SEQF5158.1|MSLA01000008.1	CCTyper	repeat_region	67	968	902	+	.	ID=SEQF5158.1|MSLA01000008.1_1;Genome_ID=SEQF5158.1;Note=Predictor:CCtyper;Start:67;End:968;Consensus_Repeat:ACCTTCTGGTGCTGGGTGCTTTCTG;Number_of_Repeats:13;Repeat_Length:25.0;Average_Spacer_Length:48.1;Repeat_Identity:88.8;Spacer_Identity:51.4;Spacer_Length_Sem:0.4;Trusted:True;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:III-D;Subtype_Probability:0.27;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	direct_repeat	67	91	25	+	.	ID=SEQF5158.1|MSLA01000008.1_1_REPEAT1;Parent=SEQF5158.1|MSLA01000008.1_1;Note=ACCTTCTGGTGCTGGGTGCTTTCTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	binding_site	92	137	46	+	.	ID=SEQF5158.1|MSLA01000008.1_1_SPACER1;Parent=SEQF5158.1|MSLA01000008.1_1;Note=ACATGAGGTCTTTGAGTCGATCCGGAATGTCTTGCCGTCTTAATGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	direct_repeat	138	162	25	+	.	ID=SEQF5158.1|MSLA01000008.1_1_REPEAT2;Parent=SEQF5158.1|MSLA01000008.1_1;Note=ACCTTGTGGTGCTGGGTGCTTTCTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	binding_site	163	211	49	+	.	ID=SEQF5158.1|MSLA01000008.1_1_SPACER2;Parent=SEQF5158.1|MSLA01000008.1_1;Note=GCCTGGCTCGTGATGTATGTTGCATGGCTCCTTTTTGGAGTCTTAATGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	direct_repeat	212	236	25	+	.	ID=SEQF5158.1|MSLA01000008.1_1_REPEAT3;Parent=SEQF5158.1|MSLA01000008.1_1;Note=ACCTTCTGGTGCTGGGTGCTTCCTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	binding_site	237	286	50	+	.	ID=SEQF5158.1|MSLA01000008.1_1_SPACER3;Parent=SEQF5158.1|MSLA01000008.1_1;Note=GCTCGCAACACACACTGTAGCAGTATGTGTTGATGAATTCGTCTTAATGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	direct_repeat	287	311	25	+	.	ID=SEQF5158.1|MSLA01000008.1_1_REPEAT4;Parent=SEQF5158.1|MSLA01000008.1_1;Note=ACTTTCTGGTGCTGGGTGCTTTCTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	binding_site	312	359	48	+	.	ID=SEQF5158.1|MSLA01000008.1_1_SPACER4;Parent=SEQF5158.1|MSLA01000008.1_1;Note=ACCAAAGGAGAACAGCCATGAGCGCACCCCCTGGATCTGTCTTAATGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	direct_repeat	360	384	25	+	.	ID=SEQF5158.1|MSLA01000008.1_1_REPEAT5;Parent=SEQF5158.1|MSLA01000008.1_1;Note=ACCTTCTGGTGCTGGGTGCTTTCTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	binding_site	385	432	48	+	.	ID=SEQF5158.1|MSLA01000008.1_1_SPACER5;Parent=SEQF5158.1|MSLA01000008.1_1;Note=ACCACAGAGAAACAGGAGACAACAAACATGGCCGGAGAGTCTTAATGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	direct_repeat	433	457	25	+	.	ID=SEQF5158.1|MSLA01000008.1_1_REPEAT6;Parent=SEQF5158.1|MSLA01000008.1_1;Note=ACCTTCTGGTGCTGGGTGCTTTCTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	binding_site	458	506	49	+	.	ID=SEQF5158.1|MSLA01000008.1_1_SPACER6;Parent=SEQF5158.1|MSLA01000008.1_1;Note=ACCTAAGTGGATACAGAAGTTTGCCGTCCTATATGGTCCGTCTTAATGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	direct_repeat	507	531	25	+	.	ID=SEQF5158.1|MSLA01000008.1_1_REPEAT7;Parent=SEQF5158.1|MSLA01000008.1_1;Note=ACCTTGTGGCGCTGGGTGCTTTCTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	binding_site	532	578	47	+	.	ID=SEQF5158.1|MSLA01000008.1_1_SPACER7;Parent=SEQF5158.1|MSLA01000008.1_1;Note=ACGGCCAGCAGCAGGGCGGGAACTTCGGAGGCAACTTGTCTTAATGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	direct_repeat	579	603	25	+	.	