SEQF4415.1|RJPO01000002.1	CCTyper	repeat_region	89115	90606	1492	+	.	ID=SEQF4415.1|RJPO01000002.1_1;Genome_ID=SEQF4415.1;Note=Predictor:CCtyper;Start:89115;End:90606;Consensus_Repeat:ATTTCAATCCACGCCCCCGTGAAGGGAGCGAC;Number_of_Repeats:23;Repeat_Length:32;Average_Spacer_Length:34.4;Repeat_Identity:91.6;Spacer_Identity:40.3;Spacer_Length_Sem:0.2;Trusted:True;Cas_Type_Prediction: I-C;Cas_Subtype_Prediction:I-C;Subtype_Probability:0.837;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	direct_repeat	89115	89146	32	+	.	ID=SEQF4415.1|RJPO01000002.1_1_REPEAT1;Parent=SEQF4415.1|RJPO01000002.1_1;Note=TGCTTAATCCACGCCTCCGTGAAGAGAGCGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	binding_site	89147	89179	33	+	.	ID=SEQF4415.1|RJPO01000002.1_1_SPACER1;Parent=SEQF4415.1|RJPO01000002.1_1;Note=TTAAAAAATCAAATAAACTTTATCAGTTTATCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	direct_repeat	89180	89211	32	+	.	ID=SEQF4415.1|RJPO01000002.1_1_REPEAT2;Parent=SEQF4415.1|RJPO01000002.1_1;Note=ATTTCAATCCACGCTCCTGTGAAGAGAGCGAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	binding_site	89212	89248	37	+	.	ID=SEQF4415.1|RJPO01000002.1_1_SPACER2;Parent=SEQF4415.1|RJPO01000002.1_1;Note=CTTCAGGGTCCAGAGACGTATCTGCATCCTAATTTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	direct_repeat	89249	89280	32	+	.	ID=SEQF4415.1|RJPO01000002.1_1_REPEAT3;Parent=SEQF4415.1|RJPO01000002.1_1;Note=ATTTCAATCCACGCCCCCGTGAAGGGAGCGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	binding_site	89281	89314	34	+	.	ID=SEQF4415.1|RJPO01000002.1_1_SPACER3;Parent=SEQF4415.1|RJPO01000002.1_1;Note=CGGGTACATCGTATTTACTTTTCAATCACTCATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	direct_repeat	89315	89346	32	+	.	ID=SEQF4415.1|RJPO01000002.1_1_REPEAT4;Parent=SEQF4415.1|RJPO01000002.1_1;Note=ATTTCAATCCACGCCCCCGTGAAGGGAGCGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	binding_site	89347	89380	34	+	.	ID=SEQF4415.1|RJPO01000002.1_1_SPACER4;Parent=SEQF4415.1|RJPO01000002.1_1;Note=TCGCTGGCGGTGACACACACACAATTATTTATCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	direct_repeat	89381	89412	32	+	.	ID=SEQF4415.1|RJPO01000002.1_1_REPEAT5;Parent=SEQF4415.1|RJPO01000002.1_1;Note=ATTTCAATCCACGCCCCCGTGAAGGGAGCGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	binding_site	89413	89445	33	+	.	ID=SEQF4415.1|RJPO01000002.1_1_SPACER5;Parent=SEQF4415.1|RJPO01000002.1_1;Note=GATTTACCAGAATCTATTCAAAATGCGATTGAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	direct_repeat	89446	89477	32	+	.	ID=SEQF4415.1|RJPO01000002.1_1_REPEAT6;Parent=SEQF4415.1|RJPO01000002.1_1;Note=ATTTCAATCCACGCCCCCGTGAAGGGAGCGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	binding_site	89478	89511	34	+	.	ID=SEQF4415.1|RJPO01000002.1_1_SPACER6;Parent=SEQF4415.1|RJPO01000002.1_1;Note=GACACCTCTATTTTAGAAGTTCCAAACGCTGTAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	direct_repeat	89512	89543	32	+	.	