SEQF4544.1|QKZO01000011.1	CCTyper	repeat_region	41457	41619	163	+	.	ID=SEQF4544.1|QKZO01000011.1_1;Genome_ID=SEQF4544.1;Note=Predictor:CCtyper;Start:41457;End:41619;Consensus_Repeat:AACCGGCAGGGCCGCCGGACGCGGTGCCAGAC;Number_of_Repeats:3;Repeat_Length:32;Average_Spacer_Length:33.5;Repeat_Identity:100.0;Spacer_Identity:45.7;Spacer_Length_Sem:0.5;Trusted:True;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:V-F2;Subtype_Probability:0.661;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4544.1|QKZO01000011.1	CCTyper	direct_repeat	41457	41488	32	+	.	ID=SEQF4544.1|QKZO01000011.1_1_REPEAT1;Parent=SEQF4544.1|QKZO01000011.1_1;Note=AACCGGCAGGGCCGCCGGACGCGGTGCCAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4544.1|QKZO01000011.1	CCTyper	binding_site	41489	41522	34	+	.	ID=SEQF4544.1|QKZO01000011.1_1_SPACER1;Parent=SEQF4544.1|QKZO01000011.1_1;Note=AAAAGCGAACACTTCCACGACTCGATCGAGTGCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4544.1|QKZO01000011.1	CCTyper	direct_repeat	41523	41554	32	+	.	ID=SEQF4544.1|QKZO01000011.1_1_REPEAT2;Parent=SEQF4544.1|QKZO01000011.1_1;Note=AACCGGCAGGGCCGCCGGACGCGGTGCCAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4544.1|QKZO01000011.1	CCTyper	binding_site	41555	41587	33	+	.	ID=SEQF4544.1|QKZO01000011.1_1_SPACER2;Parent=SEQF4544.1|QKZO01000011.1_1;Note=ATCTTCAAAAACTTATGAGGCAGTAAAAGTGCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4544.1|QKZO01000011.1	CCTyper	direct_repeat	41588	41619	32	+	.	ID=SEQF4544.1|QKZO01000011.1_1_REPEAT3;Parent=SEQF4544.1|QKZO01000011.1_1;Note=AACCGGCAGGGCCGCCGGACGCGGTGCCAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4544.1|QKZO01000011.1	CCTyper	repeat_region	44247	44469	223	+	.	ID=SEQF4544.1|QKZO01000011.1_2;Genome_ID=SEQF4544.1;Note=Predictor:CCtyper;Start:44247;End:44469;Consensus_Repeat:GTCCGGCGGCCCTGCCGGTTGGCAC;Number_of_Repeats:4;Repeat_Length:25;Average_Spacer_Length:41.0;Repeat_Identity:86.2;Spacer_Identity:50.0;Spacer_Length_Sem:0.6;Trusted:True;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:V-F2;Subtype_Probability:0.554;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4544.1|QKZO01000011.1	CCTyper	direct_repeat	44247	44271	25	+	.	ID=SEQF4544.1|QKZO01000011.1_2_REPEAT1;Parent=SEQF4544.1|QKZO01000011.1_2;Note=GTCCGGCGGCCCTGCCGGTTGGCAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4544.1|QKZO01000011.1	CCTyper	binding_site	44272	44313	42	+	.	ID=SEQF4544.1|QKZO01000011.1_2_SPACER1;Parent=SEQF4544.1|QKZO01000011.1_2;Note=GTGACCGTCGCCATCAGAACGCCCCCGTTCGTCTGGCACCAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4544.1|QKZO01000011.1	CCTyper	direct_repeat	44314	44338	25	+	.	ID=SEQF4544.1|QKZO01000011.1_2_REPEAT2;Parent=SEQF4544.1|QKZO01000011.1_2;Note=GTCCGGCGGCCCTGCCGGTTGGCAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4544.1|QKZO01000011.1	CCTyper	binding_site	44339	44379	41	+	.	ID=SEQF4544.1|QKZO01000011.1_2_SPACER2;Parent=SEQF4544.1|QKZO01000011.1_2;Note=AATATCAGTGACCCCCCGACATCAGTTTTGTCTGGCACCAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4544.1|QKZO01000011.1	CCTyper	direct_repeat	44380	44404	25	+	.	