ID=SEQF5158.1|MSLA01000008.1_1_REPEAT8;Parent=SEQF5158.1|MSLA01000008.1_1;Note=ACCTTGTGGTGCTGGGTGCTTTCTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	binding_site	604	652	49	+	.	ID=SEQF5158.1|MSLA01000008.1_1_SPACER8;Parent=SEQF5158.1|MSLA01000008.1_1;Note=ACAAGACCGCCGGCGCCCTGGAAACCACTGTCACCGTCAGTCTTAATGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	direct_repeat	653	677	25	+	.	ID=SEQF5158.1|MSLA01000008.1_1_REPEAT9;Parent=SEQF5158.1|MSLA01000008.1_1;Note=ACCTTTTGGTGCTGGGTGCTTTCTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	binding_site	678	724	47	+	.	ID=SEQF5158.1|MSLA01000008.1_1_SPACER9;Parent=SEQF5158.1|MSLA01000008.1_1;Note=ACTGATCGAGGGGCTCCAGGTCCCCACGCGACTGAGTGTCTTAATGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	direct_repeat	725	749	25	+	.	ID=SEQF5158.1|MSLA01000008.1_1_REPEAT10;Parent=SEQF5158.1|MSLA01000008.1_1;Note=GCCTTCTGGCGCTGGGTGCTTTCCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	binding_site	750	795	46	+	.	ID=SEQF5158.1|MSLA01000008.1_1_SPACER10;Parent=SEQF5158.1|MSLA01000008.1_1;Note=ACCAATCACGAAGCACCTCTCCCTCTCTGACGAGGAGTCTTAATGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	direct_repeat	796	820	25	+	.	ID=SEQF5158.1|MSLA01000008.1_1_REPEAT11;Parent=SEQF5158.1|MSLA01000008.1_1;Note=ACCTTGTGGTGCTGGGTGCTTTCTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	binding_site	821	869	49	+	.	ID=SEQF5158.1|MSLA01000008.1_1_SPACER11;Parent=SEQF5158.1|MSLA01000008.1_1;Note=GCACGAGATGGTTGCCTGGCTGAACGATCCCTGGAACTGGTCTTAATGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	direct_repeat	870	894	25	+	.	ID=SEQF5158.1|MSLA01000008.1_1_REPEAT12;Parent=SEQF5158.1|MSLA01000008.1_1;Note=ACCTTCTGGTGCTGGGTGCTTTCTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	binding_site	895	943	49	+	.	ID=SEQF5158.1|MSLA01000008.1_1_SPACER12;Parent=SEQF5158.1|MSLA01000008.1_1;Note=ACTTTACGACTATGGCTCAACTGGGCAGGTCATCAGTGAGTCTTAATGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	direct_repeat	944	968	25	+	.	ID=SEQF5158.1|MSLA01000008.1_1_REPEAT13;Parent=SEQF5158.1|MSLA01000008.1_1;Note=ACCTTCTGGTGCTGGGTGCTTTCTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	repeat_region	1929	2315	387	+	.	ID=SEQF5158.1|MSLA01000008.1_2;Genome_ID=SEQF5158.1;Note=Predictor:CCtyper;Start:1929;End:2315;Consensus_Repeat:CTAGTGGTGCTGGGTGCTTTCTGAC;Number_of_Repeats:6;Repeat_Length:25.0;Average_Spacer_Length:47.4;Repeat_Identity:87.6;Spacer_Identity:48.9;Spacer_Length_Sem:0.7;Trusted:True;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:III-B;Subtype_Probability:0.204;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	direct_repeat	1929	1953	25	+	.	ID=SEQF5158.1|MSLA01000008.1_2_REPEAT1;Parent=SEQF5158.1|MSLA01000008.1_2;Note=CTTGTGGTGCTGGGTGTTTTCTGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	binding_site	1954	2001	48	+	.	ID=SEQF5158.1|MSLA01000008.1_2_SPACER1;Parent=SEQF5158.1|MSLA01000008.1_2;Note=GCAGAGGCTTCGTATCTCTTCTTGAGTACACCAGACATCTTAATGCAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	direct_repeat	2002	2026	25	+	.	ID=SEQF5158.1|MSLA01000008.1_2_REPEAT2;Parent=SEQF5158.1|MSLA01000008.1_2;Note=CTTGTGGTGCTGGGTGCTTTCTGAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	binding_site	2027	2076	50	+	.	