SEQF5016.1|JAHDTV010000003.1	CCTyper	repeat_region	189430	190130	701	+	.	ID=SEQF5016.1|JAHDTV010000003.1_1;Genome_ID=SEQF5016.1;Note=Predictor:CCtyper;Start:189430;End:190130;Consensus_Repeat:CGGCTCACCCCCGCGTAGGCGGGGAAGAC;Number_of_Repeats:12;Repeat_Length:29;Average_Spacer_Length:32.1;Repeat_Identity:97.5;Spacer_Identity:41.9;Spacer_Length_Sem:0.1;Trusted:True;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:I-E;Subtype_Probability:0.704;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5016.1|JAHDTV010000003.1	CCTyper	direct_repeat	189430	189458	29	+	.	ID=SEQF5016.1|JAHDTV010000003.1_1_REPEAT1;Parent=SEQF5016.1|JAHDTV010000003.1_1;Note=CGGCTCACCCCCGCGTAGGCGGGGAAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5016.1|JAHDTV010000003.1	CCTyper	binding_site	189459	189490	32	+	.	ID=SEQF5016.1|JAHDTV010000003.1_1_SPACER1;Parent=SEQF5016.1|JAHDTV010000003.1_1;Note=GACAAGAGCATCTCCACCGGACGCAACCGCCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5016.1|JAHDTV010000003.1	CCTyper	direct_repeat	189491	189519	29	+	.	ID=SEQF5016.1|JAHDTV010000003.1_1_REPEAT2;Parent=SEQF5016.1|JAHDTV010000003.1_1;Note=CGGCTCACCCCCGCGTAGGCGGGGAAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5016.1|JAHDTV010000003.1	CCTyper	binding_site	189520	189551	32	+	.	ID=SEQF5016.1|JAHDTV010000003.1_1_SPACER2;Parent=SEQF5016.1|JAHDTV010000003.1_1;Note=ATCGATGCACCGCTACATAGGCATCGATCTAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5016.1|JAHDTV010000003.1	CCTyper	direct_repeat	189552	189580	29	+	.	ID=SEQF5016.1|JAHDTV010000003.1_1_REPEAT3;Parent=SEQF5016.1|JAHDTV010000003.1_1;Note=CGGCTCACCCCCGCGTAGGCGGGGAAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5016.1|JAHDTV010000003.1	CCTyper	binding_site	189581	189612	32	+	.	ID=SEQF5016.1|JAHDTV010000003.1_1_SPACER3;Parent=SEQF5016.1|JAHDTV010000003.1_1;Note=TGAAACACGTTCAACATTATCTGGCAAACGCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5016.1|JAHDTV010000003.1	CCTyper	direct_repeat	189613	189641	29	+	.	ID=SEQF5016.1|JAHDTV010000003.1_1_REPEAT4;Parent=SEQF5016.1|JAHDTV010000003.1_1;Note=CGGCTCACCCCCGCGTAGGCGGGGAAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5016.1|JAHDTV010000003.1	CCTyper	binding_site	189642	189673	32	+	.	ID=SEQF5016.1|JAHDTV010000003.1_1_SPACER4;Parent=SEQF5016.1|JAHDTV010000003.1_1;Note=GGACGCGGCGGAGGGGATGACAGCCCAAGCGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5016.1|JAHDTV010000003.1	CCTyper	direct_repeat	189674	189702	29	+	.	ID=SEQF5016.1|JAHDTV010000003.1_1_REPEAT5;Parent=SEQF5016.1|JAHDTV010000003.1_1;Note=CGGCTCACCCCCGCGTAGGCGGGGAAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5016.1|JAHDTV010000003.1	CCTyper	binding_site	189703	189734	32	+	.	ID=SEQF5016.1|JAHDTV010000003.1_1_SPACER5;Parent=SEQF5016.1|JAHDTV010000003.1_1;Note=GAGCCGGACGCAGGGGTAAACCACTTGTGTAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5016.1|JAHDTV010000003.1	CCTyper	direct_repeat	189735	189763	29	+	.	