SEQF5339.1|LR134490.1	CCTyper	repeat_region	1063578	1064179	602	+	.	ID=SEQF5339.1|LR134490.1_1;Genome_ID=SEQF5339.1;Note=Predictor:CCtyper;Start:1063578;End:1064179;Consensus_Repeat:GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC;Number_of_Repeats:9;Repeat_Length:37;Average_Spacer_Length:33.6;Repeat_Identity:91.9;Spacer_Identity:43.8;Spacer_Length_Sem:0.6;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.944;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5339.1|LR134490.1	CCTyper	direct_repeat	1063578	1063614	37	+	.	ID=SEQF5339.1|LR134490.1_1_REPEAT1;Parent=SEQF5339.1|LR134490.1_1;Note=GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5339.1|LR134490.1	CCTyper	binding_site	1063615	1063648	34	+	.	ID=SEQF5339.1|LR134490.1_1_SPACER1;Parent=SEQF5339.1|LR134490.1_1;Note=AACTTTACGCAAACGGTGTCTTTTGATAATTCAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5339.1|LR134490.1	CCTyper	direct_repeat	1063649	1063685	37	+	.	ID=SEQF5339.1|LR134490.1_1_REPEAT2;Parent=SEQF5339.1|LR134490.1_1;Note=GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5339.1|LR134490.1	CCTyper	binding_site	1063686	1063721	36	+	.	ID=SEQF5339.1|LR134490.1_1_SPACER2;Parent=SEQF5339.1|LR134490.1_1;Note=ATTGGAATGTTATCTTCAATAACAAAATTTGAATGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5339.1|LR134490.1	CCTyper	direct_repeat	1063722	1063758	37	+	.	ID=SEQF5339.1|LR134490.1_1_REPEAT3;Parent=SEQF5339.1|LR134490.1_1;Note=GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5339.1|LR134490.1	CCTyper	binding_site	1063759	1063791	33	+	.	ID=SEQF5339.1|LR134490.1_1_SPACER3;Parent=SEQF5339.1|LR134490.1_1;Note=GTTACTGTATCTAATACATCATCAAAGTTAAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5339.1|LR134490.1	CCTyper	direct_repeat	1063792	1063828	37	+	.	ID=SEQF5339.1|LR134490.1_1_REPEAT4;Parent=SEQF5339.1|LR134490.1_1;Note=GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5339.1|LR134490.1	CCTyper	binding_site	1063829	1063862	34	+	.	ID=SEQF5339.1|LR134490.1_1_SPACER4;Parent=SEQF5339.1|LR134490.1_1;Note=CCATAGTACTTACTGCACTTTCAACTAAAGACTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5339.1|LR134490.1	CCTyper	direct_repeat	1063863	1063899	37	+	.	ID=SEQF5339.1|LR134490.1_1_REPEAT5;Parent=SEQF5339.1|LR134490.1_1;Note=GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5339.1|LR134490.1	CCTyper	binding_site	1063900	1063930	31	+	.	ID=SEQF5339.1|LR134490.1_1_SPACER5;Parent=SEQF5339.1|LR134490.1_1;Note=GACTGTTTCTGTTGCAATCCACGATCACACA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5339.1|LR134490.1	CCTyper	direct_repeat	1063931	1063967	37	+	.	ID=SEQF5339.1|LR134490.1_1_REPEAT6;Parent=SEQF5339.1|LR134490.1_1;Note=GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5339.1|LR134490.1	CCTyper	binding_site	1063968	1063999	32	+	.	ID=SEQF5339.1|LR134490.1_1_SPACER6;Parent=SEQF5339.1|LR134490.1_1;Note=TTGAAGTCATTTAAAATAAACATCACTTGTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5339.1|LR134490.1	CCTyper	direct_repeat	1064000	1064036	37	+	.	