SEQF4403.1|KQ969062.1	CCTyper	repeat_region	1579955	1580572	618	+	.	ID=SEQF4403.1|KQ969062.1_1;Genome_ID=SEQF4403.1;Note=Predictor:CCtyper;Start:1579955;End:1580572;Consensus_Repeat:CTTTCCGTCCCCTCTCGAGGATTAGGGAGGTTCTATC;Number_of_Repeats:9;Repeat_Length:37;Average_Spacer_Length:35.6;Repeat_Identity:96.7;Spacer_Identity:44.2;Spacer_Length_Sem:0.6;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.972;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4403.1|KQ969062.1	CCTyper	direct_repeat	1579955	1579991	37	+	.	ID=SEQF4403.1|KQ969062.1_1_REPEAT1;Parent=SEQF4403.1|KQ969062.1_1;Note=CACCCTGTCCCCTCTCGAGGATTAGGGAGGTTCTATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4403.1|KQ969062.1	CCTyper	binding_site	1579992	1580025	34	+	.	ID=SEQF4403.1|KQ969062.1_1_SPACER1;Parent=SEQF4403.1|KQ969062.1_1;Note=TGAATGGCATAATCCGTATTATAAAAATGAAACT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4403.1|KQ969062.1	CCTyper	direct_repeat	1580026	1580062	37	+	.	ID=SEQF4403.1|KQ969062.1_1_REPEAT2;Parent=SEQF4403.1|KQ969062.1_1;Note=CTTTCCGTCCCCTCTCGAGGATTAGGGAGGTTCTATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4403.1|KQ969062.1	CCTyper	binding_site	1580063	1580099	37	+	.	ID=SEQF4403.1|KQ969062.1_1_SPACER2;Parent=SEQF4403.1|KQ969062.1_1;Note=CGATGCGAAATTTATCCGAGAAATGGAGCAGGCGAGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4403.1|KQ969062.1	CCTyper	direct_repeat	1580100	1580136	37	+	.	ID=SEQF4403.1|KQ969062.1_1_REPEAT3;Parent=SEQF4403.1|KQ969062.1_1;Note=CTTTCCGTCCCCTCTCGAGGATTAGGGAGGTTCTATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4403.1|KQ969062.1	CCTyper	binding_site	1580137	1580169	33	+	.	ID=SEQF4403.1|KQ969062.1_1_SPACER3;Parent=SEQF4403.1|KQ969062.1_1;Note=AGAATACATCCAACTCAAAAACCGGTGAATTTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4403.1|KQ969062.1	CCTyper	direct_repeat	1580170	1580206	37	+	.	ID=SEQF4403.1|KQ969062.1_1_REPEAT4;Parent=SEQF4403.1|KQ969062.1_1;Note=CTTTCCGTCCCCTCTCGAGGATTAGGGAGGTTCTATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4403.1|KQ969062.1	CCTyper	binding_site	1580207	1580240	34	+	.	ID=SEQF4403.1|KQ969062.1_1_SPACER4;Parent=SEQF4403.1|KQ969062.1_1;Note=GTAAGAAACAGTTCCTGATAGATACCAACATTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4403.1|KQ969062.1	CCTyper	direct_repeat	1580241	1580277	37	+	.	ID=SEQF4403.1|KQ969062.1_1_REPEAT5;Parent=SEQF4403.1|KQ969062.1_1;Note=CTTTCCGTCCCCTCTCGAGGATTAGGGAGGTTCTATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4403.1|KQ969062.1	CCTyper	binding_site	1580278	1580313	36	+	.	ID=SEQF4403.1|KQ969062.1_1_SPACER5;Parent=SEQF4403.1|KQ969062.1_1;Note=AAAAACTATGTTAGACTTGTGAACAAGAAACGGCAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4403.1|KQ969062.1	CCTyper	direct_repeat	1580314	1580350	37	+	.	