ID=SEQF5158.1|MSLA01000008.1_2_SPACER2;Parent=SEQF5158.1|MSLA01000008.1_2;Note=CTCCCCTCGCCTGAGGAGTATCGACGTCGTGCCTTTGAGTCTTAATGCAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	direct_repeat	2077	2101	25	+	.	ID=SEQF5158.1|MSLA01000008.1_2_REPEAT3;Parent=SEQF5158.1|MSLA01000008.1_2;Note=CTTCTGGTGCTGGGTGCTTTCTGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	binding_site	2102	2147	46	+	.	ID=SEQF5158.1|MSLA01000008.1_2_SPACER3;Parent=SEQF5158.1|MSLA01000008.1_2;Note=GATCCCTTTGGGTTGAGGGTGTCACACGAGAGGAGTCTTAATACAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	direct_repeat	2148	2172	25	+	.	ID=SEQF5158.1|MSLA01000008.1_2_REPEAT4;Parent=SEQF5158.1|MSLA01000008.1_2;Note=CTAGTGGTGCTGGGTGCTTTCTGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	binding_site	2173	2218	46	+	.	ID=SEQF5158.1|MSLA01000008.1_2_SPACER4;Parent=SEQF5158.1|MSLA01000008.1_2;Note=GTGGGAGATGCTGAACGAAATCATTAAGGGGACTGTCTTAATGCAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	direct_repeat	2219	2243	25	+	.	ID=SEQF5158.1|MSLA01000008.1_2_REPEAT5;Parent=SEQF5158.1|MSLA01000008.1_2;Note=CTTGTGGTGCTGGGTGCTTTCTGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	binding_site	2244	2290	47	+	.	ID=SEQF5158.1|MSLA01000008.1_2_SPACER5;Parent=SEQF5158.1|MSLA01000008.1_2;Note=TGGATGACCAGGCTACGAGGAACGCCGACGCGGAAGTCTCAATGCAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	direct_repeat	2291	2315	25	+	.	ID=SEQF5158.1|MSLA01000008.1_2_REPEAT6;Parent=SEQF5158.1|MSLA01000008.1_2;Note=CTTGTGGTGCTGAGTGCTTTCTGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	repeat_region	258005	258757	753	+	.	ID=SEQF5158.1|MSLA01000015.1_3;Genome_ID=SEQF5158.1;Note=Predictor:CCtyper;Start:258005;End:258757;Consensus_Repeat:GTCTTAATGCACCTTCTGGTGCT;Number_of_Repeats:11;Repeat_Length:23.0;Average_Spacer_Length:50.0;Repeat_Identity:100.0;Spacer_Identity:54.6;Spacer_Length_Sem:0.4;Trusted:True;Cas_Type_Prediction: III-D;Cas_Subtype_Prediction:III-D;Subtype_Probability:0.938;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	direct_repeat	258005	258027	23	+	.	ID=SEQF5158.1|MSLA01000015.1_3_REPEAT1;Parent=SEQF5158.1|MSLA01000015.1_3;Note=GTCTTAATGCACCTTCTGGTGCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	binding_site	258028	258076	49	+	.	ID=SEQF5158.1|MSLA01000015.1_3_SPACER1;Parent=SEQF5158.1|MSLA01000015.1_3;Note=AGGTGCCTTCTGACGCGGAATGCCGACGCGGAAGCGCGTCGGACCGAGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	direct_repeat	258077	258099	23	+	.	ID=SEQF5158.1|MSLA01000015.1_3_REPEAT2;Parent=SEQF5158.1|MSLA01000015.1_3;Note=GTCTTAATGCACCTTCTGGTGCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	binding_site	258100	258150	51	+	.	ID=SEQF5158.1|MSLA01000015.1_3_SPACER2;Parent=SEQF5158.1|MSLA01000015.1_3;Note=AGGTGCCTTCTGACCGATGACGAGACCCGTGATAAGATCCGGGAGGCTAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	direct_repeat	258151	258173	23	+	.	ID=SEQF5158.1|MSLA01000015.1_3_REPEAT3;Parent=SEQF5158.1|MSLA01000015.1_3;Note=GTCTTAATGCACCTTCTGGTGCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	binding_site	258174	258221	48	+	.	ID=SEQF5158.1|MSLA01000015.1_3_SPACER3;Parent=SEQF5158.1|MSLA01000015.1_3;Note=AGGTGCCTTCTGACCTGAGGCTGTTCTTGAGGAGATTGCCAAGGTTGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	direct_repeat	258222	258244	23	+	.	ID=SEQF5158.1|MSLA01000015.1_3_REPEAT4;Parent=SEQF5158.1|MSLA01000015.1_3;Note=GTCTTAATGCACCTTCTGGTGCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	binding_site	258245	258294	50	+	.	