ID=SEQF5339.1|LR134490.1_1_REPEAT7;Parent=SEQF5339.1|LR134490.1_1;Note=GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5339.1|LR134490.1	CCTyper	binding_site	1064037	1064071	35	+	.	ID=SEQF5339.1|LR134490.1_1_SPACER7;Parent=SEQF5339.1|LR134490.1_1;Note=ACGGCAAAATAAGCCGTCATCCCCACATCACTACG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5339.1|LR134490.1	CCTyper	direct_repeat	1064072	1064108	37	+	.	ID=SEQF5339.1|LR134490.1_1_REPEAT8;Parent=SEQF5339.1|LR134490.1_1;Note=GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5339.1|LR134490.1	CCTyper	binding_site	1064109	1064142	34	+	.	ID=SEQF5339.1|LR134490.1_1_SPACER8;Parent=SEQF5339.1|LR134490.1_1;Note=TCATGGTCTTCAGGAATGTCTTTGTTCACGATAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5339.1|LR134490.1	CCTyper	direct_repeat	1064143	1064179	37	+	.	ID=SEQF5339.1|LR134490.1_1_REPEAT9;Parent=SEQF5339.1|LR134490.1_1;Note=GTCGAAAGACATCGACTGCCTAAAAGGGATGTACATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5339.1|LR134490.1	CCTyper	OPERON	1050751	1066397	15647	-	.	ID=SEQF5339.1|LR134490.1@22;Genome_ID=SEQF5339.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-A;Complete_Interference=100%;Complete_Adaptation=NA;Best_type=III-A;Best_score=20.0;Genes=Csx1_8_CAS-III,Can2_Card1_17_CAS-III,Csx16_3_CAS-I-III,Cas6_10_CAS-I-II-III-IV-V-VI,Csm5gr7_3_CAS-III-A-III-D,Csm4gr5_0_CAS-III-A-III-D,Csm3gr7_1_CAS-III-A-III-D,Csm2gr11_7_CAS-III-A,Cas10_0_IIIA,Cas2_2_CAS-I-II-III-IV-V-VI,Cas1_8_CAS-I-II-III-IV-V-VI,Cas2_2_CAS-I-II-III-IV-V-VI,RecD_0_IVD;Positions=988,989,990,991,992,993,994,995,996,998,999,1000,1003;E-values=4.80e-76,4.20e-87,3.70e-35,4.50e-101,1.00e-23,1.80e-115,2.40e-73,4.50e-21,6.40e-111,2.50e-14,2.00e-79,2.00e-16,9.90e-21;CoverageSeq=0.597,0.982,0.928,0.99,0.569,0.978,0.931,0.831,0.738,0.695,0.793,0.711,0.693;CoverageHMM=0.995,0.992,0.989,0.981,0.708,0.991,0.967,0.936,0.843,0.835,0.996,0.873,0.402;Strand_Interference=-1;Strand_Adaptation=NA
SEQF5339.1|LR134490.1	CCTyper	CDS	1051919	1053091	391	-	.	ID=SEQF5339.1|LR134490.1_989_cas;Genome_ID=SEQF5339.1;Feature_type=CDS;Product=Cas Prediction : Can2_Card1_17_CAS-III;coding_strand=-;E-value=4.2e-87;Score=289.0;Coverage_Seq=0.9820971867007673;Coverage_Hmm=0.9921052631578947
SEQF5339.1|LR134490.1	CCTyper	CDS	1057976	1060147	724	-	.	ID=SEQF5339.1|LR134490.1_996_cas;Genome_ID=SEQF5339.1;Feature_type=CDS;Product=Cas Prediction : Cas10_0_IIIA;coding_strand=-;E-value=6.4000000000000004e-111;Score=368.8;Coverage_Seq=0.7375690607734806;Coverage_Hmm=0.8430769230769231
SEQF5339.1|LR134490.1	CCTyper	CDS	1062017	1063087	357	+	.	ID=SEQF5339.1|LR134490.1_999_cas;Genome_ID=SEQF5339.1;Feature_type=CDS;Product=Cas Prediction : Cas1_8_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=2e-79;Score=263.5;Coverage_Seq=0.7927170868347339;Coverage_Hmm=0.9964664310954063