ID=SEQF4415.1|RJPO01000002.1_1_REPEAT7;Parent=SEQF4415.1|RJPO01000002.1_1;Note=ATTTCAATCCACGCCCCCGTGAAGGGAGCGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	binding_site	89544	89577	34	+	.	ID=SEQF4415.1|RJPO01000002.1_1_SPACER7;Parent=SEQF4415.1|RJPO01000002.1_1;Note=GACAACACACGGTACAGTATCTGCTGGTGCTGGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	direct_repeat	89578	89609	32	+	.	ID=SEQF4415.1|RJPO01000002.1_1_REPEAT8;Parent=SEQF4415.1|RJPO01000002.1_1;Note=ATTTCAATCCACGCCCCCGTGAAGGGAGCGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	binding_site	89610	89644	35	+	.	ID=SEQF4415.1|RJPO01000002.1_1_SPACER8;Parent=SEQF4415.1|RJPO01000002.1_1;Note=GATAGCCAGCGAGCCCTAGGCTATGATGAACCTAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	direct_repeat	89645	89676	32	+	.	ID=SEQF4415.1|RJPO01000002.1_1_REPEAT9;Parent=SEQF4415.1|RJPO01000002.1_1;Note=ATTTCAATCCACGCCCCCGTGAAGGGAGCGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	binding_site	89677	89710	34	+	.	ID=SEQF4415.1|RJPO01000002.1_1_SPACER9;Parent=SEQF4415.1|RJPO01000002.1_1;Note=GAAAGGCGCAGACGGCGACACCGAGAGCAACTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	direct_repeat	89711	89742	32	+	.	ID=SEQF4415.1|RJPO01000002.1_1_REPEAT10;Parent=SEQF4415.1|RJPO01000002.1_1;Note=ATTTCAATCCACGCCCCCGTGAAGGGAGCGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	binding_site	89743	89777	35	+	.	ID=SEQF4415.1|RJPO01000002.1_1_SPACER10;Parent=SEQF4415.1|RJPO01000002.1_1;Note=GTCTTATTCCCCCAAACATAGCGGACAGTATGCTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	direct_repeat	89778	89809	32	+	.	ID=SEQF4415.1|RJPO01000002.1_1_REPEAT11;Parent=SEQF4415.1|RJPO01000002.1_1;Note=ATTTCAATCCACGCCCCCGTGAAGGGAGCGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	binding_site	89810	89842	33	+	.	ID=SEQF4415.1|RJPO01000002.1_1_SPACER11;Parent=SEQF4415.1|RJPO01000002.1_1;Note=TTTGCTGCAGGCTATTTTTGGCTGGCAGCTTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	direct_repeat	89843	89874	32	+	.	ID=SEQF4415.1|RJPO01000002.1_1_REPEAT12;Parent=SEQF4415.1|RJPO01000002.1_1;Note=ATTTCAATCCACGCCCCCGTGAAGGGAGCGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	binding_site	89875	89910	36	+	.	ID=SEQF4415.1|RJPO01000002.1_1_SPACER12;Parent=SEQF4415.1|RJPO01000002.1_1;Note=AAGATGAATGCTTTAGTTTTTCATAATGAAGATTGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	direct_repeat	89911	89942	32	+	.	ID=SEQF4415.1|RJPO01000002.1_1_REPEAT13;Parent=SEQF4415.1|RJPO01000002.1_1;Note=ATTTCAATCCACGCCCCCGTGAAGGGAGCGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	binding_site	89943	89976	34	+	.	ID=SEQF4415.1|RJPO01000002.1_1_SPACER13;Parent=SEQF4415.1|RJPO01000002.1_1;Note=TTGCTGCATCATTCAAGACAATCGCTGATAACGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	direct_repeat	89977	90008	32	+	.	