ID=SEQF5158.1|MSLA01000015.1_3_SPACER4;Parent=SEQF5158.1|MSLA01000015.1_3;Note=GGGTGCTTTCTGACGATATCAGAAGATGGCGCAAGAAGCGTCACAGTCAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	direct_repeat	258295	258317	23	+	.	ID=SEQF5158.1|MSLA01000015.1_3_REPEAT5;Parent=SEQF5158.1|MSLA01000015.1_3;Note=GTCTTAATGCACCTTCTGGTGCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	binding_site	258318	258367	50	+	.	ID=SEQF5158.1|MSLA01000015.1_3_SPACER5;Parent=SEQF5158.1|MSLA01000015.1_3;Note=GGGTGCTTTCTGACCAAGACACGGGTCATCCTCATGGAGTCCGACATCGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	direct_repeat	258368	258390	23	+	.	ID=SEQF5158.1|MSLA01000015.1_3_REPEAT6;Parent=SEQF5158.1|MSLA01000015.1_3;Note=GTCTTAATGCACCTTCTGGTGCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	binding_site	258391	258438	48	+	.	ID=SEQF5158.1|MSLA01000015.1_3_SPACER6;Parent=SEQF5158.1|MSLA01000015.1_3;Note=GGGTGCTTTCTGACGTCATCCCAGTCACGGCGATAATCTCCATGTTTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	direct_repeat	258439	258461	23	+	.	ID=SEQF5158.1|MSLA01000015.1_3_REPEAT7;Parent=SEQF5158.1|MSLA01000015.1_3;Note=GTCTTAATGCACCTTCTGGTGCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	binding_site	258462	258511	50	+	.	ID=SEQF5158.1|MSLA01000015.1_3_SPACER7;Parent=SEQF5158.1|MSLA01000015.1_3;Note=GGGTGCTTTCTGACGCTCCTGGCAAGATCATCCTCGTTGGGGACGACAAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	direct_repeat	258512	258534	23	+	.	ID=SEQF5158.1|MSLA01000015.1_3_REPEAT8;Parent=SEQF5158.1|MSLA01000015.1_3;Note=GTCTTAATGCACCTTCTGGTGCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	binding_site	258535	258584	50	+	.	ID=SEQF5158.1|MSLA01000015.1_3_SPACER8;Parent=SEQF5158.1|MSLA01000015.1_3;Note=GGGTGCTTTCTGACGACGTGTCGGACGACGCCTCCATAACGTCTGGACTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	direct_repeat	258585	258607	23	+	.	ID=SEQF5158.1|MSLA01000015.1_3_REPEAT9;Parent=SEQF5158.1|MSLA01000015.1_3;Note=GTCTTAATGCACCTTCTGGTGCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	binding_site	258608	258659	52	+	.	ID=SEQF5158.1|MSLA01000015.1_3_SPACER9;Parent=SEQF5158.1|MSLA01000015.1_3;Note=GGGTGCTTTCTGACATGTAGTAGCGCTGTGCTACTACGAGACAGGGGCTCAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	direct_repeat	258660	258682	23	+	.	ID=SEQF5158.1|MSLA01000015.1_3_REPEAT10;Parent=SEQF5158.1|MSLA01000015.1_3;Note=GTCTTAATGCACCTTCTGGTGCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	binding_site	258683	258734	52	+	.	ID=SEQF5158.1|MSLA01000015.1_3_SPACER10;Parent=SEQF5158.1|MSLA01000015.1_3;Note=GGGTGCTTTCTGACTGAGTTTTGAGGAGCAAGCAGAATACCTGAACGATGTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	direct_repeat	258735	258757	23	+	.	ID=SEQF5158.1|MSLA01000015.1_3_REPEAT11;Parent=SEQF5158.1|MSLA01000015.1_3;Note=GTCTTAATGCACCTTCTGGTGCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	repeat_region	275499	275744	246	+	.	ID=SEQF5158.1|MSLA01000015.1_4;Genome_ID=SEQF5158.1;Note=Predictor:CCtyper;Start:275499;End:275744;Consensus_Repeat:TTAATGCACCTTGTGGTGCTGGGTGCT;Number_of_Repeats:4;Repeat_Length:27.0;Average_Spacer_Length:46.0;Repeat_Identity:86.5;Spacer_Identity:52.7;Spacer_Length_Sem:0.6;Trusted:True;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:III-D;Subtype_Probability:0.343;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	direct_repeat	275499	275525	27	+	.	