_1_REPEAT12;Parent=SEQF4147.1|CP012343.1_1;Note=GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4147.1|CP012343.1	CCTyper	binding_site	2564496	2564525	30	+	.	ID=SEQF4147.1|CP012343.1_1_SPACER12;Parent=SEQF4147.1|CP012343.1_1;Note=AACACTAGTAAATTGCCACATGGCAATGTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4147.1|CP012343.1	CCTyper	direct_repeat	2564526	2564561	36	+	.	ID=SEQF4147.1|CP012343.1_1_REPEAT13;Parent=SEQF4147.1|CP012343.1_1;Note=GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4147.1|CP012343.1	CCTyper	binding_site	2564562	2564591	30	+	.	ID=SEQF4147.1|CP012343.1_1_SPACER13;Parent=SEQF4147.1|CP012343.1_1;Note=AATGCCAGTCCTTTGTATTCACTTTTGTTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4147.1|CP012343.1	CCTyper	direct_repeat	2564592	2564627	36	+	.	ID=SEQF4147.1|CP012343.1_1_REPEAT14;Parent=SEQF4147.1|CP012343.1_1;Note=GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4147.1|CP012343.1	CCTyper	binding_site	2564628	2564657	30	+	.	ID=SEQF4147.1|CP012343.1_1_SPACER14;Parent=SEQF4147.1|CP012343.1_1;Note=GATGCTGAGGAAACGAAGCATAGAACGTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4147.1|CP012343.1	CCTyper	direct_repeat	2564658	2564693	36	+	.	ID=SEQF4147.1|CP012343.1_1_REPEAT15;Parent=SEQF4147.1|CP012343.1_1;Note=GTCTTGAATAGCGGCCACATCAAAAACAGTTTCACG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4147.1|CP012343.1	CCTyper	OPERON	2557576	2563709	6134	+	.	ID=SEQF4147.1|CP012343.1@46;Genome_ID=SEQF4147.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Cas9_0_II,Cas1_4_CAS-I-II-III-IV-V-VI,Cas2_9_CAS-I-II-III-IV-V-VI,Csn2_3_CAS-II-A;Positions=2378,2379,2380,2381;E-values=4.90e-169,4.40e-81,1.20e-49,4.10e-72;CoverageSeq=0.752,0.884,0.99,0.973;CoverageHMM=0.972,0.993,1.0,1.0;Strand_Interference=1;Strand_Adaptation=1
SEQF4147.1|CP012343.1	CCTyper	CDS	2561847	2562752	302	+	.	ID=SEQF4147.1|CP012343.1_2379_cas;Genome_ID=SEQF4147.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=4.4e-81;Score=269.5;Coverage_Seq=0.8841059602649006;Coverage_Hmm=0.9927272727272727
SEQF4147.1|CP012343.1	CCTyper	CDS	2562730	2563035	102	+	.	ID=SEQF4147.1|CP012343.1_2380_cas;Genome_ID=SEQF4147.1;Feature_type=CDS;Product=Cas Prediction : Cas2_9_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.2e-49;Score=164.1;Coverage_Seq=0.9901960784313726;Coverage_Hmm=1.0
SEQF4147.1|CP012343.1	CCTyper	CDS	2557576	2561652	1359	+	.	ID=SEQF4147.1|CP012343.1_2378_cas;Genome_ID=SEQF4147.1;Feature_type=CDS;Product=Cas Prediction : Cas9_0_II;coding_strand=+;E-value=4.9e-169;Score=561.8;Coverage_Seq=0.7520235467255335;Coverage_Hmm=0.9722891566265061
SEQF4147.1|CP012343.1	CCTyper	CDS	2563032	2563709	226	+	.	ID=SEQF4147.1|CP012343.1_2381_cas;Genome_ID=SEQF4147.1;Feature_type=CDS;Product=Cas Prediction : Csn2_3_CAS-II-A;coding_strand=+;E-value=4.1e-72;Score=239.8;Coverage_Seq=0.9734513274336283;Coverage_Hmm=1.0