ID=SEQF4415.1|RJPO01000002.1_1_REPEAT14;Parent=SEQF4415.1|RJPO01000002.1_1;Note=ATTTCAATCCACGCCCCCGTGAAGGGAGCGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	binding_site	90009	90042	34	+	.	ID=SEQF4415.1|RJPO01000002.1_1_SPACER14;Parent=SEQF4415.1|RJPO01000002.1_1;Note=CCATGCAAATCTACACCCATGTCACAAAAAGTAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	direct_repeat	90043	90074	32	+	.	ID=SEQF4415.1|RJPO01000002.1_1_REPEAT15;Parent=SEQF4415.1|RJPO01000002.1_1;Note=ATTTCAATCCACGCCCCCGTGAAGGGAGCGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	binding_site	90075	90110	36	+	.	ID=SEQF4415.1|RJPO01000002.1_1_SPACER15;Parent=SEQF4415.1|RJPO01000002.1_1;Note=GACAGGGGTTTCTACTGTGGGGTGGAGCGATGGCAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	direct_repeat	90111	90142	32	+	.	ID=SEQF4415.1|RJPO01000002.1_1_REPEAT16;Parent=SEQF4415.1|RJPO01000002.1_1;Note=ATTTCAATCCACGCCCCCGTGAAGGGAGCGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	binding_site	90143	90176	34	+	.	ID=SEQF4415.1|RJPO01000002.1_1_SPACER16;Parent=SEQF4415.1|RJPO01000002.1_1;Note=GAGCTAGCTTCTTCATGCCGTCCCACAGTTTACT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	direct_repeat	90177	90208	32	+	.	ID=SEQF4415.1|RJPO01000002.1_1_REPEAT17;Parent=SEQF4415.1|RJPO01000002.1_1;Note=ATTTCAATCCACGCCCCCGTGAAGGGAGCGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	binding_site	90209	90242	34	+	.	ID=SEQF4415.1|RJPO01000002.1_1_SPACER17;Parent=SEQF4415.1|RJPO01000002.1_1;Note=AAAGCGCTCATTGTTGATACTTTGGGTGATATCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	direct_repeat	90243	90274	32	+	.	ID=SEQF4415.1|RJPO01000002.1_1_REPEAT18;Parent=SEQF4415.1|RJPO01000002.1_1;Note=ATTTCAATCCACGCCCCCGTGAAGGGAGCGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	binding_site	90275	90308	34	+	.	ID=SEQF4415.1|RJPO01000002.1_1_SPACER18;Parent=SEQF4415.1|RJPO01000002.1_1;Note=TGTTTTTGAGATTTCTGATATTGTTTCTCATTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	direct_repeat	90309	90340	32	+	.	ID=SEQF4415.1|RJPO01000002.1_1_REPEAT19;Parent=SEQF4415.1|RJPO01000002.1_1;Note=ATTTCAATCCACGCCCCCGTGAAGGGAGCGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	binding_site	90341	90374	34	+	.	ID=SEQF4415.1|RJPO01000002.1_1_SPACER19;Parent=SEQF4415.1|RJPO01000002.1_1;Note=AGTAAAGGCTGATTTAATGCCGTCCCATAAATTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	direct_repeat	90375	90406	32	+	.	ID=SEQF4415.1|RJPO01000002.1_1_REPEAT20;Parent=SEQF4415.1|RJPO01000002.1_1;Note=ATTTCAATCCACGCCCCCGTGAAGGGAGCGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	binding_site	90407	90440	34	+	.	ID=SEQF4415.1|RJPO01000002.1_1_SPACER20;Parent=SEQF4415.1|RJPO01000002.1_1;Note=CGTCACGGTACTTCCGTTATTCGCAATGATGATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	direct_repeat	90441	90472	32	+	.	