SEQF5339.1|LR134490.1	CCTyper	CDS	1063098	1063388	97	+	.	ID=SEQF5339.1|LR134490.1_1000_cas;Genome_ID=SEQF5339.1;Feature_type=CDS;Product=Cas Prediction : Cas2_2_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=2e-16;Score=56.8;Coverage_Seq=0.711340206185567;Coverage_Hmm=0.8734177215189873
SEQF5339.1|LR134490.1	CCTyper	CDS	1061724	1062008	95	+	.	ID=SEQF5339.1|LR134490.1_998_cas;Genome_ID=SEQF5339.1;Feature_type=CDS;Product=Cas Prediction : Cas2_2_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=2.5e-14;Score=50.1;Coverage_Seq=0.6947368421052632;Coverage_Hmm=0.8354430379746836
SEQF5339.1|LR134490.1	CCTyper	CDS	1053450	1054370	307	-	.	ID=SEQF5339.1|LR134490.1_991_cas;Genome_ID=SEQF5339.1;Feature_type=CDS;Product=Cas Prediction : Cas6_10_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=4.5e-101;Score=335.0;Coverage_Seq=0.990228013029316;Coverage_Hmm=0.9813664596273292
SEQF5339.1|LR134490.1	CCTyper	CDS	1057577	1057966	130	-	.	ID=SEQF5339.1|LR134490.1_995_cas;Genome_ID=SEQF5339.1;Feature_type=CDS;Product=Cas Prediction : Csm2gr11_7_CAS-III-A;coding_strand=-;E-value=4.5e-21;Score=72.7;Coverage_Seq=0.8307692307692308;Coverage_Hmm=0.9363636363636364
SEQF5339.1|LR134490.1	CCTyper	CDS	1056868	1057560	231	-	.	ID=SEQF5339.1|LR134490.1_994_cas;Genome_ID=SEQF5339.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_1_CAS-III-A-III-D;coding_strand=-;E-value=2.4e-73;Score=243.2;Coverage_Seq=0.9307359307359307;Coverage_Hmm=0.9674418604651163
SEQF5339.1|LR134490.1	CCTyper	CDS	1055920	1056858	313	-	.	ID=SEQF5339.1|LR134490.1_993_cas;Genome_ID=SEQF5339.1;Feature_type=CDS;Product=Cas Prediction : Csm4gr5_0_CAS-III-A-III-D;coding_strand=-;E-value=1.8e-115;Score=382.3;Coverage_Seq=0.9776357827476039;Coverage_Hmm=0.9905362776025236
SEQF5339.1|LR134490.1	CCTyper	CDS	1054370	1055923	518	-	.	ID=SEQF5339.1|LR134490.1_992_cas;Genome_ID=SEQF5339.1;Feature_type=CDS;Product=Cas Prediction : Csm5gr7_3_CAS-III-A-III-D;coding_strand=-;E-value=1.0000000000000001e-23;Score=80.7;Coverage_Seq=0.5694980694980695;Coverage_Hmm=0.7084398976982097
SEQF5339.1|LR134490.1	CCTyper	CDS	1053101	1053391	97	-	.	ID=SEQF5339.1|LR134490.1_990_cas;Genome_ID=SEQF5339.1;Feature_type=CDS;Product=Cas Prediction : Csx16_3_CAS-I-III;coding_strand=-;E-value=3.7e-35;Score=116.8;Coverage_Seq=0.9278350515463918;Coverage_Hmm=0.989010989010989
SEQF5339.1|LR134490.1	CCTyper	CDS	1050751	1051911	387	-	.	ID=SEQF5339.1|LR134490.1_988_cas;Genome_ID=SEQF5339.1;Feature_type=CDS;Product=Cas Prediction : Csx1_8_CAS-III;coding_strand=-;E-value=4.8e-76;Score=251.9;Coverage_Seq=0.5968992248062015;Coverage_Hmm=0.9954337899543378
SEQF5339.1|LR134490.1	CCTyper	CDS	1064913	1066397	495	+	.	ID=SEQF5339.1|LR134490.1_1003_cas;Genome_ID=SEQF5339.1;Feature_type=CDS;Product=Cas Prediction : RecD_0_IVD;coding_strand=+;E-value=9.9e-21;Score=70.2;Coverage_Seq=0.692929292929293;Coverage_Hmm=0.40235910878112713