SEQF5288.1|JAHSUW010000001.1	CCTyper	repeat_region	488297	489112	816	+	.	ID=SEQF5288.1|JAHSUW010000001.1_1;Genome_ID=SEQF5288.1;Note=Predictor:CCtyper;Start:488297;End:489112;Consensus_Repeat:GTTCTCGTCCCCTGTTCTTCGGGGTAGTTATCGAAT;Number_of_Repeats:12;Repeat_Length:36;Average_Spacer_Length:34.9;Repeat_Identity:77.5;Spacer_Identity:44.4;Spacer_Length_Sem:0.7;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.99;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	direct_repeat	488297	488332	36	+	.	ID=SEQF5288.1|JAHSUW010000001.1_1_REPEAT1;Parent=SEQF5288.1|JAHSUW010000001.1_1;Note=TTTCTTGTCCCCTCTTTTACGGGGTGGTTGTCAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	binding_site	488333	488367	35	+	.	ID=SEQF5288.1|JAHSUW010000001.1_1_SPACER1;Parent=SEQF5288.1|JAHSUW010000001.1_1;Note=GAGAACGTGACAGTTTCCGTAAGCAAAGAGATGAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	direct_repeat	488368	488403	36	+	.	ID=SEQF5288.1|JAHSUW010000001.1_1_REPEAT2;Parent=SEQF5288.1|JAHSUW010000001.1_1;Note=GTTCTCGTCCCCTGTTCTCCGGGGTGGTTGTCGATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	binding_site	488404	488439	36	+	.	ID=SEQF5288.1|JAHSUW010000001.1_1_SPACER2;Parent=SEQF5288.1|JAHSUW010000001.1_1;Note=GTAGAGCACACATGGGACGTGGTCGTGATTATTTCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	direct_repeat	488440	488475	36	+	.	ID=SEQF5288.1|JAHSUW010000001.1_1_REPEAT3;Parent=SEQF5288.1|JAHSUW010000001.1_1;Note=GTTCTCGTCCCCTGTTCTCCGGGGTGGGTATTGAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	binding_site	488476	488508	33	+	.	ID=SEQF5288.1|JAHSUW010000001.1_1_SPACER3;Parent=SEQF5288.1|JAHSUW010000001.1_1;Note=TTACGACATTACAACAGACGACAATCATAAATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	direct_repeat	488509	488544	36	+	.	ID=SEQF5288.1|JAHSUW010000001.1_1_REPEAT4;Parent=SEQF5288.1|JAHSUW010000001.1_1;Note=GTTCTCGTTCCCTCTGTTACGGGGTGGGTATCGAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	binding_site	488545	488580	36	+	.	ID=SEQF5288.1|JAHSUW010000001.1_1_SPACER4;Parent=SEQF5288.1|JAHSUW010000001.1_1;Note=CCACACATTCAAACAATGATGTTTGAACATTTTAAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	direct_repeat	488581	488616	36	+	.	ID=SEQF5288.1|JAHSUW010000001.1_1_REPEAT5;Parent=SEQF5288.1|JAHSUW010000001.1_1;Note=GTTCCCGTCCCCTGTTCTACGGAGTAGTTATCGAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	binding_site	488617	488646	30	+	.	ID=SEQF5288.1|JAHSUW010000001.1_1_SPACER5;Parent=SEQF5288.1|JAHSUW010000001.1_1;Note=TACAATCGAACAAACATATGGTAAAGATAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	direct_repeat	488647	488682	36	+	.	ID=SEQF5288.1|JAHSUW010000001.1_1_REPEAT6;Parent=SEQF5288.1|JAHSUW010000001.1_1;Note=GTTCTCGTCCTCTGTTCTCCGAGGTGGTTATCGAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	binding_site	488683	488718	36	+	.	ID=SEQF5288.1|JAHSUW010000001.1_1_SPACER6;Parent=SEQF5288.1|JAHSUW010000001.1_1;Note=AATGAACTTCAAATATACTAGCCAACCATTCACAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	direct_repeat	488719	488754	36	+	.	ID=SEQF5288.1|JAHSUW010000001.1_1_REPEAT7;Parent=SEQF5288.1|JAHSUW010000001.1_1;Note=GTTCTCGTCCCCTGTTCTCCGGGGTGGTTGTCGAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	binding_site	488755	488792	38	+	.	ID=SEQF5288.1|JAHSUW010000001.1_1_SPACER7;Parent=SEQF5288.1|JAHSUW010000001.1_1;Note=ATAAATGCCTAACGACTAAGTTTCTAGGTAGCTTATGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	direct_repeat	488793	488828	36	+	.	