ID=SEQF4415.1|RJPO01000002.1_1_REPEAT21;Parent=SEQF4415.1|RJPO01000002.1_1;Note=ATTTCAATCCACGCCCCCGTGAAGGGAGCGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	binding_site	90473	90508	36	+	.	ID=SEQF4415.1|RJPO01000002.1_1_SPACER21;Parent=SEQF4415.1|RJPO01000002.1_1;Note=AGGAATGTCCAGAGACAAGGAAAAGCGCTTGGCAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	direct_repeat	90509	90540	32	+	.	ID=SEQF4415.1|RJPO01000002.1_1_REPEAT22;Parent=SEQF4415.1|RJPO01000002.1_1;Note=ATTTCAATCCACGCCCCCGTGAAGGGAGCGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	binding_site	90541	90574	34	+	.	ID=SEQF4415.1|RJPO01000002.1_1_SPACER22;Parent=SEQF4415.1|RJPO01000002.1_1;Note=CTTCTGGATTTTCAATAAACCTAGTCTCTCCCAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	direct_repeat	90575	90606	32	+	.	ID=SEQF4415.1|RJPO01000002.1_1_REPEAT23;Parent=SEQF4415.1|RJPO01000002.1_1;Note=ATTTCAATCCACGCCCCCGTGAAGGGAGCGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000004.1	CCTyper	repeat_region	142944	143838	895	+	.	ID=SEQF4415.1|RJPO01000004.1_2;Genome_ID=SEQF4415.1;Note=Predictor:CCtyper;Start:142944;End:143838;Consensus_Repeat:GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Number_of_Repeats:14;Repeat_Length:36;Average_Spacer_Length:30.1;Repeat_Identity:100.0;Spacer_Identity:41.9;Spacer_Length_Sem:0.1;Trusted:True;Cas_Type_Prediction: II-C;Cas_Subtype_Prediction:II-C;Subtype_Probability:0.946;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000004.1	CCTyper	direct_repeat	142944	142979	36	+	.	ID=SEQF4415.1|RJPO01000004.1_2_REPEAT1;Parent=SEQF4415.1|RJPO01000004.1_2;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000004.1	CCTyper	binding_site	142980	143009	30	+	.	ID=SEQF4415.1|RJPO01000004.1_2_SPACER1;Parent=SEQF4415.1|RJPO01000004.1_2;Note=AATCATAAAAAATAATCATATGTCTCATTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000004.1	CCTyper	direct_repeat	143010	143045	36	+	.	ID=SEQF4415.1|RJPO01000004.1_2_REPEAT2;Parent=SEQF4415.1|RJPO01000004.1_2;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000004.1	CCTyper	binding_site	143046	143075	30	+	.	ID=SEQF4415.1|RJPO01000004.1_2_SPACER2;Parent=SEQF4415.1|RJPO01000004.1_2;Note=ATTTAGGCGTATAAGGGCCGAAGTAGTTCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000004.1	CCTyper	direct_repeat	143076	143111	36	+	.	ID=SEQF4415.1|RJPO01000004.1_2_REPEAT3;Parent=SEQF4415.1|RJPO01000004.1_2;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000004.1	CCTyper	binding_site	143112	143141	30	+	.	ID=SEQF4415.1|RJPO01000004.1_2_SPACER3;Parent=SEQF4415.1|RJPO01000004.1_2;Note=TGTTTCTCAAAACAGAGTCAGCGACATTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000004.1	CCTyper	direct_repeat	143142	143177	36	+	.	ID=SEQF4415.1|RJPO01000004.1_2_REPEAT4;Parent=SEQF4415.1|RJPO01000004.1_2;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000004.1	CCTyper	binding_site	143178	143207	30	+	.	