ID=SEQF5158.1|MSLA01000015.1_4_REPEAT1;Parent=SEQF5158.1|MSLA01000015.1_4;Note=TTAATGCATCTTTTGGTGCTGGGTGCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	binding_site	275526	275572	47	+	.	ID=SEQF5158.1|MSLA01000015.1_4_SPACER1;Parent=SEQF5158.1|MSLA01000015.1_4;Note=TTCTGGCTGGAGGGCAAGATCGACGATGACGACCTCGCCTGTACGTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	direct_repeat	275573	275599	27	+	.	ID=SEQF5158.1|MSLA01000015.1_4_REPEAT2;Parent=SEQF5158.1|MSLA01000015.1_4;Note=TTAATGCACCTTGTGGTGCTGGGTGCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	binding_site	275600	275645	46	+	.	ID=SEQF5158.1|MSLA01000015.1_4_SPACER2;Parent=SEQF5158.1|MSLA01000015.1_4;Note=GTCTGACCTCACAATGTAGATGGCCCAGCTTGTATCAATGCTCGTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	direct_repeat	275646	275672	27	+	.	ID=SEQF5158.1|MSLA01000015.1_4_REPEAT3;Parent=SEQF5158.1|MSLA01000015.1_4;Note=TTAATGCACCTTGTGGTGCTGGGTGCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	binding_site	275673	275717	45	+	.	ID=SEQF5158.1|MSLA01000015.1_4_SPACER3;Parent=SEQF5158.1|MSLA01000015.1_4;Note=GTCTGACCGTCACAGCTCAGTCCGCCGCCCATCAGGATGACGTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	direct_repeat	275718	275744	27	+	.	ID=SEQF5158.1|MSLA01000015.1_4_REPEAT4;Parent=SEQF5158.1|MSLA01000015.1_4;Note=TAATGCACCTTAGTAGTGCTGGGTGCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	repeat_region	274805	275127	323	+	.	ID=SEQF5158.1|MSLA01000015.1-4_6;Genome_ID=SEQF5158.1;Note=Predictor:CCtyper;Start:274805;End:275127;Consensus_Repeat:GTCTTAATGCACCTTGTGGTGCTGGGCGCTTTCTGAC;Number_of_Repeats:5;Repeat_Length:36.6;Average_Spacer_Length:35.0;Repeat_Identity:87.2;Spacer_Identity:40.2;Spacer_Length_Sem:1.4;Trusted:True;Cas_Type_Prediction: III-D;Cas_Subtype_Prediction:III-D;Subtype_Probability:0.996;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	direct_repeat	274805	274839	35	+	.	ID=SEQF5158.1|MSLA01000015.1-4_6_REPEAT1;Parent=SEQF5158.1|MSLA01000015.1-4_6;Note=CTTAATGCACCTTGTGGTGCTGGGTGCTTTCTGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	binding_site	274840	274870	31	+	.	ID=SEQF5158.1|MSLA01000015.1-4_6_SPACER1;Parent=SEQF5158.1|MSLA01000015.1-4_6;Note=CTGGGAGATTAGTAGAGCGGGCGGCAAAACT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	direct_repeat	274871	274907	37	+	.	ID=SEQF5158.1|MSLA01000015.1-4_6_REPEAT2;Parent=SEQF5158.1|MSLA01000015.1-4_6;Note=GTCTTAATGCACCTTGTGGTGCTGGGCGCTTTCTGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	binding_site	274908	274944	37	+	.	ID=SEQF5158.1|MSLA01000015.1-4_6_SPACER2;Parent=SEQF5158.1|MSLA01000015.1-4_6;Note=CCAGAAATGGATGAGCAGGGTCATCGACTCCTACGGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	direct_repeat	274945	274981	37	+	.	ID=SEQF5158.1|MSLA01000015.1-4_6_REPEAT3;Parent=SEQF5158.1|MSLA01000015.1-4_6;Note=TCTTAATGCACCTTCTGGTGCTGGGTGCTTTCTGACT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	binding_site	274982	275017	36	+	.	ID=SEQF5158.1|MSLA01000015.1-4_6_SPACER3;Parent=SEQF5158.1|MSLA01000015.1-4_6;Note=ATATATCTAGTAAGAGGTAAGCTACCGACCGATAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	direct_repeat	275018	275054	37	+	.	