SEQF5478.1|JAANPT010000026.1	CCTyper	repeat_region	10105	10495	391	+	.	ID=SEQF5478.1|JAANPT010000026.1_1;Genome_ID=SEQF5478.1;Note=Predictor:CCtyper;Start:10105;End:10495;Consensus_Repeat:TCATCCCCACGCCCGTGGGGAACAC;Number_of_Repeats:7;Repeat_Length:25;Average_Spacer_Length:36;Repeat_Identity:90.5;Spacer_Identity:47.1;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: I-E;Cas_Subtype_Prediction:I-E;Subtype_Probability:0.82;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5478.1|JAANPT010000026.1	CCTyper	direct_repeat	10105	10129	25	+	.	ID=SEQF5478.1|JAANPT010000026.1_1_REPEAT1;Parent=SEQF5478.1|JAANPT010000026.1_1;Note=TCATCCCCACGTTTTTGGGGAACAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5478.1|JAANPT010000026.1	CCTyper	binding_site	10130	10165	36	+	.	ID=SEQF5478.1|JAANPT010000026.1_1_SPACER1;Parent=SEQF5478.1|JAANPT010000026.1_1;Note=GCTTCGACCTTCGGCAGTCTGGTTGGCTCTTCTGGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5478.1|JAANPT010000026.1	CCTyper	direct_repeat	10166	10190	25	+	.	ID=SEQF5478.1|JAANPT010000026.1_1_REPEAT2;Parent=SEQF5478.1|JAANPT010000026.1_1;Note=TCATCCCCACGCCCGTGGGGAACAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5478.1|JAANPT010000026.1	CCTyper	binding_site	10191	10226	36	+	.	ID=SEQF5478.1|JAANPT010000026.1_1_SPACER2;Parent=SEQF5478.1|JAANPT010000026.1_1;Note=TCGAGGGTGGTGTCCTCGCGGCGCTTACCGCGCGGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5478.1|JAANPT010000026.1	CCTyper	direct_repeat	10227	10251	25	+	.	ID=SEQF5478.1|JAANPT010000026.1_1_REPEAT3;Parent=SEQF5478.1|JAANPT010000026.1_1;Note=TCATCCCCACGCCCGTGGGGAACAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5478.1|JAANPT010000026.1	CCTyper	binding_site	10252	10287	36	+	.	ID=SEQF5478.1|JAANPT010000026.1_1_SPACER3;Parent=SEQF5478.1|JAANPT010000026.1_1;Note=TCGACCGCCTGGGCGGCGACTTCGGCCCGCGCCGGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5478.1|JAANPT010000026.1	CCTyper	direct_repeat	10288	10312	25	+	.	ID=SEQF5478.1|JAANPT010000026.1_1_REPEAT4;Parent=SEQF5478.1|JAANPT010000026.1_1;Note=TCATCCCCACGCCCGTGGGGAACAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5478.1|JAANPT010000026.1	CCTyper	binding_site	10313	10348	36	+	.	ID=SEQF5478.1|JAANPT010000026.1_1_SPACER4;Parent=SEQF5478.1|JAANPT010000026.1_1;Note=ATCTTCTGTATCAATCCCCCATTCCCACAACACGGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5478.1|JAANPT010000026.1	CCTyper	direct_repeat	10349	10373	25	+	.	ID=SEQF5478.1|JAANPT010000026.1_1_REPEAT5;Parent=SEQF5478.1|JAANPT010000026.1_1;Note=TCATCCCCACGCCCGTGGGGAACAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5478.1|JAANPT010000026.1	CCTyper	binding_site	10374	10409	36	+	.	ID=SEQF5478.1|JAANPT010000026.1_1_SPACER5;Parent=SEQF5478.1|JAANPT010000026.1_1;Note=TCGACCGCTACGCGATGAAGTACGACGTCCGCCGGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5478.1|JAANPT010000026.1	CCTyper	direct_repeat	10410	10434	25	+	.	ID=SEQF5478.1|JAANPT010000026.1_1_REPEAT6;Parent=SEQF5478.1|JAANPT010000026.1_1;Note=TCATCCCCACGCCCGTGGGGAACAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5478.1|JAANPT010000026.1	CCTyper	binding_site	10435	10470	36	+	.	