ID=SEQF5288.1|JAHSUW010000001.1_1_REPEAT8;Parent=SEQF5288.1|JAHSUW010000001.1_1;Note=TCTCGTCCCCTCTTTTTTACGGGGTGGTTGTCGATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	binding_site	488829	488863	35	+	.	ID=SEQF5288.1|JAHSUW010000001.1_1_SPACER8;Parent=SEQF5288.1|JAHSUW010000001.1_1;Note=TGACAAAATACATTAAACTAATTGAGGATTTATAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	direct_repeat	488864	488899	36	+	.	ID=SEQF5288.1|JAHSUW010000001.1_1_REPEAT9;Parent=SEQF5288.1|JAHSUW010000001.1_1;Note=GTTCTCGTCCCCTCTTTTACGGGGTGGTTGTCGATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	binding_site	488900	488936	37	+	.	ID=SEQF5288.1|JAHSUW010000001.1_1_SPACER9;Parent=SEQF5288.1|JAHSUW010000001.1_1;Note=AACAAGTACAATCAGAGTTAATGAACTTCTTATTAGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	direct_repeat	488937	488972	36	+	.	ID=SEQF5288.1|JAHSUW010000001.1_1_REPEAT10;Parent=SEQF5288.1|JAHSUW010000001.1_1;Note=GTTCTCGTCCCCTGTTCTTCGGGGTAGTTATCGAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	binding_site	488973	489006	34	+	.	ID=SEQF5288.1|JAHSUW010000001.1_1_SPACER10;Parent=SEQF5288.1|JAHSUW010000001.1_1;Note=AAGACGCATTTAGAAAAGCTGTTCAAAAAGAAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	direct_repeat	489007	489042	36	+	.	ID=SEQF5288.1|JAHSUW010000001.1_1_REPEAT11;Parent=SEQF5288.1|JAHSUW010000001.1_1;Note=GTTCTCGTCCCCTGTTCTTCGGGGTAGTTATCGAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	binding_site	489043	489076	34	+	.	ID=SEQF5288.1|JAHSUW010000001.1_1_SPACER11;Parent=SEQF5288.1|JAHSUW010000001.1_1;Note=AAATTATATTTTTTAAGGGGTGTAGAAAATGAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	direct_repeat	489077	489112	36	+	.	ID=SEQF5288.1|JAHSUW010000001.1_1_REPEAT12;Parent=SEQF5288.1|JAHSUW010000001.1_1;Note=GTTCTCGTCCCCTGTTCTTCGGGGTAGTTATCGAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	repeat_region	497832	498580	749	+	.	ID=SEQF5288.1|JAHSUW010000001.1_2;Genome_ID=SEQF5288.1;Note=Predictor:CCtyper;Start:497832;End:498580;Consensus_Repeat:GTTCTCGTCCCCTATTCTTCGGGGTTGTTATCGATC;Number_of_Repeats:11;Repeat_Length:36;Average_Spacer_Length:35.3;Repeat_Identity:95.1;Spacer_Identity:46.3;Spacer_Length_Sem:0.4;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.963;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	direct_repeat	497832	497867	36	+	.	ID=SEQF5288.1|JAHSUW010000001.1_2_REPEAT1;Parent=SEQF5288.1|JAHSUW010000001.1_2;Note=CACTCTGTCCCCTGTTCTTCGGGGTAGTTATCGATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	binding_site	497868	497903	36	+	.	ID=SEQF5288.1|JAHSUW010000001.1_2_SPACER1;Parent=SEQF5288.1|JAHSUW010000001.1_2;Note=ACAAACATTTACGGAAATTACAGCAATCACACAAGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	direct_repeat	497904	497939	36	+	.	ID=SEQF5288.1|JAHSUW010000001.1_2_REPEAT2;Parent=SEQF5288.1|JAHSUW010000001.1_2;Note=GTTCTCGTCCCCTATTCTTCGGGGTTGTTATCGATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	binding_site	497940	497974	35	+	.	ID=SEQF5288.1|JAHSUW010000001.1_2_SPACER2;Parent=SEQF5288.1|JAHSUW010000001.1_2;Note=AACAAACATTCAGAACGGAAACTAAAAAGGAATTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	direct_repeat	497975	498010	36	+	.	ID=SEQF5288.1|JAHSUW010000001.1_2_REPEAT3;Parent=SEQF5288.1|JAHSUW010000001.1_2;Note=GTTCTCGTCCCCTATTCTTCGGGGTTGTTATCGATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	binding_site	498011	498045	35	+	.	