ID=SEQF4544.1|QKZO01000011.1_2_REPEAT3;Parent=SEQF4544.1|QKZO01000011.1_2;Note=GTCCGGCGGCCCTGCCGGTTGGCAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4544.1|QKZO01000011.1	CCTyper	binding_site	44405	44444	40	+	.	ID=SEQF4544.1|QKZO01000011.1_2_SPACER3;Parent=SEQF4544.1|QKZO01000011.1_2;Note=CCACGGGTTGCTCTCCAGGCCTGTGTTGGTCTGGCACCGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4544.1|QKZO01000011.1	CCTyper	direct_repeat	44445	44469	25	+	.	ID=SEQF4544.1|QKZO01000011.1_2_REPEAT4;Parent=SEQF4544.1|QKZO01000011.1_2;Note=GTCCGGCGGCCCTGCCGATGATGCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4544.1|QKZO01000012.1	CCTyper	repeat_region	105002	105152	151	+	.	ID=SEQF4544.1|QKZO01000012.1_3;Genome_ID=SEQF4544.1;Note=Predictor:CCtyper;Start:105002;End:105152;Consensus_Repeat:CGGTTCATCCCCGCGTGGGCGGGGAACAG;Number_of_Repeats:3;Repeat_Length:29;Average_Spacer_Length:32.0;Repeat_Identity:100.0;Spacer_Identity:45.5;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: I-E;Cas_Subtype_Prediction:I-E;Subtype_Probability:0.999;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4544.1|QKZO01000012.1	CCTyper	direct_repeat	105002	105030	29	+	.	ID=SEQF4544.1|QKZO01000012.1_3_REPEAT1;Parent=SEQF4544.1|QKZO01000012.1_3;Note=CGGTTCATCCCCGCGTGGGCGGGGAACAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4544.1|QKZO01000012.1	CCTyper	binding_site	105031	105062	32	+	.	ID=SEQF4544.1|QKZO01000012.1_3_SPACER1;Parent=SEQF4544.1|QKZO01000012.1_3;Note=GAAATCGACCTCGGGGCGCCCTTCCTTCAAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4544.1|QKZO01000012.1	CCTyper	direct_repeat	105063	105091	29	+	.	ID=SEQF4544.1|QKZO01000012.1_3_REPEAT2;Parent=SEQF4544.1|QKZO01000012.1_3;Note=CGGTTCATCCCCGCGTGGGCGGGGAACAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4544.1|QKZO01000012.1	CCTyper	binding_site	105092	105123	32	+	.	ID=SEQF4544.1|QKZO01000012.1_3_SPACER2;Parent=SEQF4544.1|QKZO01000012.1_3;Note=CACTTTTAACCGCGCCCCGCTGCATACTAAGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4544.1|QKZO01000012.1	CCTyper	direct_repeat	105124	105152	29	+	.	ID=SEQF4544.1|QKZO01000012.1_3_REPEAT3;Parent=SEQF4544.1|QKZO01000012.1_3;Note=CGGTTCATCCCCGCGTGGGCGGGGAACAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF4544.1|QKZO01000019.1	CCTyper	OPERON	2901	13264	10364	+	.	ID=SEQF4544.1|QKZO01000019.1@1;Genome_ID=SEQF4544.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type I-E;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=I-E;Best_score=26.0;Genes=WYL_3_CAS-I-II-III-IV-V-VI,WYL_0_CAS-I-II-III-IV-V-VI,Cas3_0_CAS-I,Cas8e_1_CAS-I-E,Cse2gr11_1_CAS-I-E,Cas7_1_CAS-I-E,Cas5_0_CAS-I-E,Cas6e_2_CAS-I-II-III-IV-V-VI,Cas1_0_IE,Cas2_10_CAS-I-II-III-IV-V-VI;Positions=6,7,8,9,10,11,12,13,14,15;E-values=9.30e-32,1.60e-13,1.10e-57,2.50e-86,5.20e-19,5.70e-94,1.30e-39,1.00e-46,8.00e-108,3.70e-36;CoverageSeq=0.567,0.659,0.416,0.876,0.733,0.914,0.75,0.973,0.826,0.915;CoverageHMM=0.953,0.415,0.907,0.996,0.986,0.919,0.967,1.0,0.993,1.0;Strand_Interference=1;Strand_Adaptation=1
