SEQF5706.1|RJNL01000002.1	CCTyper	repeat_region	330218	330397	180	+	.	ID=SEQF5706.1|RJNL01000002.1-6_1;Genome_ID=SEQF5706.1;Note=Predictor:CCtyper;Start:330218;End:330397;Consensus_Repeat:GTTTCCGTCCCCTCTCGGGGTGAATGGGGGTTCTTAC;Number_of_Repeats:3;Repeat_Length:36.0;Average_Spacer_Length:36.0;Repeat_Identity:70.3;Spacer_Identity:44.0;Spacer_Length_Sem:1.0;Trusted:True;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.528;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5706.1|RJNL01000002.1	CCTyper	direct_repeat	330218	330254	37	+	.	ID=SEQF5706.1|RJNL01000002.1-6_1_REPEAT1;Parent=SEQF5706.1|RJNL01000002.1-6_1;Note=GTTTCCGTCCCCTCTCGGGGTGAATGGGGGTTCTTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5706.1|RJNL01000002.1	CCTyper	binding_site	330255	330291	37	+	.	ID=SEQF5706.1|RJNL01000002.1-6_1_SPACER1;Parent=SEQF5706.1|RJNL01000002.1-6_1;Note=CTCAATCAGTAGTTGGGTATGACCTGAAGCCAGATAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5706.1|RJNL01000002.1	CCTyper	direct_repeat	330292	330328	37	+	.	ID=SEQF5706.1|RJNL01000002.1-6_1_REPEAT2;Parent=SEQF5706.1|RJNL01000002.1-6_1;Note=GTTTCCGTTCCCTCTCGAGGTGACTGGGGTGTCTTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5706.1|RJNL01000002.1	CCTyper	binding_site	330329	330363	35	+	.	ID=SEQF5706.1|RJNL01000002.1-6_1_SPACER2;Parent=SEQF5706.1|RJNL01000002.1-6_1;Note=GATTGATGAAAAGATACATAACGCACAAGGTAATC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5706.1|RJNL01000002.1	CCTyper	direct_repeat	330364	330397	34	+	.	ID=SEQF5706.1|RJNL01000002.1-6_1_REPEAT3;Parent=SEQF5706.1|RJNL01000002.1-6_1;Note=GTTTCCGTACCCTCGCGAGGAGACTGAGGTTTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5706.1|RJNL01000002.1	CCTyper	repeat_region	331531	331787	257	+	.	ID=SEQF5706.1|RJNL01000002.1-6_4;Genome_ID=SEQF5706.1;Note=Predictor:CCtyper;Start:331531;End:331787;Consensus_Repeat:GTTTCCGTCCCCTCTCGAGGTAACTGGGGTTTCTTAC;Number_of_Repeats:4;Repeat_Length:36.2;Average_Spacer_Length:37.3;Repeat_Identity:80.7;Spacer_Identity:44.6;Spacer_Length_Sem:1.5;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.999;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5706.1|RJNL01000002.1	CCTyper	direct_repeat	331531	331567	37	+	.	ID=SEQF5706.1|RJNL01000002.1-6_4_REPEAT1;Parent=SEQF5706.1|RJNL01000002.1-6_4;Note=GTTTCCGCCCCCTCCCGAGGTGACTGGGGGGTCTTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5706.1|RJNL01000002.1	CCTyper	binding_site	331568	331604	37	+	.	ID=SEQF5706.1|RJNL01000002.1-6_4_SPACER1;Parent=SEQF5706.1|RJNL01000002.1-6_4;Note=GTTTTGATAAATGAAGAATAATCAATTGTTAAGTCCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5706.1|RJNL01000002.1	CCTyper	direct_repeat	331605	331638	34	+	.	ID=SEQF5706.1|RJNL01000002.1-6_4_REPEAT2;Parent=SEQF5706.1|RJNL01000002.1-6_4;Note=GTTTCCGTCCCCTCCCGAGGTAACTGGAGTTTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5706.1|RJNL01000002.1	CCTyper	binding_site	331639	331678	40	+	.	ID=SEQF5706.1|RJNL01000002.1-6_4_SPACER2;Parent=SEQF5706.1|RJNL01000002.1-6_4;Note=TACTTGCTATTGGAGTTTTTGTATACAGTTTGTTGTTTTT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5706.1|RJNL01000002.1	CCTyper	direct_repeat	331679	331715	37	+	.	ID=SEQF5706.1|RJNL01000002.1-6_4_REPEAT3;Parent=SEQF5706.1|RJNL01000002.1-6_4;Note=GTTTCCGTCCCCTCTCGAGGTAACTGGGGTTTCTTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5706.1|RJNL01000002.1	CCTyper	binding_site	331716	331750	35	+	.	ID=SEQF5706.1|RJNL01000002.1-6_4_SPACER3;Parent=SEQF5706.1|RJNL01000002.1-6_4;Note=AAACTTCATAAATTCTACGATTTTATTATCATTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5706.1|RJNL01000002.1	CCTyper	direct_repeat	331751	331787	37	+	.	ID=SEQF5706.1|RJNL01000002.1-6_4_REPEAT4;Parent=SEQF5706.1|RJNL01000002.1-6_4;Note=GTTTCCGTCCCCTCCCGAGGTGACTGGGGGGTCTTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5706.1|RJNL01000002.1	CCTyper	OPERON	322345	334752	12408	-	.	ID=SEQF5706.1|RJNL01000002.1@6;Genome_ID=SEQF5706.