ID=SEQF4403.1|KQ969062.1_1_REPEAT6;Parent=SEQF4403.1|KQ969062.1_1;Note=CTTTCCGTCCCCTCTCGAGGATTAGGGAGGTTCTATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4403.1|KQ969062.1	CCTyper	binding_site	1580351	1580387	37	+	.	ID=SEQF4403.1|KQ969062.1_1_SPACER6;Parent=SEQF4403.1|KQ969062.1_1;Note=GAACGGCATCCATGACCGTTCCTCGAAAAGCATTTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4403.1|KQ969062.1	CCTyper	direct_repeat	1580388	1580424	37	+	.	ID=SEQF4403.1|KQ969062.1_1_REPEAT7;Parent=SEQF4403.1|KQ969062.1_1;Note=CTTTCCGTCCCCTCTCGAGGATTAGGGAGGTTCTATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4403.1|KQ969062.1	CCTyper	binding_site	1580425	1580460	36	+	.	ID=SEQF4403.1|KQ969062.1_1_SPACER7;Parent=SEQF4403.1|KQ969062.1_1;Note=AAACTACGTAAACCAGCATATAAAGGTGATATTGGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4403.1|KQ969062.1	CCTyper	direct_repeat	1580461	1580497	37	+	.	ID=SEQF4403.1|KQ969062.1_1_REPEAT8;Parent=SEQF4403.1|KQ969062.1_1;Note=CTTTCCGTCCCCTCTCGAGGATTAGGGAGGTTCTATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4403.1|KQ969062.1	CCTyper	binding_site	1580498	1580535	38	+	.	ID=SEQF4403.1|KQ969062.1_1_SPACER8;Parent=SEQF4403.1|KQ969062.1_1;Note=ACAATTTACAAATTATCGCAGTAGGCACACTTTTTTCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4403.1|KQ969062.1	CCTyper	direct_repeat	1580536	1580572	37	+	.	ID=SEQF4403.1|KQ969062.1_1_REPEAT9;Parent=SEQF4403.1|KQ969062.1_1;Note=CTTTCCGTCCCCTCTCGAGGATTAGGGAGGTTCTATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4403.1|KQ969062.1	CCTyper	OPERON	1572027	1583572	11546	-	.	ID=SEQF4403.1|KQ969062.1@33;Genome_ID=SEQF4403.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-A;Complete_Interference=100%;Complete_Adaptation=NA;Best_type=III-A;Best_score=18.0;Genes=Csm6_3_CAS-III,Csm5gr7_1_CAS-III-A-III-D,Csm4gr5_1_CAS-III-A,Csm3gr7_1_CAS-III-A-III-D,Csm2gr11_7_CAS-III-A,Cas10_1_CAS-III,Cas6_8_CAS-I-II-III-IV-V-VI,Cas2_2_CAS-I-II-III-IV-V-VI,Cas1_0_CAS-I-II-III-IV-V-VI,Csm6_7_CAS-III;Positions=1567,1569,1570,1571,1572,1573,1574,1575,1576,1578;E-values=6.80e-48,1.60e-26,4.80e-40,1.70e-68,3.50e-20,2.90e-142,4.60e-25,1.20e-18,1.50e-83,1.10e-26;CoverageSeq=0.783,0.842,0.977,0.826,0.684,0.813,0.902,0.615,0.929,0.914;CoverageHMM=0.95,0.36,0.975,0.972,0.955,0.92,0.822,0.835,0.991,0.673;Strand_Interference=-1;Strand_Adaptation=NA
SEQF4403.1|KQ969062.1	CCTyper	CDS	1576685	1579015	777	-	.	ID=SEQF4403.1|KQ969062.1_1573_cas;Genome_ID=SEQF4403.1;Feature_type=CDS;Product=Cas Prediction : Cas10_1_CAS-III;coding_strand=-;E-value=2.9e-142;Score=472.4;Coverage_Seq=0.8133848133848134;Coverage_Hmm=0.9204892966360856
