SEQF5177.1|RRCM01000001.1	CCTyper	repeat_region	1298735	1299027	293	+	.	ID=SEQF5177.1|RRCM01000001.1_1;Genome_ID=SEQF5177.1;Note=Predictor:CCtyper;Start:1298735;End:1299027;Consensus_Repeat:GTGAGTACCTTACCTATAAGGAATGGAAAC;Number_of_Repeats:5;Repeat_Length:30;Average_Spacer_Length:35.8;Repeat_Identity:92.7;Spacer_Identity:45.0;Spacer_Length_Sem:0.9;Trusted:True;Cas_Type_Prediction: III-D;Cas_Subtype_Prediction:III-D;Subtype_Probability:0.966;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5177.1|RRCM01000001.1	CCTyper	direct_repeat	1298735	1298764	30	+	.	ID=SEQF5177.1|RRCM01000001.1_1_REPEAT1;Parent=SEQF5177.1|RRCM01000001.1_1;Note=GTGAGTACCTTACCTATAAGGAATGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5177.1|RRCM01000001.1	CCTyper	binding_site	1298765	1298798	34	+	.	ID=SEQF5177.1|RRCM01000001.1_1_SPACER1;Parent=SEQF5177.1|RRCM01000001.1_1;Note=ATTTTACCTCCACTTCAGTAAGTGTAGGTTTCAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5177.1|RRCM01000001.1	CCTyper	direct_repeat	1298799	1298828	30	+	.	ID=SEQF5177.1|RRCM01000001.1_1_REPEAT2;Parent=SEQF5177.1|RRCM01000001.1_1;Note=GTGAGTACCTTACCTATAAGGAATGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5177.1|RRCM01000001.1	CCTyper	binding_site	1298829	1298864	36	+	.	ID=SEQF5177.1|RRCM01000001.1_1_SPACER2;Parent=SEQF5177.1|RRCM01000001.1_1;Note=TATTCTCTCCACCTCTTTGCCTTTTGCTTTAGATTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5177.1|RRCM01000001.1	CCTyper	direct_repeat	1298865	1298894	30	+	.	ID=SEQF5177.1|RRCM01000001.1_1_REPEAT3;Parent=SEQF5177.1|RRCM01000001.1_1;Note=GTGAGTACCTTACCTATAAGGAATGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5177.1|RRCM01000001.1	CCTyper	binding_site	1298895	1298932	38	+	.	ID=SEQF5177.1|RRCM01000001.1_1_SPACER3;Parent=SEQF5177.1|RRCM01000001.1_1;Note=TCGCCCTTTGCTATCTGCTTATGATATGAGGGTATTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5177.1|RRCM01000001.1	CCTyper	direct_repeat	1298933	1298962	30	+	.	ID=SEQF5177.1|RRCM01000001.1_1_REPEAT4;Parent=SEQF5177.1|RRCM01000001.1_1;Note=GTGAGTACCTTACCTATAAGGAATGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5177.1|RRCM01000001.1	CCTyper	binding_site	1298963	1298997	35	+	.	ID=SEQF5177.1|RRCM01000001.1_1_SPACER4;Parent=SEQF5177.1|RRCM01000001.1_1;Note=ATTATAAGTATCAGATTCCTTCTCTTGAAGTTTCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5177.1|RRCM01000001.1	CCTyper	direct_repeat	1298998	1299027	30	+	.	ID=SEQF5177.1|RRCM01000001.1_1_REPEAT5;Parent=SEQF5177.1|RRCM01000001.1_1;Note=GTGAGTACCTTACCTATAAGGAATACACCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5177.1|RRCM01000001.1	CCTyper	OPERON	1299444	1310208	10765	-	.	