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-A;Complete_Interference=100%;Complete_Adaptation=NA;Best_type=III-A;Best_score=18.0;Genes=Csm6_1_CAS-III,Csm5gr7_0_CAS-III-A-III-D,Csm4gr5_1_CAS-III-A,Csm3gr7_1_CAS-III-A-III-D,Csm2gr11_7_CAS-III-A,Cas10_1_CAS-III,Cas6_0_CAS-I-II-III-IV-V-VI,Cas2_2_CAS-I-II-III-IV-V-VI,Cas1_0_CAS-I-II-III-IV-V-VI,Cas1_0_CAS-I-II-III-IV-V-VI,Csm6_7_CAS-III;Positions=295,296,297,298,299,300,301,302,303,304,306;E-values=8.30e-43,7.30e-36,3.80e-40,2.20e-68,6.50e-19,2.50e-146,1.30e-26,5.10e-20,1.50e-47,1.60e-22,5.10e-17;CoverageSeq=0.743,0.745,0.977,0.835,0.526,0.787,0.755,0.624,0.917,0.872,0.898;CoverageHMM=0.883,0.737,0.975,0.967,0.827,0.919,0.876,0.848,0.521,0.385,0.509;Strand_Interference=-1;Strand_Adaptation=NA
SEQF5706.1|RJNL01000002.1	CCTyper	CDS	326929	329226	766	-	.	ID=SEQF5706.1|RJNL01000002.1_300_cas;Genome_ID=SEQF5706.1;Feature_type=CDS;Product=Cas Prediction : Cas10_1_CAS-III;coding_strand=-;E-value=2.5000000000000002e-146;Score=486.0;Coverage_Seq=0.7872062663185379;Coverage_Hmm=0.918960244648318
SEQF5706.1|RJNL01000002.1	CCTyper	CDS	332220	332762	181	-	.	ID=SEQF5706.1|RJNL01000002.1_303_cas;Genome_ID=SEQF5706.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.4999999999999998e-47;Score=159.4;Coverage_Seq=0.9171270718232044;Coverage_Hmm=0.5205047318611987
SEQF5706.1|RJNL01000002.1	CCTyper	CDS	332717	333139	141	-	.	ID=SEQF5706.1|RJNL01000002.1_304_cas;Genome_ID=SEQF5706.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.6000000000000002e-22;Score=77.1;Coverage_Seq=0.8723404255319149;Coverage_Hmm=0.38485804416403785
SEQF5706.1|RJNL01000002.1	CCTyper	CDS	331891	332217	109	-	.	ID=SEQF5706.1|RJNL01000002.1_302_cas;Genome_ID=SEQF5706.1;Feature_type=CDS;Product=Cas Prediction : Cas2_2_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=5.1e-20;Score=68.6;Coverage_Seq=0.6238532110091743;Coverage_Hmm=0.8481012658227848
SEQF5706.1|RJNL01000002.1	CCTyper	CDS	329207	329941	245	-	.	ID=SEQF5706.1|RJNL01000002.1_301_cas;Genome_ID=SEQF5706.1;Feature_type=CDS;Product=Cas Prediction : Cas6_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=1.3e-26;Score=91.4;Coverage_Seq=0.7551020408163265;Coverage_Hmm=0.8762886597938144
SEQF5706.1|RJNL01000002.1	CCTyper	CDS	326409	326927	173	-	.	ID=SEQF5706.1|RJNL01000002.1_299_cas;Genome_ID=SEQF5706.1;Feature_type=CDS;Product=Cas Prediction : Csm2gr11_7_CAS-III-A;coding_strand=-;E-value=6.5e-19;Score=66.1;Coverage_Seq=0.5260115606936416;Coverage_Hmm=0.8272727272727273
SEQF5706.1|RJNL01000002.1	CCTyper	CDS	325702	326412	237	-	.	ID=SEQF5706.1|RJNL01000002.1_298_cas;Genome_ID=SEQF5706.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_1_CAS-III-A-III-D;coding_strand=-;E-value=2.2e-68;Score=227.4;Coverage_Seq=0.8354430379746836;Coverage_Hmm=0.9674418604651163
SEQF5706.1|RJNL01000002.1	CCTyper	CDS	324782	325690	303	-	.	ID=SEQF5706.1|RJNL01000002.1_297_cas;Genome_ID=SEQF5706.1;Feature_type=CDS;Product=Cas Prediction : Csm4gr5_1_CAS-III-A;coding_strand=-;E-value=3.8e-40;Score=135.2;Coverage_Seq=0.976897689768977;Coverage_Hmm=0.9746031746031746
SEQF5706.1|RJNL01000002.1	CCTyper	CDS	323658	324785	376	-	.	ID=SEQF5706.1|RJNL01000002.1_296_cas;Genome_ID=SEQF5706.1;Feature_type=CDS;Product=Cas Prediction : Csm5gr7_0_CAS-III-A-III-D;coding_strand=-;E-value=7.3e-36;Score=121.3;Coverage_Seq=0.7446808510638298;Coverage_Hmm=0.736986301369863
SEQF5706.1|RJNL01000002.1	CCTyper	CDS	322345	323661	439	-	.	ID=SEQF5706.1|RJNL01000002.1_295_cas;Genome_ID=SEQF5706.1;Feature_type=CDS;Product=Cas Prediction : Csm6_1_CAS-III;coding_strand=-;E-value=8.3e-43;Score=143.8;Coverage_Seq=0.7425968109339408;Coverage_Hmm=0.8833333333333333
SEQF5706.1|RJNL01000002.1	CCTyper	CDS	334135	334752	206	-	.	ID=SEQF5706.1|RJNL01000002.1_306_cas;Genome_ID=SEQF5706.1;Feature_type=CDS;Product=Cas Prediction : Csm6_7_CAS-III;coding_strand=-;E-value=5.1e-17;Score=58.9;Coverage_Seq=0.8980582524271845;Coverage_Hmm=0.5093833780160858