ID=SEQF5478.1|JAANPT010000026.1_1_SPACER6;Parent=SEQF5478.1|JAANPT010000026.1_1;Note=CGCTTCTGCCACGGGTAGCTGTCGGCGATGGCCGGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5478.1|JAANPT010000026.1	CCTyper	direct_repeat	10471	10495	25	+	.	ID=SEQF5478.1|JAANPT010000026.1_1_REPEAT7;Parent=SEQF5478.1|JAANPT010000026.1_1;Note=TCATCCCCACGCCCGTGGGGAACAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5478.1|JAANPT010000030.1	CCTyper	repeat_region	4920	5436	517	+	.	ID=SEQF5478.1|JAANPT010000030.1_2;Genome_ID=SEQF5478.1;Note=Predictor:CCtyper;Start:4920;End:5436;Consensus_Repeat:CGGTTCATCCCCACACCCGTGGGGAACAC;Number_of_Repeats:9;Repeat_Length:29;Average_Spacer_Length:32;Repeat_Identity:91.0;Spacer_Identity:44.0;Spacer_Length_Sem:0.0;Trusted:True;Cas_Type_Prediction: I-E;Cas_Subtype_Prediction:I-E;Subtype_Probability:0.995;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5478.1|JAANPT010000030.1	CCTyper	direct_repeat	4920	4948	29	+	.	ID=SEQF5478.1|JAANPT010000030.1_2_REPEAT1;Parent=SEQF5478.1|JAANPT010000030.1_2;Note=GTATTCATCCCCACGTCCGTGGGGAACAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5478.1|JAANPT010000030.1	CCTyper	binding_site	4949	4980	32	+	.	ID=SEQF5478.1|JAANPT010000030.1_2_SPACER1;Parent=SEQF5478.1|JAANPT010000030.1_2;Note=GGGTAGACCAAGCGACCGGCTTTCTCGCCGCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5478.1|JAANPT010000030.1	CCTyper	direct_repeat	4981	5009	29	+	.	ID=SEQF5478.1|JAANPT010000030.1_2_REPEAT2;Parent=SEQF5478.1|JAANPT010000030.1_2;Note=CGGCTCATCCCCACTCCCGTGGGGAACAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5478.1|JAANPT010000030.1	CCTyper	binding_site	5010	5041	32	+	.	ID=SEQF5478.1|JAANPT010000030.1_2_SPACER2;Parent=SEQF5478.1|JAANPT010000030.1_2;Note=AGCCCTCGCAGCTCGCTCTTGGCCTGGGCGAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5478.1|JAANPT010000030.1	CCTyper	direct_repeat	5042	5070	29	+	.	ID=SEQF5478.1|JAANPT010000030.1_2_REPEAT3;Parent=SEQF5478.1|JAANPT010000030.1_2;Note=CGGTTCATCCCCACACCCGTGGGGAACAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5478.1|JAANPT010000030.1	CCTyper	binding_site	5071	5102	32	+	.	ID=SEQF5478.1|JAANPT010000030.1_2_SPACER3;Parent=SEQF5478.1|JAANPT010000030.1_2;Note=ACCTTGTGGGCGCCGGAGTGGATCAGGGTGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5478.1|JAANPT010000030.1	CCTyper	direct_repeat	5103	5131	29	+	.	ID=SEQF5478.1|JAANPT010000030.1_2_REPEAT4;Parent=SEQF5478.1|JAANPT010000030.1_2;Note=CGGTTCATCCCCACACCCGTGGGGAACAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5478.1|JAANPT010000030.1	CCTyper	binding_site	5132	5163	32	+	.	ID=SEQF5478.1|JAANPT010000030.1_2_SPACER4;Parent=SEQF5478.1|JAANPT010000030.1_2;Note=AAGCTCAACGCCGGCGCCACCGGCACCCCGGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5478.1|JAANPT010000030.1	CCTyper	direct_repeat	5164	5192	29	+	.	ID=SEQF5478.1|JAANPT010000030.1_2_REPEAT5;Parent=SEQF5478.1|JAANPT010000030.1_2;Note=CGGTTCATCCCCACACCCGTGGGGAACAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5478.1|JAANPT010000030.1	CCTyper	binding_site	5193	5224	32	+	.	ID=SEQF5478.1|JAANPT010000030.1_2_SPACER5;Parent=SEQF5478.1|JAANPT010000030.1_2;Note=TTGGTAGGTAGCGATGATCTTCTGTGCCTCGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5478.1|JAANPT010000030.1	CCTyper	direct_repeat	5225	5253	29	+	.	