SEQF5699.1|GL878559.1	CCTyper	repeat_region	536349	536677	329	+	.	ID=SEQF5699.1|GL878559.1_1;Genome_ID=SEQF5699.1;Note=Predictor:CCtyper;Start:536349;End:536677;Consensus_Repeat:AGAAACCCCAATCACCTCGAGAGGGGACGGAAAC;Number_of_Repeats:5;Repeat_Length:34.0;Average_Spacer_Length:39.8;Repeat_Identity:85.3;Spacer_Identity:44.2;Spacer_Length_Sem:0.6;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.998;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5699.1|GL878559.1	CCTyper	direct_repeat	536349	536382	34	+	.	ID=SEQF5699.1|GL878559.1_1_REPEAT1;Parent=SEQF5699.1|GL878559.1_1;Note=AGAAATCCTAGTCACCTCGGGAGGGTACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5699.1|GL878559.1	CCTyper	binding_site	536383	536420	38	+	.	ID=SEQF5699.1|GL878559.1_1_SPACER1;Parent=SEQF5699.1|GL878559.1_1;Note=GGGTGCTCTTTAAAGTAATCATTAAATGTAGTTGTGTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5699.1|GL878559.1	CCTyper	direct_repeat	536421	536454	34	+	.	ID=SEQF5699.1|GL878559.1_1_REPEAT2;Parent=SEQF5699.1|GL878559.1_1;Note=AGAACCCCCAATCACCTCGAGAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5699.1|GL878559.1	CCTyper	binding_site	536455	536495	41	+	.	ID=SEQF5699.1|GL878559.1_1_SPACER2;Parent=SEQF5699.1|GL878559.1_1;Note=TATCGAAACAGACCGTGACATCTTGAAGAAGACAACAGGTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5699.1|GL878559.1	CCTyper	direct_repeat	536496	536529	34	+	.	ID=SEQF5699.1|GL878559.1_1_REPEAT3;Parent=SEQF5699.1|GL878559.1_1;Note=AGAAACCCCAATCACCTCGAGAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5699.1|GL878559.1	CCTyper	binding_site	536530	536569	40	+	.	ID=SEQF5699.1|GL878559.1_1_SPACER3;Parent=SEQF5699.1|GL878559.1_1;Note=TAGTTTACCGTCTTGAGCTTTGATTGTGACTGTGCCGGTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5699.1|GL878559.1	CCTyper	direct_repeat	536570	536603	34	+	.	ID=SEQF5699.1|GL878559.1_1_REPEAT4;Parent=SEQF5699.1|GL878559.1_1;Note=AGAAACCCCAATCACCTCGAGAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5699.1|GL878559.1	CCTyper	binding_site	536604	536643	40	+	.	ID=SEQF5699.1|GL878559.1_1_SPACER4;Parent=SEQF5699.1|GL878559.1_1;Note=TAATGATGACTTGACCGTCATAGTTCATCAAACCAAGGTA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5699.1|GL878559.1	CCTyper	direct_repeat	536644	536677	34	+	.	ID=SEQF5699.1|GL878559.1_1_REPEAT5;Parent=SEQF5699.1|GL878559.1_1;Note=AGAAACCCCAGTCACCTCGAGAGGGTACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5699.1|GL878559.1	CCTyper	repeat_region	537920	538399	480	+	.	ID=SEQF5699.1|GL878559.1-8_5;Genome_ID=SEQF5699.1;Note=Predictor:CCtyper;Start:537920;End:538399;Consensus_Repeat:GTAAGACCTCCCATTCACCTCGAGAGGGGGCGGAAAC;Number_of_Repeats:7;Repeat_Length:33.1;Average_Spacer_Length:41.3;Repeat_Identity:65.5;Spacer_Identity:40.7;Spacer_Length_Sem:2.1;Trusted:True;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:III-D;Subtype_Probability:0.43;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5699.1|GL878559.1	CCTyper	direct_repeat	537920	537953	34	+	.	ID=SEQF5699.1|GL878559.1-8_5_REPEAT1;Parent=SEQF5699.1|GL878559.1-8_5;Note=AGAATCCCCATTCACTTCGAGAGGGTACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5699.1|GL878559.1	CCTyper	binding_site	537954	537991	38	+	.	