SEQF4544.1|QKZO01000011.1	CCTyper	OPERON	32960	46902	13943	+	.	ID=SEQF4544.1|QKZO01000011.1@1;Genome_ID=SEQF4544.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-D;Complete_Interference=33%;Complete_Adaptation=NA;Best_type=III-D;Best_score=11.0;Genes=Cas6_10_CAS-I-II-III-IV-V-VI,Cas10_3_CAS-III,Csm4gr5_0_CAS-III-D,Csm3gr7_0_CAS-III-A-III-D,Csm3gr7_4_CAS-III-A-III-D,RT_0_CAS-III-AM-III-B,Cas2_2_CAS-I-II-III-IV-V-VI,DHH_CorA_0_CAS-III-B,CorA_0_CAS-III-B-III-D;Positions=16,17,18,19,20,21,22,23,24;E-values=9.10e-21,2.80e-25,2.80e-45,6.90e-18,2.80e-46,3.50e-83,9.90e-21,5.00e-37,9.00e-60;CoverageSeq=0.628,0.687,0.952,0.482,0.496,0.421,0.771,0.829,0.728;CoverageHMM=0.584,0.701,0.957,0.667,0.461,0.966,0.949,0.789,0.708;Strand_Interference=1;Strand_Adaptation=NA
SEQF4544.1|QKZO01000011.1	CCTyper	CDS	34226	35950	575	+	.	ID=SEQF4544.1|QKZO01000011.1_17_cas;Genome_ID=SEQF4544.1;Feature_type=CDS;Product=Cas Prediction : Cas10_3_CAS-III;coding_strand=+;E-value=2.8e-25;Score=86.3;Coverage_Seq=0.6869565217391305;Coverage_Hmm=0.7005444646098004
SEQF4544.1|QKZO01000019.1	CCTyper	CDS	12003	12986	328	+	.	ID=SEQF4544.1|QKZO01000019.1_14_cas;Genome_ID=SEQF4544.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_IE;coding_strand=+;E-value=8e-108;Score=357.3;Coverage_Seq=0.8262195121951219;Coverage_Hmm=0.9925650557620818
SEQF4544.1|QKZO01000019.1	CCTyper	CDS	12983	13264	94	+	.	ID=SEQF4544.1|QKZO01000019.1_15_cas;Genome_ID=SEQF4544.1;Feature_type=CDS;Product=Cas Prediction : Cas2_10_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=3.7e-36;Score=120.8;Coverage_Seq=0.9148936170212766;Coverage_Hmm=1.0
SEQF4544.1|QKZO01000011.1	CCTyper	CDS	43794	44081	96	+	.	ID=SEQF4544.1|QKZO01000011.1_22_cas;Genome_ID=SEQF4544.1;Feature_type=CDS;Product=Cas Prediction : Cas2_2_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=9.9e-21;Score=71.4;Coverage_Seq=0.7708333333333334;Coverage_Hmm=0.9493670886075949
SEQF4544.1|QKZO01000019.1	CCTyper	CDS	4678	7182	835	+	.	ID=SEQF4544.1|QKZO01000019.1_8_cas;Genome_ID=SEQF4544.1;Feature_type=CDS;Product=Cas Prediction : Cas3_0_CAS-I;coding_strand=+;E-value=1.1e-57;Score=193.4;Coverage_Seq=0.4155688622754491;Coverage_Hmm=0.9065155807365439
SEQF4544.1|QKZO01000019.1	CCTyper	CDS	10655	11338	228	+	.	ID=SEQF4544.1|QKZO01000019.1_12_cas;Genome_ID=SEQF4544.1;Feature_type=CDS;Product=Cas Prediction : Cas5_0_CAS-I-E;coding_strand=+;E-value=1.3e-39;Score=133.6;Coverage_Seq=0.75;Coverage_Hmm=0.967032967032967
SEQF4544.1|QKZO01000011.1	CCTyper	CDS	32960	33829	290	-	.	ID=SEQF4544.1|QKZO01000011.1_16_cas;Genome_ID=SEQF4544.1;Feature_type=CDS;Product=Cas Prediction : Cas6_10_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=9.1e-21;Score=72.0;Coverage_Seq=0.6275862068965518;Coverage_Hmm=0.5838509316770186
SEQF4544.1|QKZO01000019.1	CCTyper	CDS	11335	12006	224	+	.	ID=SEQF4544.1|QKZO01000019.1_13_cas;Genome_ID=SEQF4544.1;Feature_type=CDS;Product=Cas Prediction : Cas6e_2_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1e-46;Score=157.5;Coverage_Seq=0.9732142857142857;Coverage_Hmm=1.0
