SEQF5681.1|LR134002.1	CCTyper	repeat_region	1053199	1054032	834	+	.	ID=SEQF5681.1|LR134002.1_1;Genome_ID=SEQF5681.1;Note=Predictor:CCtyper;Start:1053199;End:1054032;Consensus_Repeat:GTTAGAAACCCCAGTCTCCTCGAGAGGGGACGGAAAC;Number_of_Repeats:12;Repeat_Length:37;Average_Spacer_Length:35.5;Repeat_Identity:79.1;Spacer_Identity:45.2;Spacer_Length_Sem:0.4;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.99;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5681.1|LR134002.1	CCTyper	direct_repeat	1053199	1053235	37	+	.	ID=SEQF5681.1|LR134002.1_1_REPEAT1;Parent=SEQF5681.1|LR134002.1_1;Note=GTTAGAAACCCCAGTCTCCTCGAGAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5681.1|LR134002.1	CCTyper	binding_site	1053236	1053270	35	+	.	ID=SEQF5681.1|LR134002.1_1_SPACER1;Parent=SEQF5681.1|LR134002.1_1;Note=TTTCATAGAGATATGTATCAGGTAACTGTTATTTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5681.1|LR134002.1	CCTyper	direct_repeat	1053271	1053307	37	+	.	ID=SEQF5681.1|LR134002.1_1_REPEAT2;Parent=SEQF5681.1|LR134002.1_1;Note=GTTAGAAACCCCAGTCTCCTCGAGAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5681.1|LR134002.1	CCTyper	binding_site	1053308	1053341	34	+	.	ID=SEQF5681.1|LR134002.1_1_SPACER2;Parent=SEQF5681.1|LR134002.1_1;Note=TTAGGCTTGTGATGTCTACATTTGCCCTTGGTCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5681.1|LR134002.1	CCTyper	direct_repeat	1053342	1053378	37	+	.	ID=SEQF5681.1|LR134002.1_1_REPEAT3;Parent=SEQF5681.1|LR134002.1_1;Note=GTTAGAAACCCCAGTCTCCTCGAGAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5681.1|LR134002.1	CCTyper	binding_site	1053379	1053415	37	+	.	ID=SEQF5681.1|LR134002.1_1_SPACER3;Parent=SEQF5681.1|LR134002.1_1;Note=TATCCAATAGCGTTTTTATGGCTTCTTCCGTCTGTGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5681.1|LR134002.1	CCTyper	direct_repeat	1053416	1053452	37	+	.	ID=SEQF5681.1|LR134002.1_1_REPEAT4;Parent=SEQF5681.1|LR134002.1_1;Note=GTTAGAAACCCCAGTCTCCTCGAGAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5681.1|LR134002.1	CCTyper	binding_site	1053453	1053488	36	+	.	ID=SEQF5681.1|LR134002.1_1_SPACER4;Parent=SEQF5681.1|LR134002.1_1;Note=ATTACCAACTTGTTCTGTATCGAGCTCGGCAATTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5681.1|LR134002.1	CCTyper	direct_repeat	1053489	1053525	37	+	.	ID=SEQF5681.1|LR134002.1_1_REPEAT5;Parent=SEQF5681.1|LR134002.1_1;Note=GTTAGAAACCCCAGTCTCCTCGAGAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5681.1|LR134002.1	CCTyper	binding_site	1053526	1053560	35	+	.	ID=SEQF5681.1|LR134002.1_1_SPACER5;Parent=SEQF5681.1|LR134002.1_1;Note=TTAGAGAAGTCTACGCCAGAGTTGTCTTCAGTTGC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5681.1|LR134002.1	CCTyper	direct_repeat	1053561	1053597	37	+	.	ID=SEQF5681.1|LR134002.1_1_REPEAT6;Parent=SEQF5681.1|LR134002.1_1;Note=GTTAGAAACCCCAATCACCTCGAGAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5681.1|LR134002.1	CCTyper	binding_site	1053598	1053633	36	+	.	ID=SEQF5681.1|LR134002.1_1_SPACER6;Parent=SEQF5681.1|LR134002.1_1;Note=TTGACATATATGTTTCATAAATGAAACGCTCTTTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5681.1|LR134002.1	CCTyper	direct_repeat	1053634	1053670	37	+	.	