ID=SEQF5158.1|MSLA01000015.1-4_6_REPEAT4;Parent=SEQF5158.1|MSLA01000015.1-4_6;Note=GTCTTAATTCACCTTCTGGTGCTGGGTGCTTTCTGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	binding_site	275055	275090	36	+	.	ID=SEQF5158.1|MSLA01000015.1-4_6_SPACER4;Parent=SEQF5158.1|MSLA01000015.1-4_6;Note=GCCCTACTCCCGGGGGTCGCCATCGGGTATGTGATG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	direct_repeat	275091	275127	37	+	.	ID=SEQF5158.1|MSLA01000015.1-4_6_REPEAT5;Parent=SEQF5158.1|MSLA01000015.1-4_6;Note=GTCTTAATGCACCTTCTGGTGCTGGATGCTTTCTGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	repeat_region	276232	276416	185	+	.	ID=SEQF5158.1|MSLA01000015.1-4_8;Genome_ID=SEQF5158.1;Note=Predictor:CCtyper;Start:276232;End:276416;Consensus_Repeat:GTCTTAATGCACCTCGTGGTGCTGGGTGCTTTCTGAC;Number_of_Repeats:3;Repeat_Length:36.0;Average_Spacer_Length:38.5;Repeat_Identity:87.8;Spacer_Identity:48.1;Spacer_Length_Sem:0.5;Trusted:True;Cas_Type_Prediction: III-D;Cas_Subtype_Prediction:III-D;Subtype_Probability:0.924;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	direct_repeat	276232	276268	37	+	.	ID=SEQF5158.1|MSLA01000015.1-4_8_REPEAT1;Parent=SEQF5158.1|MSLA01000015.1-4_8;Note=GTCTTAATGCGCCTTGTGGTGCTGGGTGCTTTCTGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	binding_site	276269	276307	39	+	.	ID=SEQF5158.1|MSLA01000015.1-4_8_SPACER1;Parent=SEQF5158.1|MSLA01000015.1-4_8;Note=GTGCTAGTTCGAACGGCTGACATCGTGTGGATTGAAGTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	direct_repeat	276308	276341	34	+	.	ID=SEQF5158.1|MSLA01000015.1-4_8_REPEAT2;Parent=SEQF5158.1|MSLA01000015.1-4_8;Note=TTAATGCACCTTGTGGTGCTGGGTGCTTTCTGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	binding_site	276342	276379	38	+	.	ID=SEQF5158.1|MSLA01000015.1-4_8_SPACER2;Parent=SEQF5158.1|MSLA01000015.1-4_8;Note=GGAGCAACCGTGACCGTGACCGGGATCCGCGTGGTCCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	direct_repeat	276380	276416	37	+	.	ID=SEQF5158.1|MSLA01000015.1-4_8_REPEAT3;Parent=SEQF5158.1|MSLA01000015.1-4_8;Note=GTCTTAATGCACCTCGTGGTGCTGGGTGCTTTCTGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	repeat_region	1316	1555	240	+	.	ID=SEQF5158.1|MSLA01000008.1-1_10;Genome_ID=SEQF5158.1;Note=Predictor:CCtyper;Start:1316;End:1555;Consensus_Repeat:TTCTGGTCCTGGGTGCTTTCTGAC;Number_of_Repeats:4;Repeat_Length:33.2;Average_Spacer_Length:35.7;Repeat_Identity:71.9;Spacer_Identity:42.7;Spacer_Length_Sem:0.9;Trusted:True;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:III-B;Subtype_Probability:0.26;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	direct_repeat	1316	1339	24	+	.	ID=SEQF5158.1|MSLA01000008.1-1_10_REPEAT1;Parent=SEQF5158.1|MSLA01000008.1-1_10;Note=TTCTGGTCCTGGGTGCTTTCTGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	binding_site	1340	1373	34	+	.	ID=SEQF5158.1|MSLA01000008.1-1_10_SPACER1;Parent=SEQF5158.1|MSLA01000008.1-1_10;Note=AATCGGCGCTACGGTAGGTGCTGCTTATACCACC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	direct_repeat	1374	1410	37	+	.	ID=SEQF5158.1|MSLA01000008.1-1_10_REPEAT2;Parent=SEQF5158.1|MSLA01000008.1-1_10;Note=GTCTTAATTCGCCTTGTGGTGCTGGGTGCTTTCTGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	binding_site	1411	1446	36	+	.	ID=SEQF5158.1|MSLA01000008.1-1_10_SPACER2;Parent=SEQF5158.1|MSLA01000008.1-1_10;Note=CAGGTGGAGGACGCTCTTGTAGGGAAGACTATTGAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	direct_repeat	1447	1483	37	+	.	