SEQF4544.1|QKZO01000019.1	CCTyper	CDS	9570	10655	362	+	.	ID=SEQF4544.1|QKZO01000019.1_11_cas;Genome_ID=SEQF4544.1;Feature_type=CDS;Product=Cas Prediction : Cas7_1_CAS-I-E;coding_strand=+;E-value=5.7e-94;Score=313.1;Coverage_Seq=0.914364640883978;Coverage_Hmm=0.9192200557103064
SEQF4544.1|QKZO01000019.1	CCTyper	CDS	7613	9082	490	+	.	ID=SEQF4544.1|QKZO01000019.1_9_cas;Genome_ID=SEQF4544.1;Feature_type=CDS;Product=Cas Prediction : Cas8e_1_CAS-I-E;coding_strand=+;E-value=2.5e-86;Score=288.3;Coverage_Seq=0.8755102040816326;Coverage_Hmm=0.9957805907172996
SEQF4544.1|QKZO01000011.1	CCTyper	CDS	45271	46902	544	-	.	ID=SEQF4544.1|QKZO01000011.1_24_cas;Genome_ID=SEQF4544.1;Feature_type=CDS;Product=Cas Prediction : CorA_0_CAS-III-B-III-D;coding_strand=-;E-value=9e-60;Score=200.5;Coverage_Seq=0.7279411764705882;Coverage_Hmm=0.7078039927404719
SEQF4544.1|QKZO01000019.1	CCTyper	CDS	9079	9573	165	+	.	ID=SEQF4544.1|QKZO01000019.1_10_cas;Genome_ID=SEQF4544.1;Feature_type=CDS;Product=Cas Prediction : Cse2gr11_1_CAS-I-E;coding_strand=+;E-value=5.2e-19;Score=66.5;Coverage_Seq=0.7333333333333333;Coverage_Hmm=0.986013986013986
SEQF4544.1|QKZO01000011.1	CCTyper	CDS	37830	39404	525	+	.	ID=SEQF4544.1|QKZO01000011.1_19_cas;Genome_ID=SEQF4544.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_0_CAS-III-A-III-D;coding_strand=+;E-value=6.9e-18;Score=62.6;Coverage_Seq=0.4819047619047619;Coverage_Hmm=0.6666666666666666
SEQF4544.1|QKZO01000011.1	CCTyper	CDS	39401	41377	659	+	.	ID=SEQF4544.1|QKZO01000011.1_20_cas;Genome_ID=SEQF4544.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_4_CAS-III-A-III-D;coding_strand=+;E-value=2.8e-46;Score=156.3;Coverage_Seq=0.496206373292868;Coverage_Hmm=0.4609375
SEQF4544.1|QKZO01000011.1	CCTyper	CDS	35947	37830	628	+	.	ID=SEQF4544.1|QKZO01000011.1_18_cas;Genome_ID=SEQF4544.1;Feature_type=CDS;Product=Cas Prediction : Csm4gr5_0_CAS-III-D;coding_strand=+;E-value=2.8e-45;Score=152.3;Coverage_Seq=0.9522292993630573;Coverage_Hmm=0.9570552147239264
SEQF4544.1|QKZO01000011.1	CCTyper	CDS	44504	45274	257	-	.	ID=SEQF4544.1|QKZO01000011.1_23_cas;Genome_ID=SEQF4544.1;Feature_type=CDS;Product=Cas Prediction : DHH_CorA_0_CAS-III-B;coding_strand=-;E-value=5.0000000000000005e-37;Score=125.3;Coverage_Seq=0.8287937743190662;Coverage_Hmm=0.7888446215139442
SEQF4544.1|QKZO01000011.1	CCTyper	CDS	41773	43791	673	+	.	ID=SEQF4544.1|QKZO01000011.1_21_cas;Genome_ID=SEQF4544.1;Feature_type=CDS;Product=Cas Prediction : RT_0_CAS-III-AM-III-B;coding_strand=+;E-value=3.4999999999999996e-83;Score=276.5;Coverage_Seq=0.42050520059435365;Coverage_Hmm=0.9664429530201343
SEQF4544.1|QKZO01000019.1	CCTyper	CDS	4000	4623	208	+	.	ID=SEQF4544.1|QKZO01000019.1_7_cas;Genome_ID=SEQF4544.1;Feature_type=CDS;Product=Cas Prediction : WYL_0_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.6e-13;Score=48.5;Coverage_Seq=0.6586538461538461;Coverage_Hmm=0.41533546325878595
SEQF4544.1|QKZO01000019.1	CCTyper	CDS	2901	3884	328	-	.	ID=SEQF4544.1|QKZO01000019.1_6_cas;Genome_ID=SEQF4544.1;Feature_type=CDS;Product=Cas Prediction : WYL_3_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=9.300000000000001e-32;Score=108.1;Coverage_Seq=0.5670731707317073;Coverage_Hmm=0.9534883720930233