ID=SEQF5288.1|JAHSUW010000001.1_2_SPACER3;Parent=SEQF5288.1|JAHSUW010000001.1_2;Note=ACAAATTTAACAGAACTAGTTTAATTAATGATAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	direct_repeat	498046	498081	36	+	.	ID=SEQF5288.1|JAHSUW010000001.1_2_REPEAT4;Parent=SEQF5288.1|JAHSUW010000001.1_2;Note=GTTCTCGTCCCCTATTCTTCGGGGTTGTTATCGATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	binding_site	498082	498117	36	+	.	ID=SEQF5288.1|JAHSUW010000001.1_2_SPACER4;Parent=SEQF5288.1|JAHSUW010000001.1_2;Note=GACAGTAATTAAAAATAATGTAGTAAGTACAGAAGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	direct_repeat	498118	498153	36	+	.	ID=SEQF5288.1|JAHSUW010000001.1_2_REPEAT5;Parent=SEQF5288.1|JAHSUW010000001.1_2;Note=GTTCTCGTCCCCTATTCTTCGGGGTTGTTATCGATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	binding_site	498154	498189	36	+	.	ID=SEQF5288.1|JAHSUW010000001.1_2_SPACER5;Parent=SEQF5288.1|JAHSUW010000001.1_2;Note=TACGACCAACAACATAGATATAATAAGTATCTTTAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	direct_repeat	498190	498225	36	+	.	ID=SEQF5288.1|JAHSUW010000001.1_2_REPEAT6;Parent=SEQF5288.1|JAHSUW010000001.1_2;Note=GTTCTCGTCCCCTATTCTTCGGGGTTGTTATCGATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	binding_site	498226	498258	33	+	.	ID=SEQF5288.1|JAHSUW010000001.1_2_SPACER6;Parent=SEQF5288.1|JAHSUW010000001.1_2;Note=TCGTCTCAATGTAATTACCATTAGGCTTTCAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	direct_repeat	498259	498294	36	+	.	ID=SEQF5288.1|JAHSUW010000001.1_2_REPEAT7;Parent=SEQF5288.1|JAHSUW010000001.1_2;Note=GTTCTCGTCCCCTATTCTTCGGGGTTGTTATCGATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	binding_site	498295	498329	35	+	.	ID=SEQF5288.1|JAHSUW010000001.1_2_SPACER7;Parent=SEQF5288.1|JAHSUW010000001.1_2;Note=AAATGGCGTACTGTTCGCAATCGAGCCATTCAGAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	direct_repeat	498330	498365	36	+	.	ID=SEQF5288.1|JAHSUW010000001.1_2_REPEAT8;Parent=SEQF5288.1|JAHSUW010000001.1_2;Note=GTTCTCGTCCCCTATTCTTCGGGGTTGTTATCGATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	binding_site	498366	498399	34	+	.	ID=SEQF5288.1|JAHSUW010000001.1_2_SPACER8;Parent=SEQF5288.1|JAHSUW010000001.1_2;Note=ATATAATAATGATGATACTATTATATTAAACTTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	direct_repeat	498400	498435	36	+	.	ID=SEQF5288.1|JAHSUW010000001.1_2_REPEAT9;Parent=SEQF5288.1|JAHSUW010000001.1_2;Note=GTTCTCGTCCCCTATTCTTCGGGGTTGTTATCGATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	binding_site	498436	498472	37	+	.	ID=SEQF5288.1|JAHSUW010000001.1_2_SPACER9;Parent=SEQF5288.1|JAHSUW010000001.1_2;Note=TTATTTAGCATTATTAATAATGAAGTTAAAAAATATT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	direct_repeat	498473	498508	36	+	.	ID=SEQF5288.1|JAHSUW010000001.1_2_REPEAT10;Parent=SEQF5288.1|JAHSUW010000001.1_2;Note=GTTCTCGTCCCCTATTCTTCGGGGTTGTTATCGATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	binding_site	498509	498544	36	+	.	ID=SEQF5288.1|JAHSUW010000001.1_2_SPACER10;Parent=SEQF5288.1|JAHSUW010000001.1_2;Note=TGTAAATAAAGATGTTACTATTACAAAAGTACACAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	direct_repeat	498545	498580	36	+	.	ID=SEQF5288.1|JAHSUW010000001.1_2_REPEAT11;Parent=SEQF5288.1|JAHSUW010000001.1_2;Note=GTTCTCGTCCCCTATTCTTCGGGGTTGTTATCGATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5288.1|JAHSUW010000001.1	CCTyper	OPERON	489246	497757	8512	-	.	