ID=SEQF4415.1|RJPO01000004.1_2_SPACER4;Parent=SEQF4415.1|RJPO01000004.1_2;Note=AGTGTTGTCATAAAATCAATAACATCAAGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000004.1	CCTyper	direct_repeat	143208	143243	36	+	.	ID=SEQF4415.1|RJPO01000004.1_2_REPEAT5;Parent=SEQF4415.1|RJPO01000004.1_2;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000004.1	CCTyper	binding_site	143244	143273	30	+	.	ID=SEQF4415.1|RJPO01000004.1_2_SPACER5;Parent=SEQF4415.1|RJPO01000004.1_2;Note=GGAGGAGACTATGGCACAGCGGAGGATGTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000004.1	CCTyper	direct_repeat	143274	143309	36	+	.	ID=SEQF4415.1|RJPO01000004.1_2_REPEAT6;Parent=SEQF4415.1|RJPO01000004.1_2;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000004.1	CCTyper	binding_site	143310	143339	30	+	.	ID=SEQF4415.1|RJPO01000004.1_2_SPACER6;Parent=SEQF4415.1|RJPO01000004.1_2;Note=CCTGTTCTTTACTCATAAAGTTTTGGTTCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000004.1	CCTyper	direct_repeat	143340	143375	36	+	.	ID=SEQF4415.1|RJPO01000004.1_2_REPEAT7;Parent=SEQF4415.1|RJPO01000004.1_2;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000004.1	CCTyper	binding_site	143376	143405	30	+	.	ID=SEQF4415.1|RJPO01000004.1_2_SPACER7;Parent=SEQF4415.1|RJPO01000004.1_2;Note=TTTTCTCCCGTAAATCTTCATTCTCGGATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000004.1	CCTyper	direct_repeat	143406	143441	36	+	.	ID=SEQF4415.1|RJPO01000004.1_2_REPEAT8;Parent=SEQF4415.1|RJPO01000004.1_2;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000004.1	CCTyper	binding_site	143442	143471	30	+	.	ID=SEQF4415.1|RJPO01000004.1_2_SPACER8;Parent=SEQF4415.1|RJPO01000004.1_2;Note=TAAATTTATTGATTTTATGATCGCTGAATA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000004.1	CCTyper	direct_repeat	143472	143507	36	+	.	ID=SEQF4415.1|RJPO01000004.1_2_REPEAT9;Parent=SEQF4415.1|RJPO01000004.1_2;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000004.1	CCTyper	binding_site	143508	143537	30	+	.	ID=SEQF4415.1|RJPO01000004.1_2_SPACER9;Parent=SEQF4415.1|RJPO01000004.1_2;Note=TACGTGAAGTAGATGTTTCTTAAATCATTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000004.1	CCTyper	direct_repeat	143538	143573	36	+	.	ID=SEQF4415.1|RJPO01000004.1_2_REPEAT10;Parent=SEQF4415.1|RJPO01000004.1_2;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000004.1	CCTyper	binding_site	143574	143603	30	+	.	ID=SEQF4415.1|RJPO01000004.1_2_SPACER10;Parent=SEQF4415.1|RJPO01000004.1_2;Note=AAACTGTTCCTTTTACAGCCAATGATCCAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000004.1	CCTyper	direct_repeat	143604	143639	36	+	.	ID=SEQF4415.1|RJPO01000004.1_2_REPEAT11;Parent=SEQF4415.1|RJPO01000004.1_2;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000004.1	CCTyper	binding_site	143640	143669	30	+	.	