SEQF5689.1|RJMQ01000003.1	CCTyper	repeat_region	85896	87987	2092	+	.	ID=SEQF5689.1|RJMQ01000003.1_1;Genome_ID=SEQF5689.1;Note=Predictor:CCtyper;Start:85896;End:87987;Consensus_Repeat:CCCCAATCACCTCGAGAGGGGACGGAAAC;Number_of_Repeats:29;Repeat_Length:29.0;Average_Spacer_Length:44.7;Repeat_Identity:87.4;Spacer_Identity:48.0;Spacer_Length_Sem:0.3;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.998;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	85896	85924	29	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_REPEAT1;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=CCCCAGTCACCTCGAGAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	binding_site	85925	85966	42	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_SPACER1;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=TTAGCTGCTCGAAAGACTGGAAGAATTCTCTCAGGTAAGAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	85967	85995	29	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_REPEAT2;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=CCCCAGTCACCTCGAGAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	binding_site	85996	86038	43	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_SPACER2;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=CGCTTTCTGCACCAACATAAGACAACCAACGATATGTAAGAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	86039	86067	29	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_REPEAT3;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=CCCCAGTCACCTCGAGAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	binding_site	86068	86110	43	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_SPACER3;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=GGAAATAGGAATTTATTAACGAAAGATTCAAATTCTGTAAGCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	86111	86139	29	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_REPEAT4;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=ACCTAATCATCTTGAGAGGGTACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	binding_site	86140	86185	46	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_SPACER4;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=ATTTCTTTGCTTAGGTTTTGTAGTTCATTGGTCATATTGTAAGACA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	86186	86214	29	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_REPEAT5;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=CCCCAGTTACCTCGAAAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	binding_site	86215	86261	47	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_SPACER5;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=TATACAGCATCGTCGATACAGTCCGAACTCTTGAGATAGGTAAGACA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	86262	86290	29	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_REPEAT6;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=CCCCAGTCACCTCGGGAGGGGACGAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	binding_site	86291	86334	44	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_SPACER6;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=TTCTTAATGCTTGCTTTTTGGAACATTGCCTTTTCTGTAAGACA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	86335	86363	29	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_REPEAT7;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=CCCCAGTCACCTCGAGAGGGTACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	binding_site	86364	86408	45	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_SPACER7;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=GGGGTAAAAACAATGCAAAATGAACCAGCTTCATCACGTTAGAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	86409	86437	29	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_REPEAT8;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=CCCCAGTCACCTCGGGAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	binding_site	86438	86480	43	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_SPACER8;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=GCAACATTGTATAAATGTTTTCCAATGTGATTTCAGTAATACC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	86481	86509	29	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_REPEAT9;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=CCCCATTCACCCCGAGAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	binding_site	86510	86553	44	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_SPACER9;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=GCTTTCCTGTAATTGATACGAGCAACCCAATGGATGGTAATAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	86554	86582	29	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_REPEAT10;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=CCCCAGTTTCCTCGAGAGGGTACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	binding_site	86583	86626	44	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_SPACER10;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=TCAACAATCGTTGCAATAATTGCAAACAGAGTAATGGTAAGACC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	