ID=SEQF5699.1|GL878559.1-8_5_SPACER1;Parent=SEQF5699.1|GL878559.1-8_5;Note=TTCTTCTCCAAAATAACTATCTTTTAGTTTCAAGCGAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5699.1|GL878559.1	CCTyper	direct_repeat	537992	538028	37	+	.	ID=SEQF5699.1|GL878559.1-8_5_REPEAT2;Parent=SEQF5699.1|GL878559.1-8_5;Note=GTAAGACCCCCCATTCACCTCGGGAGGGGACGAAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5699.1|GL878559.1	CCTyper	binding_site	538029	538065	37	+	.	ID=SEQF5699.1|GL878559.1-8_5_SPACER2;Parent=SEQF5699.1|GL878559.1-8_5;Note=GGAAATTTTGTCCTTCCTTTAGGTCTTCCTGGCTTTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5699.1|GL878559.1	CCTyper	direct_repeat	538066	538102	37	+	.	ID=SEQF5699.1|GL878559.1-8_5_REPEAT3;Parent=SEQF5699.1|GL878559.1-8_5;Note=GTAAGACCTCCCATTCACCTCGAGAGGGGGCGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5699.1|GL878559.1	CCTyper	binding_site	538103	538152	50	+	.	ID=SEQF5699.1|GL878559.1-8_5_SPACER3;Parent=SEQF5699.1|GL878559.1-8_5;Note=TTGCTTTAATTTGGAGTTAGATGTGAGCGCTTCAGTAAGAACCCCCAGTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5699.1|GL878559.1	CCTyper	direct_repeat	538153	538173	21	+	.	ID=SEQF5699.1|GL878559.1-8_5_REPEAT4;Parent=SEQF5699.1|GL878559.1-8_5;Note=ACCTCGGGAGGGTACTGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5699.1|GL878559.1	CCTyper	binding_site	538174	538212	39	+	.	ID=SEQF5699.1|GL878559.1-8_5_SPACER4;Parent=SEQF5699.1|GL878559.1-8_5;Note=TATGAAATGTTACCTACTTTTACTTCGGTAGTATATTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5699.1|GL878559.1	CCTyper	direct_repeat	538213	538249	37	+	.	ID=SEQF5699.1|GL878559.1-8_5_REPEAT5;Parent=SEQF5699.1|GL878559.1-8_5;Note=GTAAGAACCCCCATTCACCTCGAGAGGGAACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5699.1|GL878559.1	CCTyper	binding_site	538250	538288	39	+	.	ID=SEQF5699.1|GL878559.1-8_5_SPACER5;Parent=SEQF5699.1|GL878559.1-8_5;Note=TAGACGGCATTAGCGTGTATAAGAACAGCAGCAAGATAG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5699.1|GL878559.1	CCTyper	direct_repeat	538289	538325	37	+	.	ID=SEQF5699.1|GL878559.1-8_5_REPEAT6;Parent=SEQF5699.1|GL878559.1-8_5;Note=GTAAGACCCCCCAGTCACCTCGAGAGGGGGCGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5699.1|GL878559.1	CCTyper	binding_site	538326	538370	45	+	.	ID=SEQF5699.1|GL878559.1-8_5_SPACER6;Parent=SEQF5699.1|GL878559.1-8_5;Note=TCCGCTAGACCAATGATTTTTAAATACAATGTAATCAGTAATTCA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5699.1|GL878559.1	CCTyper	direct_repeat	538371	538399	29	+	.	ID=SEQF5699.1|GL878559.1-8_5_REPEAT7;Parent=SEQF5699.1|GL878559.1-8_5;Note=CCCCAGTTACCTCGAAAGGGGACGGAAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5699.1|GL878559.1	CCTyper	OPERON	532527	546527	14001	+	.	ID=SEQF5699.1|GL878559.1@13;Genome_ID=SEQF5699.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-A;Complete_Interference=100%;Complete_Adaptation=NA;Best_type=III-A;Best_score=18.0;Genes=Csm6_7_CAS-III,Cas1_0_CAS-I-II-III-IV-V-VI,Cas2_2_CAS-I-II-III-IV-V-VI,Cas6_0_CAS-I-II-III-IV-V-VI,Cas10_1_CAS-III,Csm2gr11_7_CAS-III-A,Csm3gr7_1_CAS-III-A-III-D,Csm4gr5_1_CAS-III-A,Csm4gr5_1_CAS-III-A,Csm5gr7_0_CAS-III-A-III-D,Csm6_3_CAS-III;Positions=536,538,540,541,542,543,544,545,546,547,548;E-values=2.50e-29,4.00e-71,1.00e-19,1.30e-26,1.10e-146,3.20e-19,9.90e-68,7.20e-13,1.70e-21,1.10e-35,1.30e-41;CoverageSeq=0.969,0.981,0.727,0.755,0.816,0.682,0.84,0.951,0.941,0.734,0.769;CoverageHMM=0.676,0.811,0.797,0.876,0.969,0.955,0.972,0.308,0.365,0.732,0.974;Strand_Interference=1;Strand_Adaptation=NA