ID=SEQF5681.1|LR134002.1_1_REPEAT7;Parent=SEQF5681.1|LR134002.1_1;Note=GTTAGAAACCCCAATCACCTCGAGAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5681.1|LR134002.1	CCTyper	binding_site	1053671	1053705	35	+	.	ID=SEQF5681.1|LR134002.1_1_SPACER7;Parent=SEQF5681.1|LR134002.1_1;Note=CCTTTGGTATCATTAGGATTCTGACTGTAGCGTGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5681.1|LR134002.1	CCTyper	direct_repeat	1053706	1053742	37	+	.	ID=SEQF5681.1|LR134002.1_1_REPEAT8;Parent=SEQF5681.1|LR134002.1_1;Note=GTTAGAAACCCCAATCACCTCGAGAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5681.1|LR134002.1	CCTyper	binding_site	1053743	1053780	38	+	.	ID=SEQF5681.1|LR134002.1_1_SPACER8;Parent=SEQF5681.1|LR134002.1_1;Note=GAGAGTTTGAAAAACTCTTCATCTGATTTCAGCACACC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5681.1|LR134002.1	CCTyper	direct_repeat	1053781	1053817	37	+	.	ID=SEQF5681.1|LR134002.1_1_REPEAT9;Parent=SEQF5681.1|LR134002.1_1;Note=GTAATAACCCCCAGCCGCCTCGAGAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5681.1|LR134002.1	CCTyper	binding_site	1053818	1053851	34	+	.	ID=SEQF5681.1|LR134002.1_1_SPACER9;Parent=SEQF5681.1|LR134002.1_1;Note=GCTACTACAATCTCACGCTCAAAGCTGTATTCCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5681.1|LR134002.1	CCTyper	direct_repeat	1053852	1053888	37	+	.	ID=SEQF5681.1|LR134002.1_1_REPEAT10;Parent=SEQF5681.1|LR134002.1_1;Note=GTAAGACCCCCCATTCAGCTCGGGAGGGTACGGGAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5681.1|LR134002.1	CCTyper	binding_site	1053889	1053922	34	+	.	ID=SEQF5681.1|LR134002.1_1_SPACER10;Parent=SEQF5681.1|LR134002.1_1;Note=GTTTTAGATGCTTTTCATCAAAAGTGTTCTCAAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5681.1|LR134002.1	CCTyper	direct_repeat	1053923	1053959	37	+	.	ID=SEQF5681.1|LR134002.1_1_REPEAT11;Parent=SEQF5681.1|LR134002.1_1;Note=GTAATAACCCCCAGTTACCTCGGGAGGGTACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5681.1|LR134002.1	CCTyper	binding_site	1053960	1053995	36	+	.	ID=SEQF5681.1|LR134002.1_1_SPACER11;Parent=SEQF5681.1|LR134002.1_1;Note=TTTCAAGTGCCCCACTCCTAGATGGTTCATTAATGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5681.1|LR134002.1	CCTyper	direct_repeat	1053996	1054032	37	+	.	ID=SEQF5681.1|LR134002.1_1_REPEAT12;Parent=SEQF5681.1|LR134002.1_1;Note=GTAAGAACCACTAGTAGCCTCGGGAGGGGGCGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5681.1|LR134002.1	CCTyper	OPERON	1050143	1063529	13387	+	.	ID=SEQF5681.1|LR134002.1@27;Genome_ID=SEQF5681.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-A;Complete_Interference=100%;Complete_Adaptation=NA;Best_type=III-A;Best_score=18.0;Genes=Csm6_7_CAS-III,Cas1_0_CAS-I-II-III-IV-V-VI,Cas2_2_CAS-I-II-III-IV-V-VI,Cas6_0_CAS-I-II-III-IV-V-VI,Cas10_1_CAS-III,Csm2gr11_7_CAS-III-A,Csm3gr7_1_CAS-III-A-III-D,Csm4gr5_1_CAS-III-A,Csm5gr7_0_CAS-III-A-III-D,Csm6_1_CAS-III;Positions=1008,1010,1011,1014,1015,1016,1017,1018,1019,1020;E-values=2.00e-29,1.20e-79,8.50e-20,1.10e-26,1.20e-145,3.50e-19,1.70e-68,3.30e-40,4.00e-36,7.90e-39;CoverageSeq=0.969,0.949,0.624,0.755,0.769,0.686,0.84,0.977,0.768,0.749;CoverageHMM=0.676,0.994,0.848,0.876,0.911,0.945,0.972,0.975,0.77,0.875;Strand_Interference=1;Strand_Adaptation=NA