86627	86655	29	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_REPEAT11;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=CCTCATTCACCTCGAGAGGGTACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	binding_site	86656	86703	48	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_SPACER11;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=TTAAAGCCATTTTCAATCATTGTTTGAGTAATAGATGCTGTTAGAACC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	86704	86732	29	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_REPEAT12;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=CCCCATTCACCCCGCGAGGGGGCGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	binding_site	86733	86777	45	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_SPACER12;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=TTACTCTTGGTTGTCTTCATAGCTCTTCTTTTCTTAAGTAAGACC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	86778	86806	29	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_REPEAT13;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=CCCCATTCGCCTCGCGAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	binding_site	86807	86850	44	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_SPACER13;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=CGAAATTTCTTTCAACCTTTCAATAAACGGGATTCTGTAAGAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	86851	86879	29	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_REPEAT14;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=CTCCATTCACCTCGGGAGGGTACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	binding_site	86880	86922	43	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_SPACER14;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=CGTCAACGTTTGCTACTTGCTTACCATCTGAGCCGGTAAGACC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	86923	86951	29	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_REPEAT15;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=CCCCAATCACCTCGAGAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	binding_site	86952	86997	46	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_SPACER15;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=ATTATTAATAAATTCTTGAATAGTATCAAAACTGATAAGTAAGACC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	86998	87026	29	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_REPEAT16;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=CCCCAATCACCTCGAGAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	binding_site	87027	87074	48	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_SPACER16;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=ATGCCCTTGCCGATTTTGTCTGCTACATTTTCTGGAATTGTAAGACCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	87075	87103	29	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_REPEAT17;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=CCCCAATCACCTCGAGAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	binding_site	87104	87148	45	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_SPACER17;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=TGCGTTGCATTGCGTTGTAATGTAATGCGTTTGTGTGTAAGACCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	87149	87177	29	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_REPEAT18;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=CCCCAATCACCTCGAGAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	binding_site	87178	87220	43	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_SPACER18;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=GAAACAGCAGATTTAAGACCTGGTGTAAATTTACGGTAAGACC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	87221	87249	29	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_REPEAT19;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=CCCCAATCACCTCGAGAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	binding_site	87250	87293	44	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_SPACER19;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=GAAATCAATGTGATTCTAATCATGGTTGTCTTGTCAGTAAGACC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	87294	87322	29	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_REPEAT20;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=CCCCAATCACCTCGAGAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	binding_site	87323	87367	45	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_SPACER20;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=ATACAAATATAAAACCTAAAATCAACTTAATCTACAAGTAAGACC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	87368	87396	29	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_REPEAT21;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=CCCAAATCACCTCGAGAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	binding_site	87397	87443	47	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_SPACER21;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=GTTAAGTAGTGTTTGATCGTTAATACCTGATAAATCAAAGTAAGAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	