ID=SEQF5478.1|JAANPT010000030.1_2_REPEAT6;Parent=SEQF5478.1|JAANPT010000030.1_2;Note=CGGTTCATCCCCACACCCGTGGGGAACAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5478.1|JAANPT010000030.1	CCTyper	binding_site	5254	5285	32	+	.	ID=SEQF5478.1|JAANPT010000030.1_2_SPACER6;Parent=SEQF5478.1|JAANPT010000030.1_2;Note=GGCAAGCTCGCCGACCAGAAGACGGTCATCAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5478.1|JAANPT010000030.1	CCTyper	direct_repeat	5286	5314	29	+	.	ID=SEQF5478.1|JAANPT010000030.1_2_REPEAT7;Parent=SEQF5478.1|JAANPT010000030.1_2;Note=CGGTTCATCCCCACACCCGTGGGGAACAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5478.1|JAANPT010000030.1	CCTyper	binding_site	5315	5346	32	+	.	ID=SEQF5478.1|JAANPT010000030.1_2_SPACER7;Parent=SEQF5478.1|JAANPT010000030.1_2;Note=GTGTCCACGGTGACGGTAGTGCCGGCGGCGTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5478.1|JAANPT010000030.1	CCTyper	direct_repeat	5347	5375	29	+	.	ID=SEQF5478.1|JAANPT010000030.1_2_REPEAT8;Parent=SEQF5478.1|JAANPT010000030.1_2;Note=CGGTTCATCCCCACACCCGTGGGGAACAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5478.1|JAANPT010000030.1	CCTyper	binding_site	5376	5407	32	+	.	ID=SEQF5478.1|JAANPT010000030.1_2_SPACER8;Parent=SEQF5478.1|JAANPT010000030.1_2;Note=GGAACTGGCACCGTGCCCGTAACCGTGCGCGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5478.1|JAANPT010000030.1	CCTyper	direct_repeat	5408	5436	29	+	.	ID=SEQF5478.1|JAANPT010000030.1_2_REPEAT9;Parent=SEQF5478.1|JAANPT010000030.1_2;Note=CGGTTCATCCCCACACCCGTGGGGAACAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5478.1|JAANPT010000026.1	CCTyper	OPERON	10552	19225	8674	-	.	ID=SEQF5478.1|JAANPT010000026.1@2;Genome_ID=SEQF5478.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type I-E;Complete_Interference=100%;Complete_Adaptation=100%;Best_type=I-E;Best_score=25.0;Genes=Cas2_1_CAS-I-II-III-IV-V-VI,Cas1_0_IE,Cas6e_1_CAS-I-II-III-IV-V-VI,Cas5_0_IE,Cas7_1_CAS-I-E,Cse2gr11_7_CAS-I-E,Cas8e_1_CAS-I-E,Cas3_0_I;Positions=13,14,15,16,17,18,19,20;E-values=1.00e-37,4.10e-106,5.90e-54,1.40e-52,5.90e-127,1.00e-35,2.80e-101,9.00e-68;CoverageSeq=0.874,0.678,0.985,0.888,0.897,0.793,0.9,0.393;CoverageHMM=0.989,0.993,0.995,0.987,0.928,1.0,0.996,0.905;Strand_Interference=-1;Strand_Adaptation=-1
SEQF5478.1|JAANPT010000027.1	CCTyper	OPERON	17766	23231	5466	+	.	ID=SEQF5478.1|JAANPT010000027.1@1;Genome_ID=SEQF5478.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type IV-B;Complete_Interference=100%;Complete_Adaptation=NA;Best_type=IV-B;Best_score=11.0;Genes=CysH_0_IVB,Csf1_0_IV,Cas11_3_IV,Csf2_0_IV,Csf3_0_IV;Positions=19,23,24,25,26;E-values=1.30e-20,5.20e-22,2.00e-34,1.80e-55,9.40e-42;CoverageSeq=0.783,0.963,0.742,0.976,0.991;CoverageHMM=0.811,0.947,0.738,0.948,0.968;Strand_Interference=1;Strand_Adaptation=NA
SEQF5478.1|JAANPT010000027.1	CCTyper	CDS	21190	21654	155	+	.	ID=SEQF5478.1|JAANPT010000027.1_24_cas;Genome_ID=SEQF5478.1;Feature_type=CDS;Product=Cas Prediction : Cas11_3_IV;coding_strand=+;E-value=2.0000000000000003e-34;Score=117.1;Coverage_Seq=0.7419354838709677;Coverage_Hmm=0.7375
SEQF5478.1|JAANPT010000026.1	CCTyper	CDS	10860	12062	401	-	.	ID=SEQF5478.1|JAANPT010000026.1_14_cas;Genome_ID=SEQF5478.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_IE;coding_strand=-;E-value=4.1e-106;Score=352.5;Coverage_Seq=0.6783042394014963;Coverage_Hmm=0.9925650557620818
