SEQF5714.1|RJMN01000003.1	CCTyper	repeat_region	322568	323626	1059	+	.	ID=SEQF5714.1|RJMN01000003.1-6_1;Genome_ID=SEQF5714.1;Note=Predictor:CCtyper;Start:322568;End:323626;Consensus_Repeat:GTTTCCGTACCCTCTCGAGGTGATTGGGGTTTCTAAC;Number_of_Repeats:15;Repeat_Length:35.1;Average_Spacer_Length:38.1;Repeat_Identity:73.1;Spacer_Identity:42.4;Spacer_Length_Sem:1.3;Trusted:True;Cas_Type_Prediction: III-A;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.76;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5714.1|RJMN01000003.1	CCTyper	direct_repeat	322568	322604	37	+	.	ID=SEQF5714.1|RJMN01000003.1-6_1_REPEAT1;Parent=SEQF5714.1|RJMN01000003.1-6_1;Note=GTTTCCGTACCCTCTCGAGGTGATTGGGGTTTCTAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5714.1|RJMN01000003.1	CCTyper	binding_site	322605	322640	36	+	.	ID=SEQF5714.1|RJMN01000003.1-6_1_SPACER1;Parent=SEQF5714.1|RJMN01000003.1-6_1;Note=CGAGACAGTCAATGACCTAAATGATGATGTAGTCAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5714.1|RJMN01000003.1	CCTyper	direct_repeat	322641	322677	37	+	.	ID=SEQF5714.1|RJMN01000003.1-6_1_REPEAT2;Parent=SEQF5714.1|RJMN01000003.1-6_1;Note=GTTTCCGTACCCTCTCGAGGAGGCTGGGGTTTCTAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5714.1|RJMN01000003.1	CCTyper	binding_site	322678	322715	38	+	.	ID=SEQF5714.1|RJMN01000003.1-6_1_SPACER2;Parent=SEQF5714.1|RJMN01000003.1-6_1;Note=TTAAAGATTAAGTGAAGTTTTAGGTGCATCAAAAATAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5714.1|RJMN01000003.1	CCTyper	direct_repeat	322716	322752	37	+	.	ID=SEQF5714.1|RJMN01000003.1-6_1_REPEAT3;Parent=SEQF5714.1|RJMN01000003.1-6_1;Note=GTTTCCGTACCCTCTCGAGGTGATTGGAGGTTCTAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5714.1|RJMN01000003.1	CCTyper	binding_site	322753	322786	34	+	.	ID=SEQF5714.1|RJMN01000003.1-6_1_SPACER3;Parent=SEQF5714.1|RJMN01000003.1-6_1;Note=GCTGCTGATGATTTTGATAGAGTCATAGTTTTCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5714.1|RJMN01000003.1	CCTyper	direct_repeat	322787	322823	37	+	.	ID=SEQF5714.1|RJMN01000003.1-6_1_REPEAT4;Parent=SEQF5714.1|RJMN01000003.1-6_1;Note=GTTTCCGTCCCCTCGCGAGGTGATTGAGGGTTCTAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5714.1|RJMN01000003.1	CCTyper	binding_site	322824	322859	36	+	.	ID=SEQF5714.1|RJMN01000003.1-6_1_SPACER4;Parent=SEQF5714.1|RJMN01000003.1-6_1;Note=TGAAATCAAAGCAGCAATAAATAACACTAACTATTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5714.1|RJMN01000003.1	CCTyper	direct_repeat	322860	322896	37	+	.	ID=SEQF5714.1|RJMN01000003.1-6_1_REPEAT5;Parent=SEQF5714.1|RJMN01000003.1-6_1;Note=GTTTCCGTACCCTCACGAGCTGACTGGGGTTTCTAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5714.1|RJMN01000003.1	CCTyper	binding_site	322897	322930	34	+	.	ID=SEQF5714.1|RJMN01000003.1-6_1_SPACER5;Parent=SEQF5714.1|RJMN01000003.1-6_1;Note=TTTTTAATATTATCCGTAGTTATGGCGGTGGTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5714.1|RJMN01000003.1	CCTyper	direct_repeat	322931	322964	34	+	.	ID=SEQF5714.1|RJMN01000003.1-6_1_REPEAT6;Parent=SEQF5714.1|RJMN01000003.1-6_1;Note=GTTTTCGTCCCCTCACGAGGTGACTGGGGGGTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5714.1|RJMN01000003.1	CCTyper	binding_site	322965	323004	40	+	.	ID=SEQF5714.1|RJMN01000003.1-6_1_SPACER6;Parent=SEQF5714.1|RJMN01000003.1-6_1;Note=AACCCGAGTGGAAGCCTAAATATGTCATCTGGGAGAATGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5714.1|RJMN01000003.1	CCTyper	direct_repeat	323005	323041	37	+	.	