ID=SEQF4415.1|RJPO01000004.1_2_SPACER11;Parent=SEQF4415.1|RJPO01000004.1_2;Note=GATTTCTCAGGATTCTATATTGCTTTCAGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000004.1	CCTyper	direct_repeat	143670	143705	36	+	.	ID=SEQF4415.1|RJPO01000004.1_2_REPEAT12;Parent=SEQF4415.1|RJPO01000004.1_2;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000004.1	CCTyper	binding_site	143706	143735	30	+	.	ID=SEQF4415.1|RJPO01000004.1_2_SPACER12;Parent=SEQF4415.1|RJPO01000004.1_2;Note=CCACATCAGAAATAATCCCTTTTTTCTTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000004.1	CCTyper	direct_repeat	143736	143771	36	+	.	ID=SEQF4415.1|RJPO01000004.1_2_REPEAT13;Parent=SEQF4415.1|RJPO01000004.1_2;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000004.1	CCTyper	binding_site	143772	143802	31	+	.	ID=SEQF4415.1|RJPO01000004.1_2_SPACER13;Parent=SEQF4415.1|RJPO01000004.1_2;Note=CATCTTGCCTTGCGTGTTGACTGTAGCTTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000004.1	CCTyper	direct_repeat	143803	143838	36	+	.	ID=SEQF4415.1|RJPO01000004.1_2_REPEAT14;Parent=SEQF4415.1|RJPO01000004.1_2;Note=GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4415.1|RJPO01000002.1	CCTyper	OPERON	90753	98896	8144	-	.	ID=SEQF4415.1|RJPO01000002.1@3;Genome_ID=SEQF4415.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type I-C;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=I-C;Best_score=21.0;Genes=Cas2_4_CAS-I-II-III-IV-V-VI,Cas1_0_IC,Cas4_0_I-II,Cas7_2_CAS-I-C,Cas8c_0_IC,Cas5_0_IC,Cas3_1_CAS-I;Positions=84,85,86,87,88,89,90;E-values=2.70e-30,2.00e-145,4.20e-36,1.90e-125,1.50e-135,1.30e-91,1.40e-110;CoverageSeq=0.929,0.988,0.844,0.993,0.981,0.827,0.886;CoverageHMM=0.978,0.997,0.983,0.989,0.997,0.995,0.949;Strand_Interference=-1;Strand_Adaptation=-1
SEQF4415.1|RJPO01000004.1	CCTyper	OPERON	137032	146981	9950	+	.	ID=SEQF4415.1|RJPO01000004.1@5;Genome_ID=SEQF4415.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type II-A;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=II-A;Best_score=9.0;Genes=Cas9_0_II,Cas1_4_CAS-I-II-III-IV-V-VI,Cas2_5_CAS-I-II-III-IV-V-VI,Csn2_2_CAS-II-A,AbiEii_0_CAS-III;Positions=125,126,127,128,132;E-values=1.30e-205,6.70e-96,2.40e-32,2.70e-128,1.40e-07;CoverageSeq=0.698,0.911,0.981,0.994,0.55;CoverageHMM=0.982,0.956,0.871,1.0,0.426;Strand_Interference=1;Strand_Adaptation=1
SEQF4415.1|RJPO01000004.1	CCTyper	CDS	146316	146981	222	+	.	ID=SEQF4415.1|RJPO01000004.1_132_cas;Genome_ID=SEQF4415.1;Feature_type=CDS;Product=Cas Prediction : AbiEii_0_CAS-III;coding_strand=+;E-value=1.4e-07;Score=28.4;Coverage_Seq=0.5495495495495496;Coverage_Hmm=0.426056338028169
SEQF4415.1|RJPO01000002.1	CCTyper	CDS	91057	92082	342	-	.	ID=SEQF4415.1|RJPO01000002.1_85_cas;Genome_ID=SEQF4415.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_IC;coding_strand=-;E-value=2.0000000000000002e-145;Score=481.2;Coverage_Seq=0.9883040935672515;Coverage_Hmm=0.9970588235294118