ID=SEQF5158.1|MSLA01000008.1-1_10_REPEAT3;Parent=SEQF5158.1|MSLA01000008.1-1_10;Note=GTCTTAATGCACCTTGTGGTGCTGGGTGCTTTCTGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	binding_site	1484	1520	37	+	.	ID=SEQF5158.1|MSLA01000008.1-1_10_SPACER3;Parent=SEQF5158.1|MSLA01000008.1-1_10;Note=GCGAGATTGACACCATTGATGCCTGGCAGGACGACAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	direct_repeat	1521	1555	35	+	.	ID=SEQF5158.1|MSLA01000008.1-1_10_REPEAT4;Parent=SEQF5158.1|MSLA01000008.1-1_10;Note=GTCTTAATGCACCTTGTGGTGCTGGGTGCCTTCTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	repeat_region	2684	3005	322	+	.	ID=SEQF5158.1|MSLA01000008.1-1_12;Genome_ID=SEQF5158.1;Note=Predictor:CCtyper;Start:2684;End:3005;Consensus_Repeat:GTCTTAATGCACCTTGTGGTGCTGGGTGCTTTCTGAC;Number_of_Repeats:5;Repeat_Length:37.0;Average_Spacer_Length:34.2;Repeat_Identity:92.8;Spacer_Identity:43.3;Spacer_Length_Sem:0.6;Trusted:True;Cas_Type_Prediction: III-D;Cas_Subtype_Prediction:III-D;Subtype_Probability:0.995;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	direct_repeat	2684	2720	37	+	.	ID=SEQF5158.1|MSLA01000008.1-1_12_REPEAT1;Parent=SEQF5158.1|MSLA01000008.1-1_12;Note=GTCTTAATGTACCTTCTGGTGCTGGGTGCTTTCTGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	binding_site	2721	2756	36	+	.	ID=SEQF5158.1|MSLA01000008.1-1_12_SPACER1;Parent=SEQF5158.1|MSLA01000008.1-1_12;Note=CTTGTGGTATTGCCGCCGGACGCTCGAGAAGTCTTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	direct_repeat	2757	2793	37	+	.	ID=SEQF5158.1|MSLA01000008.1-1_12_REPEAT2;Parent=SEQF5158.1|MSLA01000008.1-1_12;Note=GTCTTAATGCACCTTCTGGTGCTGGGTGCTTTCTGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	binding_site	2794	2827	34	+	.	ID=SEQF5158.1|MSLA01000008.1-1_12_SPACER2;Parent=SEQF5158.1|MSLA01000008.1-1_12;Note=GGACCGGGGTGATATGCGACTACGAGGGCTCGGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	direct_repeat	2828	2864	37	+	.	ID=SEQF5158.1|MSLA01000008.1-1_12_REPEAT3;Parent=SEQF5158.1|MSLA01000008.1-1_12;Note=GTCTTAATGCACCTTGTGGTGCTGGGTGCTTTCTGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	binding_site	2865	2898	34	+	.	ID=SEQF5158.1|MSLA01000008.1-1_12_SPACER3;Parent=SEQF5158.1|MSLA01000008.1-1_12;Note=CAAAGGGATTGATCTGGAGGTCACCGACCTGTTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	direct_repeat	2899	2935	37	+	.	ID=SEQF5158.1|MSLA01000008.1-1_12_REPEAT4;Parent=SEQF5158.1|MSLA01000008.1-1_12;Note=GTCTTAATGCACCTTCTGGTACTGGGTGCTTTCTGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	binding_site	2936	2968	33	+	.	ID=SEQF5158.1|MSLA01000008.1-1_12_SPACER4;Parent=SEQF5158.1|MSLA01000008.1-1_12;Note=GGACAGCCGTTCCATGCGTCGCGATGCCAGAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000008.1	CCTyper	direct_repeat	2969	3005	37	+	.	ID=SEQF5158.1|MSLA01000008.1-1_12_REPEAT5;Parent=SEQF5158.1|MSLA01000008.1-1_12;Note=GTCTTAATGCACCTTGTGGTGCTGGGTGCTTTCTGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5158.1|MSLA01000015.1	CCTyper	OPERON	259032	274416	15385	+	.	ID=SEQF5158.1|MSLA01000015.1@6;Genome_ID=SEQF5158.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-D;Complete_Interference=50%;Complete_Adaptation=NA;Best_type=III-D;Best_score=11.0;Genes=CorA_1_CAS-III-D,CasR_0_CAS-III-D,Cas10_0_III,Csm3gr7_11_CAS-III-A-III-D,Csm3gr7_12_CAS-III-A-III-D,Csx19_4_CAS-III-D,Csm3gr7_4_CAS-III-A-III-D,Cas2_2_CAS-I-II-III-IV-V-VI,Cas1_0_CAS-I-II-III-IV-V-VI,RT_0_CAS-III-AM-III-B;Positions=193,196,197,198,199,200,201,202,203,204;E-values=5.80e-237,1.40e-167,1.80e-129,2.30e-14,3.30e-26,2.10e-64,1.60e-42,3.50e-21,4.20e-61,1.70e-63;CoverageSeq=0.989,0.989,0.78,0.347,0.657,0.995,0.771,0.802,0.937,0.76;CoverageHMM=0.949,0.989,0.995,0.685,0.995,1.0,0.767,0.975,0.647,0.852;Strand_Interference=1;Strand_Adaptation=NA