ID=SEQF5714.1|RJMN01000003.1-6_1_REPEAT7;Parent=SEQF5714.1|RJMN01000003.1-6_1;Note=GTTTCCGTCCCCTATCGAGGTGATTGGGGTTTCTAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5714.1|RJMN01000003.1	CCTyper	binding_site	323042	323077	36	+	.	ID=SEQF5714.1|RJMN01000003.1-6_1_SPACER7;Parent=SEQF5714.1|RJMN01000003.1-6_1;Note=CGAACCTATAATGAAGTTATGTCATTTGGGAAAGCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5714.1|RJMN01000003.1	CCTyper	direct_repeat	323078	323114	37	+	.	ID=SEQF5714.1|RJMN01000003.1-6_1_REPEAT8;Parent=SEQF5714.1|RJMN01000003.1-6_1;Note=GTTTCCGTACCCTCTCGAGGTGATTGGGGTTTCTAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5714.1|RJMN01000003.1	CCTyper	binding_site	323115	323150	36	+	.	ID=SEQF5714.1|RJMN01000003.1-6_1_SPACER8;Parent=SEQF5714.1|RJMN01000003.1-6_1;Note=TGAATAATGTACAACTTATCGGTCGTCTGGCTAATG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5714.1|RJMN01000003.1	CCTyper	direct_repeat	323151	323179	29	+	.	ID=SEQF5714.1|RJMN01000003.1-6_1_REPEAT9;Parent=SEQF5714.1|RJMN01000003.1-6_1;Note=GTTTCCGTCCCCTCCCGAGGTGAATGGGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5714.1|RJMN01000003.1	CCTyper	binding_site	323180	323224	45	+	.	ID=SEQF5714.1|RJMN01000003.1-6_1_SPACER9;Parent=SEQF5714.1|RJMN01000003.1-6_1;Note=GTTATAACATGCTTGGACTGAACATGAAAGCCTCGTTATTAGCCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5714.1|RJMN01000003.1	CCTyper	direct_repeat	323225	323258	34	+	.	ID=SEQF5714.1|RJMN01000003.1-6_1_REPEAT10;Parent=SEQF5714.1|RJMN01000003.1-6_1;Note=GTTTCCGTCCCCTCTCGAGGTGACTGGGGTTTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5714.1|RJMN01000003.1	CCTyper	binding_site	323259	323298	40	+	.	ID=SEQF5714.1|RJMN01000003.1-6_1_SPACER10;Parent=SEQF5714.1|RJMN01000003.1-6_1;Note=TACAATTCAAACACCTGCTCTTCATAAAGAGCTAAATAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5714.1|RJMN01000003.1	CCTyper	direct_repeat	323299	323335	37	+	.	ID=SEQF5714.1|RJMN01000003.1-6_1_REPEAT11;Parent=SEQF5714.1|RJMN01000003.1-6_1;Note=GTTTCCGTCCCCTCTCGAGGTGACTGGGGGGTCTTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5714.1|RJMN01000003.1	CCTyper	binding_site	323336	323369	34	+	.	ID=SEQF5714.1|RJMN01000003.1-6_1_SPACER11;Parent=SEQF5714.1|RJMN01000003.1-6_1;Note=AGACAGGTCTTGCCATTGATATTTCGACTATTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5714.1|RJMN01000003.1	CCTyper	direct_repeat	323370	323391	22	+	.	ID=SEQF5714.1|RJMN01000003.1-6_1_REPEAT12;Parent=SEQF5714.1|RJMN01000003.1-6_1;Note=GTTTCCGTCCCCTCGCGGGGTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5714.1|RJMN01000003.1	CCTyper	binding_site	323392	323443	52	+	.	ID=SEQF5714.1|RJMN01000003.1-6_1_SPACER12;Parent=SEQF5714.1|RJMN01000003.1-6_1;Note=AATGGGGGATCTTACCCAAGAGCGCTGTTCAGGACAGTAAGCAGAACCTGAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5714.1|RJMN01000003.1	CCTyper	direct_repeat	323444	323480	37	+	.	ID=SEQF5714.1|RJMN01000003.1-6_1_REPEAT13;Parent=SEQF5714.1|RJMN01000003.1-6_1;Note=GTTTCCGTACCCTTGCGAGGTGACTGGGGTGTCTTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5714.1|RJMN01000003.1	CCTyper	binding_site	323481	323517	37	+	.	ID=SEQF5714.1|RJMN01000003.1-6_1_SPACER13;Parent=SEQF5714.1|RJMN01000003.1-6_1;Note=TTTTACAGGGACTAAAAAAGGCTATGAATGGTGGCGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5714.1|RJMN01000003.1	CCTyper	direct_repeat	323518	323554	37	+	.	