ID=SEQF5177.1|RRCM01000001.1@31;Genome_ID=SEQF5177.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-D;Complete_Interference=50%;Complete_Adaptation=NA;Best_type=III-D;Best_score=10.0;Genes=CasR_4_CAS-III-D,Csm3gr7_4_CAS-III-A-III-D,Csx19_1_CAS-III-D,Csm3gr7_2_CAS-III-A-III-D,Cas10_7_CAS-III,Cas6_7_CAS-I-II-III-IV-V-VI,Csx20_1_CAS-I-III;Positions=1227,1228,1229,1230,1232,1233,1234;E-values=1.80e-234,1.40e-59,4.60e-10,2.70e-26,1.00e-60,4.10e-39,4.70e-31;CoverageSeq=0.996,0.884,0.637,0.725,0.732,0.988,0.992;CoverageHMM=0.983,0.919,0.625,0.989,0.971,0.975,0.968;Strand_Interference=-1;Strand_Adaptation=NA
SEQF5177.1|RRCM01000001.1	CCTyper	CDS	1307323	1309047	575	-	.	ID=SEQF5177.1|RRCM01000001.1_1232_cas;Genome_ID=SEQF5177.1;Feature_type=CDS;Product=Cas Prediction : Cas10_7_CAS-III;coding_strand=-;E-value=1.0000000000000001e-60;Score=203.1;Coverage_Seq=0.7321739130434782;Coverage_Hmm=0.9707317073170731
SEQF5177.1|RRCM01000001.1	CCTyper	CDS	1309087	1309827	247	-	.	ID=SEQF5177.1|RRCM01000001.1_1233_cas;Genome_ID=SEQF5177.1;Feature_type=CDS;Product=Cas Prediction : Cas6_7_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=4.1e-39;Score=132.2;Coverage_Seq=0.9878542510121457;Coverage_Hmm=0.975103734439834
SEQF5177.1|RRCM01000001.1	CCTyper	CDS	1299444	1301015	524	-	.	ID=SEQF5177.1|RRCM01000001.1_1227_cas;Genome_ID=SEQF5177.1;Feature_type=CDS;Product=Cas Prediction : CasR_4_CAS-III-D;coding_strand=-;E-value=1.8e-234;Score=776.9;Coverage_Seq=0.9961832061068703;Coverage_Hmm=0.9830188679245283
SEQF5177.1|RRCM01000001.1	CCTyper	CDS	1303547	1305028	494	-	.	ID=SEQF5177.1|RRCM01000001.1_1230_cas;Genome_ID=SEQF5177.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_2_CAS-III-A-III-D;coding_strand=-;E-value=2.7e-26;Score=90.3;Coverage_Seq=0.7246963562753036;Coverage_Hmm=0.9888888888888889
SEQF5177.1|RRCM01000001.1	CCTyper	CDS	1301045	1303033	663	-	.	ID=SEQF5177.1|RRCM01000001.1_1228_cas;Genome_ID=SEQF5177.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_4_CAS-III-A-III-D;coding_strand=-;E-value=1.4000000000000001e-59;Score=199.8;Coverage_Seq=0.8838612368024132;Coverage_Hmm=0.91875
SEQF5177.1|RRCM01000001.1	CCTyper	CDS	1303036	1303572	179	-	.	ID=SEQF5177.1|RRCM01000001.1_1229_cas;Genome_ID=SEQF5177.1;Feature_type=CDS;Product=Cas Prediction : Csx19_1_CAS-III-D;coding_strand=-;E-value=4.6e-10;Score=36.4;Coverage_Seq=0.6368715083798883;Coverage_Hmm=0.625
SEQF5177.1|RRCM01000001.1	CCTyper	CDS	1309852	1310208	119	-	.	ID=SEQF5177.1|RRCM01000001.1_1234_cas;Genome_ID=SEQF5177.1;Feature_type=CDS;Product=Cas Prediction : Csx20_1_CAS-I-III;coding_strand=-;E-value=4.7e-31;Score=105.2;Coverage_Seq=0.9915966386554622;Coverage_Hmm=0.968