SEQF5681.1|LR134002.1	CCTyper	CDS	1056637	1058934	766	+	.	ID=SEQF5681.1|LR134002.1_1015_cas;Genome_ID=SEQF5681.1;Feature_type=CDS;Product=Cas Prediction : Cas10_1_CAS-III;coding_strand=+;E-value=1.2e-145;Score=483.6;Coverage_Seq=0.7689295039164491;Coverage_Hmm=0.9113149847094801
SEQF5681.1|LR134002.1	CCTyper	CDS	1051765	1052766	334	+	.	ID=SEQF5681.1|LR134002.1_1010_cas;Genome_ID=SEQF5681.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.2e-79;Score=264.7;Coverage_Seq=0.9491017964071856;Coverage_Hmm=0.9936908517350158
SEQF5681.1|LR134002.1	CCTyper	CDS	1052769	1053095	109	+	.	ID=SEQF5681.1|LR134002.1_1011_cas;Genome_ID=SEQF5681.1;Feature_type=CDS;Product=Cas Prediction : Cas2_2_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=8.5e-20;Score=67.8;Coverage_Seq=0.6238532110091743;Coverage_Hmm=0.8481012658227848
SEQF5681.1|LR134002.1	CCTyper	CDS	1055922	1056656	245	+	.	ID=SEQF5681.1|LR134002.1_1014_cas;Genome_ID=SEQF5681.1;Feature_type=CDS;Product=Cas Prediction : Cas6_0_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.1e-26;Score=91.5;Coverage_Seq=0.7551020408163265;Coverage_Hmm=0.8762886597938144
SEQF5681.1|LR134002.1	CCTyper	CDS	1058938	1059453	172	+	.	ID=SEQF5681.1|LR134002.1_1016_cas;Genome_ID=SEQF5681.1;Feature_type=CDS;Product=Cas Prediction : Csm2gr11_7_CAS-III-A;coding_strand=+;E-value=3.5e-19;Score=66.9;Coverage_Seq=0.686046511627907;Coverage_Hmm=0.9454545454545454
SEQF5681.1|LR134002.1	CCTyper	CDS	1059450	1060160	237	+	.	ID=SEQF5681.1|LR134002.1_1017_cas;Genome_ID=SEQF5681.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_1_CAS-III-A-III-D;coding_strand=+;E-value=1.6999999999999999e-68;Score=227.6;Coverage_Seq=0.8396624472573839;Coverage_Hmm=0.9720930232558139
SEQF5681.1|LR134002.1	CCTyper	CDS	1060172	1061080	303	+	.	ID=SEQF5681.1|LR134002.1_1018_cas;Genome_ID=SEQF5681.1;Feature_type=CDS;Product=Cas Prediction : Csm4gr5_1_CAS-III-A;coding_strand=+;E-value=3.3e-40;Score=135.3;Coverage_Seq=0.976897689768977;Coverage_Hmm=0.9746031746031746
SEQF5681.1|LR134002.1	CCTyper	CDS	1061077	1062216	380	+	.	ID=SEQF5681.1|LR134002.1_1019_cas;Genome_ID=SEQF5681.1;Feature_type=CDS;Product=Cas Prediction : Csm5gr7_0_CAS-III-A-III-D;coding_strand=+;E-value=4e-36;Score=122.0;Coverage_Seq=0.7684210526315789;Coverage_Hmm=0.7698630136986301
SEQF5681.1|LR134002.1	CCTyper	CDS	1062213	1063529	439	+	.	ID=SEQF5681.1|LR134002.1_1020_cas;Genome_ID=SEQF5681.1;Feature_type=CDS;Product=Cas Prediction : Csm6_1_CAS-III;coding_strand=+;E-value=7.9e-39;Score=130.6;Coverage_Seq=0.7494305239179955;Coverage_Hmm=0.875
SEQF5681.1|LR134002.1	CCTyper	CDS	1050143	1050904	254	+	.	ID=SEQF5681.1|LR134002.1_1008_cas;Genome_ID=SEQF5681.1;Feature_type=CDS;Product=Cas Prediction : Csm6_7_CAS-III;coding_strand=+;E-value=2.0000000000000002e-29;Score=99.6;Coverage_Seq=0.968503937007874;Coverage_Hmm=0.675603217158177