87444	87472	29	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_REPEAT22;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=CCCCAGTCACCTCGGGAGGGTACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	binding_site	87473	87514	42	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_SPACER22;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=AAATCCGCCCACGGTCATTAAAAGCTGGTCTCTGGTAAGAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	87515	87543	29	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_REPEAT23;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=CCCCATTCACCTCGAGAGGGTACAGAAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	binding_site	87544	87591	48	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_SPACER23;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=GAAATTAGATCTGACCATGTTTAAATACCTCCCACATATCTGTAAGAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	87592	87620	29	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_REPEAT24;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=CCCCATTCACCTCGAGAGGGTACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	binding_site	87621	87663	43	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_SPACER24;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=TTGGCTCCGTCGATTGCTTGGTCTACGGTCTTAAAGTAAGAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	87664	87692	29	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_REPEAT25;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=CCCCAGTCACCTCGGGAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	binding_site	87693	87738	46	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_SPACER25;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=GTTGGATAACTTGAAAGAGATTAACAACATCATCATGTTAGAAACC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	87739	87767	29	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_REPEAT26;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=CCAGTTTCCTCTCGGGAGGGTACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	binding_site	87768	87811	44	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_SPACER26;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=CTTCTGCCTTGGTACGATACCCTCGCTTGCTTTTCTGTTAGAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	87812	87840	29	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_REPEAT27;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=CCCCATTCACCTCGAGAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	binding_site	87841	87884	44	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_SPACER27;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=ACAGTACCAGTTATCTGATTTCTCAAAGGTCAGAGCGTAAGAAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	87885	87913	29	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_REPEAT28;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=CCCCAATCACCTCGCGAGGGTACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	binding_site	87914	87958	45	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_SPACER28;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=ACAACTCCATTAGTTCGTTTTGTACGCCACACATTTTGTTAGAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	87959	87987	29	+	.	ID=SEQF5689.1|RJMQ01000003.1_1_REPEAT29;Parent=SEQF5689.1|RJMQ01000003.1_1;Note=CCCCAGTCTACTCGAGAGGGTACGGGAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	repeat_region	88472	88644	173	+	.	ID=SEQF5689.1|RJMQ01000003.1-2_5;Genome_ID=SEQF5689.1;Note=Predictor:CCtyper;Start:88472;End:88644;Consensus_Repeat:TCACCTCGGGAGGGTACGGAAAC;Number_of_Repeats:3;Repeat_Length:26.0;Average_Spacer_Length:47.5;Repeat_Identity:75.4;Spacer_Identity:48.4;Spacer_Length_Sem:2.5;Trusted:True;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.264;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	88472	88497	26	+	.	ID=SEQF5689.1|RJMQ01000003.1-2_5_REPEAT1;Parent=SEQF5689.1|RJMQ01000003.1-2_5;Note=CAGTCACCTCGAGAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	binding_site	88498	88547	50	+	.	ID=SEQF5689.1|RJMQ01000003.1-2_5_SPACER1;Parent=SEQF5689.1|RJMQ01000003.1-2_5;Note=CGAAATTTCTTTCAACCTTTCAATAAACGGGATTCTGTAAGAACCTCCAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	88548	88570	23	+	.	ID=SEQF5689.1|RJMQ01000003.1-2_5_REPEAT2;Parent=SEQF5689.1|RJMQ01000003.1-2_5;Note=TCACCTCGGGAGGGTACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	binding_site	88571	88615	45	+	.	ID=SEQF5689.1|RJMQ01000003.1-2_5_SPACER2;Parent=SEQF5689.1|RJMQ01000003.1-2_5;Note=ATAATGTCGTCTTCCTCATCCTTAGAATTACTCTTTGGTAATAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	88616	88644	29	+	.	ID=SEQF5689.1|RJMQ01000003.1-2_5_REPEAT3;Parent=SEQF5689.1|RJMQ01000003.1-2_5;Note=CCCCTATCACCTCGAGAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	repeat_region	88910	89083	174	+	.	