SEQF5478.1|JAANPT010000026.1	CCTyper	CDS	10552	10860	103	-	.	ID=SEQF5478.1|JAANPT010000026.1_13_cas;Genome_ID=SEQF5478.1;Feature_type=CDS;Product=Cas Prediction : Cas2_1_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1e-37;Score=126.5;Coverage_Seq=0.8737864077669902;Coverage_Hmm=0.989247311827957
SEQF5478.1|JAANPT010000026.1	CCTyper	CDS	16538	19225	896	-	.	ID=SEQF5478.1|JAANPT010000026.1_20_cas;Genome_ID=SEQF5478.1;Feature_type=CDS;Product=Cas Prediction : Cas3_0_I;coding_strand=-;E-value=9e-68;Score=227.3;Coverage_Seq=0.39285714285714285;Coverage_Hmm=0.9050279329608939
SEQF5478.1|JAANPT010000026.1	CCTyper	CDS	12648	13319	224	-	.	ID=SEQF5478.1|JAANPT010000026.1_16_cas;Genome_ID=SEQF5478.1;Feature_type=CDS;Product=Cas Prediction : Cas5_0_IE;coding_strand=-;E-value=1.4e-52;Score=177.1;Coverage_Seq=0.8883928571428571;Coverage_Hmm=0.9869565217391304
SEQF5478.1|JAANPT010000026.1	CCTyper	CDS	12062	12673	204	-	.	ID=SEQF5478.1|JAANPT010000026.1_15_cas;Genome_ID=SEQF5478.1;Feature_type=CDS;Product=Cas Prediction : Cas6e_1_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=5.9e-54;Score=181.7;Coverage_Seq=0.9852941176470589;Coverage_Hmm=0.9952830188679245
SEQF5478.1|JAANPT010000026.1	CCTyper	CDS	13322	14455	378	-	.	ID=SEQF5478.1|JAANPT010000026.1_17_cas;Genome_ID=SEQF5478.1;Feature_type=CDS;Product=Cas Prediction : Cas7_1_CAS-I-E;coding_strand=-;E-value=5.9e-127;Score=422.4;Coverage_Seq=0.8968253968253969;Coverage_Hmm=0.9275766016713092
SEQF5478.1|JAANPT010000026.1	CCTyper	CDS	14988	16541	518	-	.	ID=SEQF5478.1|JAANPT010000026.1_19_cas;Genome_ID=SEQF5478.1;Feature_type=CDS;Product=Cas Prediction : Cas8e_1_CAS-I-E;coding_strand=-;E-value=2.8000000000000002e-101;Score=338.3;Coverage_Seq=0.8996138996138996;Coverage_Hmm=0.9957805907172996
SEQF5478.1|JAANPT010000026.1	CCTyper	CDS	14470	14991	174	-	.	ID=SEQF5478.1|JAANPT010000026.1_18_cas;Genome_ID=SEQF5478.1;Feature_type=CDS;Product=Cas Prediction : Cse2gr11_7_CAS-I-E;coding_strand=-;E-value=1e-35;Score=121.6;Coverage_Seq=0.7931034482758621;Coverage_Hmm=1.0
SEQF5478.1|JAANPT010000027.1	CCTyper	CDS	20526	21176	217	+	.	ID=SEQF5478.1|JAANPT010000027.1_23_cas;Genome_ID=SEQF5478.1;Feature_type=CDS;Product=Cas Prediction : Csf1_0_IV;coding_strand=+;E-value=5.2e-22;Score=76.9;Coverage_Seq=0.9631336405529954;Coverage_Hmm=0.947136563876652
SEQF5478.1|JAANPT010000027.1	CCTyper	CDS	21651	22520	290	+	.	ID=SEQF5478.1|JAANPT010000027.1_25_cas;Genome_ID=SEQF5478.1;Feature_type=CDS;Product=Cas Prediction : Csf2_0_IV;coding_strand=+;E-value=1.7999999999999997e-55;Score=187.1;Coverage_Seq=0.9758620689655172;Coverage_Hmm=0.9483282674772037
SEQF5478.1|JAANPT010000027.1	CCTyper	CDS	22527	23231	235	+	.	ID=SEQF5478.1|JAANPT010000027.1_26_cas;Genome_ID=SEQF5478.1;Feature_type=CDS;Product=Cas Prediction : Csf3_0_IV;coding_strand=+;E-value=9.4e-42;Score=141.6;Coverage_Seq=0.9914893617021276;Coverage_Hmm=0.9684684684684685
SEQF5478.1|JAANPT010000027.1	CCTyper	CDS	17766	18608	281	-	.	ID=SEQF5478.1|JAANPT010000027.1_19_cas;Genome_ID=SEQF5478.1;Feature_type=CDS;Product=Cas Prediction : CysH_0_IVB;coding_strand=-;E-value=1.3e-20;Score=72.5;Coverage_Seq=0.7829181494661922;Coverage_Hmm=0.8112449799196787