SEQF5158.1|MSLA01000015.1	CCTyper	CDS	263834	265798	655	+	.	ID=SEQF5158.1|MSLA01000015.1_197_cas;Genome_ID=SEQF5158.1;Feature_type=CDS;Product=Cas Prediction : Cas10_0_III;coding_strand=+;E-value=1.8e-129;Score=429.6;Coverage_Seq=0.7801526717557252;Coverage_Hmm=0.9951690821256038
SEQF5158.1|MSLA01000015.1	CCTyper	CDS	272584	273252	223	-	.	ID=SEQF5158.1|MSLA01000015.1_203_cas;Genome_ID=SEQF5158.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=4.2e-61;Score=204.1;Coverage_Seq=0.9372197309417041;Coverage_Hmm=0.6466876971608833
SEQF5158.1|MSLA01000015.1	CCTyper	CDS	272306	272593	96	-	.	ID=SEQF5158.1|MSLA01000015.1_202_cas;Genome_ID=SEQF5158.1;Feature_type=CDS;Product=Cas Prediction : Cas2_2_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=3.5e-21;Score=72.6;Coverage_Seq=0.8020833333333334;Coverage_Hmm=0.9746835443037974
SEQF5158.1|MSLA01000015.1	CCTyper	CDS	261060	263510	817	-	.	ID=SEQF5158.1|MSLA01000015.1_196_cas;Genome_ID=SEQF5158.1;Feature_type=CDS;Product=Cas Prediction : CasR_0_CAS-III-D;coding_strand=-;E-value=1.4000000000000001e-167;Score=556.3;Coverage_Seq=0.988984088127295;Coverage_Hmm=0.9890710382513661
SEQF5158.1|MSLA01000015.1	CCTyper	CDS	259032	260609	526	-	.	ID=SEQF5158.1|MSLA01000015.1_193_cas;Genome_ID=SEQF5158.1;Feature_type=CDS;Product=Cas Prediction : CorA_1_CAS-III-D;coding_strand=-;E-value=5.8e-237;Score=784.7;Coverage_Seq=0.9885931558935361;Coverage_Hmm=0.9487632508833922
SEQF5158.1|MSLA01000015.1	CCTyper	CDS	265795	267720	642	+	.	ID=SEQF5158.1|MSLA01000015.1_198_cas;Genome_ID=SEQF5158.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_11_CAS-III-A-III-D;coding_strand=+;E-value=2.3e-14;Score=50.6;Coverage_Seq=0.34735202492211836;Coverage_Hmm=0.6851851851851852
SEQF5158.1|MSLA01000015.1	CCTyper	CDS	267717	269465	583	+	.	ID=SEQF5158.1|MSLA01000015.1_199_cas;Genome_ID=SEQF5158.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_12_CAS-III-A-III-D;coding_strand=+;E-value=3.3e-26;Score=90.2;Coverage_Seq=0.6569468267581475;Coverage_Hmm=0.9949748743718593
SEQF5158.1|MSLA01000015.1	CCTyper	CDS	270029	272227	733	+	.	ID=SEQF5158.1|MSLA01000015.1_201_cas;Genome_ID=SEQF5158.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_4_CAS-III-A-III-D;coding_strand=+;E-value=1.6e-42;Score=143.6;Coverage_Seq=0.7708049113233287;Coverage_Hmm=0.7671875
SEQF5158.1|MSLA01000015.1	CCTyper	CDS	269458	270027	190	+	.	ID=SEQF5158.1|MSLA01000015.1_200_cas;Genome_ID=SEQF5158.1;Feature_type=CDS;Product=Cas Prediction : Csx19_4_CAS-III-D;coding_strand=+;E-value=2.1e-64;Score=213.5;Coverage_Seq=0.9947368421052631;Coverage_Hmm=1.0
SEQF5158.1|MSLA01000015.1	CCTyper	CDS	273415	274416	334	-	.	ID=SEQF5158.1|MSLA01000015.1_204_cas;Genome_ID=SEQF5158.1;Feature_type=CDS;Product=Cas Prediction : RT_0_CAS-III-AM-III-B;coding_strand=-;E-value=1.7e-63;Score=211.6;Coverage_Seq=0.7604790419161677;Coverage_Hmm=0.8523489932885906