ID=SEQF5016.1|JAHDTV010000003.1_1_REPEAT6;Parent=SEQF5016.1|JAHDTV010000003.1_1;Note=CGGCTCACCCCCGCGTAGGCGGGGAAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5016.1|JAHDTV010000003.1	CCTyper	binding_site	189764	189795	32	+	.	ID=SEQF5016.1|JAHDTV010000003.1_1_SPACER6;Parent=SEQF5016.1|JAHDTV010000003.1_1;Note=CGCGGATGATCTCCAGAACGTCGTCGCGGTTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5016.1|JAHDTV010000003.1	CCTyper	direct_repeat	189796	189824	29	+	.	ID=SEQF5016.1|JAHDTV010000003.1_1_REPEAT7;Parent=SEQF5016.1|JAHDTV010000003.1_1;Note=AGGCTCACCCCCGCGTAGGCGGGGAAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5016.1|JAHDTV010000003.1	CCTyper	binding_site	189825	189857	33	+	.	ID=SEQF5016.1|JAHDTV010000003.1_1_SPACER7;Parent=SEQF5016.1|JAHDTV010000003.1_1;Note=CTCCTAGGCAGCAGGGAGAGCGTCTGAGGGGCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5016.1|JAHDTV010000003.1	CCTyper	direct_repeat	189858	189886	29	+	.	ID=SEQF5016.1|JAHDTV010000003.1_1_REPEAT8;Parent=SEQF5016.1|JAHDTV010000003.1_1;Note=TGGCTCACCCCCGCGTAGGCGGGGAAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5016.1|JAHDTV010000003.1	CCTyper	binding_site	189887	189918	32	+	.	ID=SEQF5016.1|JAHDTV010000003.1_1_SPACER8;Parent=SEQF5016.1|JAHDTV010000003.1_1;Note=GTCAGAGCCGATGCGTACAAGAAACGCGTTTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5016.1|JAHDTV010000003.1	CCTyper	direct_repeat	189919	189947	29	+	.	ID=SEQF5016.1|JAHDTV010000003.1_1_REPEAT9;Parent=SEQF5016.1|JAHDTV010000003.1_1;Note=CGGCTCACCCCCGCGTAGGCGGGGAAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5016.1|JAHDTV010000003.1	CCTyper	binding_site	189948	189979	32	+	.	ID=SEQF5016.1|JAHDTV010000003.1_1_SPACER9;Parent=SEQF5016.1|JAHDTV010000003.1_1;Note=AGCTCATTGAGGCCCGTGAGAAATTGAAGGTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5016.1|JAHDTV010000003.1	CCTyper	direct_repeat	189980	190008	29	+	.	ID=SEQF5016.1|JAHDTV010000003.1_1_REPEAT10;Parent=SEQF5016.1|JAHDTV010000003.1_1;Note=CGGCTCACCCCCGCGTAGGCGGGGAAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5016.1|JAHDTV010000003.1	CCTyper	binding_site	190009	190040	32	+	.	ID=SEQF5016.1|JAHDTV010000003.1_1_SPACER10;Parent=SEQF5016.1|JAHDTV010000003.1_1;Note=CAGAGAAGGCCCTCAAAAAGTACACTGAGAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5016.1|JAHDTV010000003.1	CCTyper	direct_repeat	190041	190069	29	+	.	ID=SEQF5016.1|JAHDTV010000003.1_1_REPEAT11;Parent=SEQF5016.1|JAHDTV010000003.1_1;Note=CGGCTCACCCCCGCGTAGGCGGGGAAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5016.1|JAHDTV010000003.1	CCTyper	binding_site	190070	190101	32	+	.	ID=SEQF5016.1|JAHDTV010000003.1_1_SPACER11;Parent=SEQF5016.1|JAHDTV010000003.1_1;Note=TTGAATGCCGAGGCGGACCATGTCGGCGAGTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5016.1|JAHDTV010000003.1	CCTyper	direct_repeat	190102	190130	29	+	.	