ID=SEQF5288.1|JAHSUW010000001.1@10;Genome_ID=SEQF5288.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-A;Complete_Interference=100%;Complete_Adaptation=NA;Best_type=III-A;Best_score=20.0;Genes=Cas6_0_CAS-I-II-III-IV-V-VI,Csm6_0_IIIA,Csm5gr7_0_CAS-III-A-III-D,Csm4gr5_1_CAS-III-A,Csm3gr7_1_CAS-III-A-III-D,Csm2gr11_0_CAS-III-A,Cas10_1_CAS-III,Cas2_0_CAS-I-II-III-IV-V-VI,Cas1_4_CAS-I-II-III-IV-V-VI;Positions=457,458,459,460,461,462,463,464,465;E-values=5.40e-26,1.10e-131,1.70e-30,7.40e-51,1.90e-84,2.70e-25,1.40e-211,8.90e-26,1.10e-95;CoverageSeq=0.816,0.853,0.713,0.993,0.953,0.681,0.844,0.892,0.917;CoverageHMM=0.99,1.0,0.636,0.978,0.991,1.0,0.998,0.967,0.996;Strand_Interference=-1;Strand_Adaptation=NA
SEQF5288.1|JAHSUW010000001.1	CCTyper	CDS	494260	496533	758	-	.	ID=SEQF5288.1|JAHSUW010000001.1_463_cas;Genome_ID=SEQF5288.1;Feature_type=CDS;Product=Cas Prediction : Cas10_1_CAS-III;coding_strand=-;E-value=1.4000000000000001e-211;Score=701.4;Coverage_Seq=0.8443271767810027;Coverage_Hmm=0.9984709480122325
SEQF5288.1|JAHSUW010000001.1	CCTyper	CDS	496852	497757	302	-	.	ID=SEQF5288.1|JAHSUW010000001.1_465_cas;Genome_ID=SEQF5288.1;Feature_type=CDS;Product=Cas Prediction : Cas1_4_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.1e-95;Score=316.9;Coverage_Seq=0.9172185430463576;Coverage_Hmm=0.9963636363636363
SEQF5288.1|JAHSUW010000001.1	CCTyper	CDS	496547	496852	102	-	.	ID=SEQF5288.1|JAHSUW010000001.1_464_cas;Genome_ID=SEQF5288.1;Feature_type=CDS;Product=Cas Prediction : Cas2_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=8.9e-26;Score=87.1;Coverage_Seq=0.8921568627450981;Coverage_Hmm=0.9666666666666667
SEQF5288.1|JAHSUW010000001.1	CCTyper	CDS	489246	489980	245	-	.	ID=SEQF5288.1|JAHSUW010000001.1_457_cas;Genome_ID=SEQF5288.1;Feature_type=CDS;Product=Cas Prediction : Cas6_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=5.4e-26;Score=89.1;Coverage_Seq=0.8163265306122449;Coverage_Hmm=0.9896907216494846
SEQF5288.1|JAHSUW010000001.1	CCTyper	CDS	493835	494257	141	-	.	ID=SEQF5288.1|JAHSUW010000001.1_462_cas;Genome_ID=SEQF5288.1;Feature_type=CDS;Product=Cas Prediction : Csm2gr11_0_CAS-III-A;coding_strand=-;E-value=2.6999999999999997e-25;Score=86.1;Coverage_Seq=0.6808510638297872;Coverage_Hmm=1.0
SEQF5288.1|JAHSUW010000001.1	CCTyper	CDS	493189	493833	215	-	.	ID=SEQF5288.1|JAHSUW010000001.1_461_cas;Genome_ID=SEQF5288.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_1_CAS-III-A-III-D;coding_strand=-;E-value=1.9e-84;Score=279.7;Coverage_Seq=0.9534883720930233;Coverage_Hmm=0.9906976744186047
SEQF5288.1|JAHSUW010000001.1	CCTyper	CDS	492270	493178	303	-	.	ID=SEQF5288.1|JAHSUW010000001.1_460_cas;Genome_ID=SEQF5288.1;Feature_type=CDS;Product=Cas Prediction : Csm4gr5_1_CAS-III-A;coding_strand=-;E-value=7.4e-51;Score=170.1;Coverage_Seq=0.9933993399339934;Coverage_Hmm=0.9777777777777777
SEQF5288.1|JAHSUW010000001.1	CCTyper	CDS	491245	492267	341	-	.	ID=SEQF5288.1|JAHSUW010000001.1_459_cas;Genome_ID=SEQF5288.1;Feature_type=CDS;Product=Cas Prediction : Csm5gr7_0_CAS-III-A-III-D;coding_strand=-;E-value=1.7e-30;Score=103.4;Coverage_Seq=0.7126099706744868;Coverage_Hmm=0.6356164383561644
SEQF5288.1|JAHSUW010000001.1	CCTyper	CDS	489977	491245	423	-	.	ID=SEQF5288.1|JAHSUW010000001.1_458_cas;Genome_ID=SEQF5288.1;Feature_type=CDS;Product=Cas Prediction : Csm6_0_IIIA;coding_strand=-;E-value=1.1e-131;Score=435.9;Coverage_Seq=0.8534278959810875;Coverage_Hmm=1.0