SEQF5699.1|GL878559.1	CCTyper	CDS	539536	541833	766	+	.	ID=SEQF5699.1|GL878559.1_542_cas;Genome_ID=SEQF5699.1;Feature_type=CDS;Product=Cas Prediction : Cas10_1_CAS-III;coding_strand=+;E-value=1.1e-146;Score=487.2;Coverage_Seq=0.8159268929503917;Coverage_Hmm=0.9694189602446484
SEQF5699.1|GL878559.1	CCTyper	CDS	534150	534938	263	+	.	ID=SEQF5699.1|GL878559.1_538_cas;Genome_ID=SEQF5699.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=4e-71;Score=236.7;Coverage_Seq=0.9809885931558935;Coverage_Hmm=0.8107255520504731
SEQF5699.1|GL878559.1	CCTyper	CDS	535155	535418	88	+	.	ID=SEQF5699.1|GL878559.1_540_cas;Genome_ID=SEQF5699.1;Feature_type=CDS;Product=Cas Prediction : Cas2_2_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1e-19;Score=67.6;Coverage_Seq=0.7272727272727273;Coverage_Hmm=0.7974683544303798
SEQF5699.1|GL878559.1	CCTyper	CDS	538821	539555	245	+	.	ID=SEQF5699.1|GL878559.1_541_cas;Genome_ID=SEQF5699.1;Feature_type=CDS;Product=Cas Prediction : Cas6_0_CAS-I-II-III-IV-V-VI;coding_strand=+;E-value=1.3e-26;Score=91.3;Coverage_Seq=0.7551020408163265;Coverage_Hmm=0.8762886597938144
SEQF5699.1|GL878559.1	CCTyper	CDS	541835	542344	170	+	.	ID=SEQF5699.1|GL878559.1_543_cas;Genome_ID=SEQF5699.1;Feature_type=CDS;Product=Cas Prediction : Csm2gr11_7_CAS-III-A;coding_strand=+;E-value=3.2e-19;Score=67.0;Coverage_Seq=0.6823529411764706;Coverage_Hmm=0.9545454545454546
SEQF5699.1|GL878559.1	CCTyper	CDS	542341	543051	237	+	.	ID=SEQF5699.1|GL878559.1_544_cas;Genome_ID=SEQF5699.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_1_CAS-III-A-III-D;coding_strand=+;E-value=9.9e-68;Score=225.2;Coverage_Seq=0.8396624472573839;Coverage_Hmm=0.9720930232558139
SEQF5699.1|GL878559.1	CCTyper	CDS	543063	543371	103	+	.	ID=SEQF5699.1|GL878559.1_545_cas;Genome_ID=SEQF5699.1;Feature_type=CDS;Product=Cas Prediction : Csm4gr5_1_CAS-III-A;coding_strand=+;E-value=7.2e-13;Score=45.5;Coverage_Seq=0.9514563106796117;Coverage_Hmm=0.30793650793650795
SEQF5699.1|GL878559.1	CCTyper	CDS	543566	543970	135	+	.	ID=SEQF5699.1|GL878559.1_546_cas;Genome_ID=SEQF5699.1;Feature_type=CDS;Product=Cas Prediction : Csm4gr5_1_CAS-III-A;coding_strand=+;E-value=1.7e-21;Score=73.8;Coverage_Seq=0.9407407407407408;Coverage_Hmm=0.36507936507936506
SEQF5699.1|GL878559.1	CCTyper	CDS	543967	545103	379	+	.	ID=SEQF5699.1|GL878559.1_547_cas;Genome_ID=SEQF5699.1;Feature_type=CDS;Product=Cas Prediction : Csm5gr7_0_CAS-III-A-III-D;coding_strand=+;E-value=1.1e-35;Score=120.7;Coverage_Seq=0.7335092348284961;Coverage_Hmm=0.7315068493150685
SEQF5699.1|GL878559.1	CCTyper	CDS	545100	546527	476	+	.	ID=SEQF5699.1|GL878559.1_548_cas;Genome_ID=SEQF5699.1;Feature_type=CDS;Product=Cas Prediction : Csm6_3_CAS-III;coding_strand=+;E-value=1.3e-41;Score=139.8;Coverage_Seq=0.7689075630252101;Coverage_Hmm=0.9738219895287958
SEQF5699.1|GL878559.1	CCTyper	CDS	532527	533288	254	+	.	ID=SEQF5699.1|GL878559.1_536_cas;Genome_ID=SEQF5699.1;Feature_type=CDS;Product=Cas Prediction : Csm6_7_CAS-III;coding_strand=+;E-value=2.5e-29;Score=99.3;Coverage_Seq=0.968503937007874;Coverage_Hmm=0.675603217158177