SEQF4403.1|KQ969062.1	CCTyper	CDS	1580994	1582013	340	-	.	ID=SEQF4403.1|KQ969062.1_1576_cas;Genome_ID=SEQF4403.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.4999999999999999e-83;Score=277.5;Coverage_Seq=0.9294117647058824;Coverage_Hmm=0.9905362776025236
SEQF4403.1|KQ969062.1	CCTyper	CDS	1580681	1581007	109	-	.	ID=SEQF4403.1|KQ969062.1_1575_cas;Genome_ID=SEQF4403.1;Feature_type=CDS;Product=Cas Prediction : Cas2_2_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.2e-18;Score=64.1;Coverage_Seq=0.6146788990825688;Coverage_Hmm=0.8354430379746836
SEQF4403.1|KQ969062.1	CCTyper	CDS	1578996	1579730	245	-	.	ID=SEQF4403.1|KQ969062.1_1574_cas;Genome_ID=SEQF4403.1;Feature_type=CDS;Product=Cas Prediction : Cas6_8_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=4.6e-25;Score=85.5;Coverage_Seq=0.9020408163265307;Coverage_Hmm=0.8218181818181818
SEQF4403.1|KQ969062.1	CCTyper	CDS	1576192	1576713	174	-	.	ID=SEQF4403.1|KQ969062.1_1572_cas;Genome_ID=SEQF4403.1;Feature_type=CDS;Product=Cas Prediction : Csm2gr11_7_CAS-III-A;coding_strand=-;E-value=3.5e-20;Score=70.1;Coverage_Seq=0.6839080459770115;Coverage_Hmm=0.9545454545454546
SEQF4403.1|KQ969062.1	CCTyper	CDS	1575470	1576195	242	-	.	ID=SEQF4403.1|KQ969062.1_1571_cas;Genome_ID=SEQF4403.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_1_CAS-III-A-III-D;coding_strand=-;E-value=1.6999999999999999e-68;Score=227.6;Coverage_Seq=0.8264462809917356;Coverage_Hmm=0.9720930232558139
SEQF4403.1|KQ969062.1	CCTyper	CDS	1574550	1575458	303	-	.	ID=SEQF4403.1|KQ969062.1_1570_cas;Genome_ID=SEQF4403.1;Feature_type=CDS;Product=Cas Prediction : Csm4gr5_1_CAS-III-A;coding_strand=-;E-value=4.8e-40;Score=134.7;Coverage_Seq=0.976897689768977;Coverage_Hmm=0.9746031746031746
SEQF4403.1|KQ969062.1	CCTyper	CDS	1574041	1574553	171	-	.	ID=SEQF4403.1|KQ969062.1_1569_cas;Genome_ID=SEQF4403.1;Feature_type=CDS;Product=Cas Prediction : Csm5gr7_1_CAS-III-A-III-D;coding_strand=-;E-value=1.6e-26;Score=90.9;Coverage_Seq=0.8421052631578947;Coverage_Hmm=0.3604336043360434
SEQF4403.1|KQ969062.1	CCTyper	CDS	1572027	1573409	461	-	.	ID=SEQF4403.1|KQ969062.1_1567_cas;Genome_ID=SEQF4403.1;Feature_type=CDS;Product=Cas Prediction : Csm6_3_CAS-III;coding_strand=-;E-value=6.8e-48;Score=160.4;Coverage_Seq=0.7830802603036876;Coverage_Hmm=0.9502617801047121
SEQF4403.1|KQ969062.1	CCTyper	CDS	1582772	1583572	267	-	.	ID=SEQF4403.1|KQ969062.1_1578_cas;Genome_ID=SEQF4403.1;Feature_type=CDS;Product=Cas Prediction : Csm6_7_CAS-III;coding_strand=-;E-value=1.1e-26;Score=90.6;Coverage_Seq=0.9138576779026217;Coverage_Hmm=0.6729222520107239