ID=SEQF5016.1|JAHDTV010000003.1_1_REPEAT12;Parent=SEQF5016.1|JAHDTV010000003.1_1;Note=CGGCTCACCCCCGCGTAGGCGGGGAAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5016.1|JAHDTV010000003.1	CCTyper	OPERON	190532	199040	8509	-	.	ID=SEQF5016.1|JAHDTV010000003.1@4;Genome_ID=SEQF5016.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type I-E;Complete_Interference=100%;Complete_Adaptation=50%;Best_type=I-E;Best_score=24.0;Genes=Cas1_0_IE,Cas6e_2_CAS-I-II-III-IV-V-VI,Cas5_1_CAS-I-E,Cas7_1_CAS-I-E,Cse2gr11_7_CAS-I-E,Cas8e_4_CAS-I-E,Cas3_0_CAS-I;Positions=171,172,173,174,175,176,177;E-values=4.40e-104,9.20e-49,2.30e-50,4.00e-117,9.60e-29,1.00e-115,2.70e-62;CoverageSeq=0.853,0.977,0.691,0.944,0.733,0.857,0.445;CoverageHMM=0.993,1.0,0.994,0.994,0.993,0.996,0.997;Strand_Interference=-1;Strand_Adaptation=-1
SEQF5016.1|JAHDTV010000003.1	CCTyper	CDS	190532	191470	313	-	.	ID=SEQF5016.1|JAHDTV010000003.1_171_cas;Genome_ID=SEQF5016.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_IE;coding_strand=-;E-value=4.4e-104;Score=344.5;Coverage_Seq=0.853035143769968;Coverage_Hmm=0.9925650557620818
SEQF5016.1|JAHDTV010000003.1	CCTyper	CDS	196248	199040	931	-	.	ID=SEQF5016.1|JAHDTV010000003.1_177_cas;Genome_ID=SEQF5016.1;Feature_type=CDS;Product=Cas Prediction : Cas3_0_CAS-I;coding_strand=-;E-value=2.6999999999999998e-62;Score=207.9;Coverage_Seq=0.4446831364124597;Coverage_Hmm=0.9971671388101983
SEQF5016.1|JAHDTV010000003.1	CCTyper	CDS	192139	192846	236	-	.	ID=SEQF5016.1|JAHDTV010000003.1_173_cas;Genome_ID=SEQF5016.1;Feature_type=CDS;Product=Cas Prediction : Cas5_1_CAS-I-E;coding_strand=-;E-value=2.3e-50;Score=168.0;Coverage_Seq=0.690677966101695;Coverage_Hmm=0.9944444444444445
SEQF5016.1|JAHDTV010000003.1	CCTyper	CDS	191474	192139	222	-	.	ID=SEQF5016.1|JAHDTV010000003.1_172_cas;Genome_ID=SEQF5016.1;Feature_type=CDS;Product=Cas Prediction : Cas6e_2_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=9.2e-49;Score=163.5;Coverage_Seq=0.9774774774774775;Coverage_Hmm=1.0
SEQF5016.1|JAHDTV010000003.1	CCTyper	CDS	192843	193967	375	-	.	ID=SEQF5016.1|JAHDTV010000003.1_174_cas;Genome_ID=SEQF5016.1;Feature_type=CDS;Product=Cas Prediction : Cas7_1_CAS-I-E;coding_strand=-;E-value=4e-117;Score=388.7;Coverage_Seq=0.944;Coverage_Hmm=0.9944289693593314
SEQF5016.1|JAHDTV010000003.1	CCTyper	CDS	194593	196251	553	-	.	ID=SEQF5016.1|JAHDTV010000003.1_176_cas;Genome_ID=SEQF5016.1;Feature_type=CDS;Product=Cas Prediction : Cas8e_4_CAS-I-E;coding_strand=-;E-value=9.999999999999999e-116;Score=384.4;Coverage_Seq=0.8571428571428571;Coverage_Hmm=0.9956989247311828
SEQF5016.1|JAHDTV010000003.1	CCTyper	CDS	193964	194593	210	-	.	ID=SEQF5016.1|JAHDTV010000003.1_175_cas;Genome_ID=SEQF5016.1;Feature_type=CDS;Product=Cas Prediction : Cse2gr11_7_CAS-I-E;coding_strand=-;E-value=9.6e-29;Score=97.7;Coverage_Seq=0.7333333333333333;Coverage_Hmm=0.9930555555555556