SEQF4415.1|RJPO01000004.1	CCTyper	CDS	140636	141508	291	+	.	ID=SEQF4415.1|RJPO01000004.1_126_cas;Genome_ID=SEQF4415.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=6.6999999999999996e-96;Score=317.7;Coverage_Seq=0.9106529209621993;Coverage_Hmm=0.9563636363636364
SEQF4415.1|RJPO01000002.1	CCTyper	CDS	90753	91046	98	-	.	ID=SEQF4415.1|RJPO01000002.1_84_cas;Genome_ID=SEQF4415.1;Feature_type=CDS;Product=Cas Prediction : Cas2_4_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=2.7000000000000002e-30;Score=101.7;Coverage_Seq=0.9285714285714286;Coverage_Hmm=0.9775280898876404
SEQF4415.1|RJPO01000004.1	CCTyper	CDS	141525	141833	103	+	.	ID=SEQF4415.1|RJPO01000004.1_127_cas;Genome_ID=SEQF4415.1;Feature_type=CDS;Product=Cas Prediction : Cas2_5_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=2.4e-32;Score=108.6;Coverage_Seq=0.9805825242718447;Coverage_Hmm=0.8706896551724138
SEQF4415.1|RJPO01000002.1	CCTyper	CDS	96482	98896	805	-	.	ID=SEQF4415.1|RJPO01000002.1_90_cas;Genome_ID=SEQF4415.1;Feature_type=CDS;Product=Cas Prediction : Cas3_1_CAS-I;coding_strand=-;E-value=1.4e-110;Score=367.8;Coverage_Seq=0.8857142857142857;Coverage_Hmm=0.9489932885906041
SEQF4415.1|RJPO01000002.1	CCTyper	CDS	92079	92750	224	-	.	ID=SEQF4415.1|RJPO01000002.1_86_cas;Genome_ID=SEQF4415.1;Feature_type=CDS;Product=Cas Prediction : Cas4_0_I-II;coding_strand=-;E-value=4.2000000000000005e-36;Score=121.5;Coverage_Seq=0.84375;Coverage_Hmm=0.9833333333333333
SEQF4415.1|RJPO01000002.1	CCTyper	CDS	95508	96236	243	-	.	ID=SEQF4415.1|RJPO01000002.1_89_cas;Genome_ID=SEQF4415.1;Feature_type=CDS;Product=Cas Prediction : Cas5_0_IC;coding_strand=-;E-value=1.3e-91;Score=303.3;Coverage_Seq=0.8271604938271605;Coverage_Hmm=0.9950738916256158
SEQF4415.1|RJPO01000002.1	CCTyper	CDS	92752	93603	284	-	.	ID=SEQF4415.1|RJPO01000002.1_87_cas;Genome_ID=SEQF4415.1;Feature_type=CDS;Product=Cas Prediction : Cas7_2_CAS-I-C;coding_strand=-;E-value=1.9e-125;Score=414.9;Coverage_Seq=0.9929577464788732;Coverage_Hmm=0.9893992932862191
SEQF4415.1|RJPO01000002.1	CCTyper	CDS	93607	95508	634	-	.	ID=SEQF4415.1|RJPO01000002.1_88_cas;Genome_ID=SEQF4415.1;Feature_type=CDS;Product=Cas Prediction : Cas8c_0_IC;coding_strand=-;E-value=1.5e-135;Score=450.0;Coverage_Seq=0.9810725552050473;Coverage_Hmm=0.9965986394557823
SEQF4415.1|RJPO01000004.1	CCTyper	CDS	137032	140424	1131	+	.	ID=SEQF4415.1|RJPO01000004.1_125_cas;Genome_ID=SEQF4415.1;Feature_type=CDS;Product=Cas Prediction : Cas9_0_II;coding_strand=+;E-value=1.3e-205;Score=682.4;Coverage_Seq=0.6976127320954907;Coverage_Hmm=0.9819277108433735
SEQF4415.1|RJPO01000004.1	CCTyper	CDS	141830	142873	348	+	.	ID=SEQF4415.1|RJPO01000004.1_128_cas;Genome_ID=SEQF4415.1;Feature_type=CDS;Product=Cas Prediction : Csn2_2_CAS-II-A;coding_strand=+;E-value=2.7e-128;Score=424.7;Coverage_Seq=0.9942528735632183;Coverage_Hmm=1.0