ID=SEQF5689.1|RJMQ01000003.1-2_6;Genome_ID=SEQF5689.1;Note=Predictor:CCtyper;Start:88910;End:89083;Consensus_Repeat:AGAATCCCCATTCACCTCGGGAGGGGACGGAAAC;Number_of_Repeats:3;Repeat_Length:29.7;Average_Spacer_Length:42.5;Repeat_Identity:70.0;Spacer_Identity:44.1;Spacer_Length_Sem:2.5;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.956;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	88910	88935	26	+	.	ID=SEQF5689.1|RJMQ01000003.1-2_6_REPEAT1;Parent=SEQF5689.1|RJMQ01000003.1-2_6;Note=CAGTCACCTTGGGAGGGTACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	binding_site	88936	88975	40	+	.	ID=SEQF5689.1|RJMQ01000003.1-2_6_SPACER1;Parent=SEQF5689.1|RJMQ01000003.1-2_6;Note=ATCTTGGTTATCCTTTCGGTTACGATTAAGTGAGCTGGTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	88976	89009	34	+	.	ID=SEQF5689.1|RJMQ01000003.1-2_6_REPEAT2;Parent=SEQF5689.1|RJMQ01000003.1-2_6;Note=AGAATCCCCATTCACCTCGGGAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	binding_site	89010	89054	45	+	.	ID=SEQF5689.1|RJMQ01000003.1-2_6_SPACER2;Parent=SEQF5689.1|RJMQ01000003.1-2_6;Note=ATACCAGGACGCTGTACTTTGAATGGACGGCGCATATTGTAAGCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	direct_repeat	89055	89083	29	+	.	ID=SEQF5689.1|RJMQ01000003.1-2_6_REPEAT3;Parent=SEQF5689.1|RJMQ01000003.1-2_6;Note=CCCCAGTCACCTCGCGAGGGTACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5689.1|RJMQ01000003.1	CCTyper	OPERON	82840	97093	14254	+	.	ID=SEQF5689.1|RJMQ01000003.1@3;Genome_ID=SEQF5689.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-A;Complete_Interference=100%;Complete_Adaptation=NA;Best_type=III-A;Best_score=18.0;Genes=Csm6_7_CAS-III,Cas1_0_CAS-I-II-III-IV-V-VI,Cas2_2_CAS-I-II-III-IV-V-VI,Cas6_0_CAS-I-II-III-IV-V-VI,Cas10_1_CAS-III,Csm2gr11_7_CAS-III-A,Csm3gr7_1_CAS-III-A-III-D,Csm4gr5_1_CAS-III-A,Csm5gr7_0_CAS-III-A-III-D,Csm6_1_CAS-III;Positions=86,88,89,90,91,92,93,94,95,96;E-values=1.10e-28,1.40e-80,8.70e-20,1.20e-26,2.10e-145,1.30e-19,2.30e-68,5.40e-40,4.70e-36,2.00e-43;CoverageSeq=0.969,0.949,0.624,0.755,0.777,0.68,0.84,0.977,0.736,0.752;CoverageHMM=0.676,0.994,0.848,0.876,0.907,0.945,0.972,0.975,0.734,0.886;Strand_Interference=1;Strand_Adaptation=NA
SEQF5689.1|RJMQ01000003.1	CCTyper	CDS	90212	92509	766	+	.	ID=SEQF5689.1|RJMQ01000003.1_91_cas;Genome_ID=SEQF5689.1;Feature_type=CDS;Product=Cas Prediction : Cas10_1_CAS-III;coding_strand=+;E-value=2.1000000000000003e-145;Score=482.9;Coverage_Seq=0.7767624020887729;Coverage_Hmm=0.9067278287461774
SEQF5689.1|RJMQ01000003.1	CCTyper	CDS	84454	85455	334	+	.	ID=SEQF5689.1|RJMQ01000003.1_88_cas;Genome_ID=SEQF5689.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.4000000000000001e-80;Score=267.8;Coverage_Seq=0.9491017964071856;Coverage_Hmm=0.9936908517350158
SEQF5689.1|RJMQ01000003.1	CCTyper	CDS	85458	85784	109	+	.	ID=SEQF5689.1|RJMQ01000003.1_89_cas;Genome_ID=SEQF5689.1;Feature_type=CDS;Product=Cas Prediction : Cas2_2_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=8.7e-20;Score=67.8;Coverage_Seq=0.6238532110091743;Coverage_Hmm=0.8481012658227848
SEQF5689.1|RJMQ01000003.1	CCTyper	CDS	89497	90231	245	+	.	ID=SEQF5689.1|RJMQ01000003.1_90_cas;Genome_ID=SEQF5689.1;Feature_type=CDS;Product=Cas Prediction : Cas6_0_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.2e-26;Score=91.3;Coverage_Seq=0.7551020408163265;Coverage_Hmm=0.8762886597938144
SEQF5689.1|RJMQ01000003.1	CCTyper	CDS	92514	93020	169	+	.	ID=SEQF5689.1|RJMQ01000003.1_92_cas;Genome_ID=SEQF5689.1;Feature_type=CDS;Product=Cas Prediction : Csm2gr11_7_CAS-III-A;coding_strand=+;E-value=1.3e-19;Score=68.3;Coverage_Seq=0.6804733727810651;Coverage_Hmm=0.9454545454545454
SEQF5689.1|RJMQ01000003.1	CCTyper	CDS	93017	93727	237	+	.	ID=SEQF5689.1|RJMQ01000003.1_93_cas;Genome_ID=SEQF5689.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_1_CAS-III-A-III-D;coding_strand=+;E-value=2.3e-68;Score=227.3;Coverage_Seq=0.8396624472573839;Coverage_Hmm=0.9720930232558139
SEQF5689.1|RJMQ01000003.1	CCTyper	CDS	93739	94647	303	+	.	ID=SEQF5689.1|RJMQ01000003.1_94_cas;Genome_ID=SEQF5689.1;Feature_type=CDS;Product=Cas Prediction : Csm4gr5_1_CAS-III-A;coding_strand=+;E-value=5.4e-40;Score=134.6;Coverage_Seq=0.976897689768977;Coverage_Hmm=0.9746031746031746
SEQF5689.1|RJMQ01000003.1	CCTyper	CDS	94644	95780	379	+	.	ID=SEQF5689.1|RJMQ01000003.1_95_cas;Genome_ID=SEQF5689.1;Feature_type=CDS;Product=Cas Prediction : Csm5gr7_0_CAS-III-A-III-D;coding_strand=+;E-value=4.7e-36;Score=121.8;Coverage_Seq=0.7361477572559367;Coverage_Hmm=0.7342465753424657
SEQF5689.1|RJMQ01000003.1	CCTyper	CDS	95777	97093	439	+	.	ID=SEQF5689.1|RJMQ01000003.1_96_cas;Genome_ID=SEQF5689.1;Feature_type=CDS;Product=Cas Prediction : Csm6_1_CAS-III;coding_strand=+;E-value=2e-43;Score=145.8;Coverage_Seq=0.7517084282460137;Coverage_Hmm=0.8861111111111111
SEQF5689.1|RJMQ01000003.1	CCTyper	CDS	82840	83601	254	+	.	ID=SEQF5689.1|RJMQ01000003.1_86_cas;Genome_ID=SEQF5689.1;Feature_type=CDS;Product=Cas Prediction : Csm6_7_CAS-III;coding_strand=+;E-value=1.1000000000000002e-28;Score=97.2;Coverage_Seq=0.968503937007874;Coverage_Hmm=0.675603217158177