ID=SEQF5714.1|RJMN01000003.1-6_1_REPEAT14;Parent=SEQF5714.1|RJMN01000003.1-6_1;Note=GTTTCCGTCCCCTCCCGAGGTGACTGGGGGGTCTTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5714.1|RJMN01000003.1	CCTyper	binding_site	323555	323589	35	+	.	ID=SEQF5714.1|RJMN01000003.1-6_1_SPACER14;Parent=SEQF5714.1|RJMN01000003.1-6_1;Note=TCATTACAATATGCAATGAATGGTATGGAGTTTGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5714.1|RJMN01000003.1	CCTyper	direct_repeat	323590	323626	37	+	.	ID=SEQF5714.1|RJMN01000003.1-6_1_REPEAT15;Parent=SEQF5714.1|RJMN01000003.1-6_1;Note=GTTTCCGTCCCCTCTCGAGGAGACTGGGGTTTCTAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5714.1|RJMN01000003.1	CCTyper	OPERON	314700	326672	11973	-	.	ID=SEQF5714.1|RJMN01000003.1@7;Genome_ID=SEQF5714.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-A;Complete_Interference=100%;Complete_Adaptation=NA;Best_type=III-A;Best_score=18.0;Genes=Csm6_1_CAS-III,Csm5gr7_0_CAS-III-A-III-D,Csm4gr5_1_CAS-III-A,Csm3gr7_1_CAS-III-A-III-D,Csm2gr11_7_CAS-III-A,Cas10_1_CAS-III,Cas6_0_CAS-I-II-III-IV-V-VI,Cas2_2_CAS-I-II-III-IV-V-VI,Cas1_0_CAS-I-II-III-IV-V-VI,Csm6_7_CAS-III;Positions=290,291,292,293,294,295,296,297,298,300;E-values=9.60e-43,6.90e-36,3.60e-40,2.10e-68,5.90e-19,2.20e-146,2.20e-26,8.30e-20,5.50e-79,2.20e-29;CoverageSeq=0.743,0.745,0.977,0.835,0.526,0.815,0.755,0.624,0.949,0.969;CoverageHMM=0.883,0.737,0.975,0.967,0.827,0.997,0.876,0.848,0.994,0.676;Strand_Interference=-1;Strand_Adaptation=NA
SEQF5714.1|RJMN01000003.1	CCTyper	CDS	319284	321581	766	-	.	ID=SEQF5714.1|RJMN01000003.1_295_cas;Genome_ID=SEQF5714.1;Feature_type=CDS;Product=Cas Prediction : Cas10_1_CAS-III;coding_strand=-;E-value=2.2e-146;Score=486.1;Coverage_Seq=0.814621409921671;Coverage_Hmm=0.9969418960244648
SEQF5714.1|RJMN01000003.1	CCTyper	CDS	324059	325060	334	-	.	ID=SEQF5714.1|RJMN01000003.1_298_cas;Genome_ID=SEQF5714.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=5.5e-79;Score=262.6;Coverage_Seq=0.9491017964071856;Coverage_Hmm=0.9936908517350158
SEQF5714.1|RJMN01000003.1	CCTyper	CDS	323730	324056	109	-	.	ID=SEQF5714.1|RJMN01000003.1_297_cas;Genome_ID=SEQF5714.1;Feature_type=CDS;Product=Cas Prediction : Cas2_2_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=8.3e-20;Score=67.9;Coverage_Seq=0.6238532110091743;Coverage_Hmm=0.8481012658227848
SEQF5714.1|RJMN01000003.1	CCTyper	CDS	321562	322296	245	-	.	ID=SEQF5714.1|RJMN01000003.1_296_cas;Genome_ID=SEQF5714.1;Feature_type=CDS;Product=Cas Prediction : Cas6_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=2.2e-26;Score=90.5;Coverage_Seq=0.7551020408163265;Coverage_Hmm=0.8762886597938144
SEQF5714.1|RJMN01000003.1	CCTyper	CDS	318764	319282	173	-	.	ID=SEQF5714.1|RJMN01000003.1_294_cas;Genome_ID=SEQF5714.1;Feature_type=CDS;Product=Cas Prediction : Csm2gr11_7_CAS-III-A;coding_strand=-;E-value=5.9e-19;Score=66.2;Coverage_Seq=0.5260115606936416;Coverage_Hmm=0.8272727272727273
SEQF5714.1|RJMN01000003.1	CCTyper	CDS	318057	318767	237	-	.	ID=SEQF5714.1|RJMN01000003.1_293_cas;Genome_ID=SEQF5714.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_1_CAS-III-A-III-D;coding_strand=-;E-value=2.0999999999999997e-68;Score=227.4;Coverage_Seq=0.8354430379746836;Coverage_Hmm=0.9674418604651163
SEQF5714.1|RJMN01000003.1	CCTyper	CDS	317137	318045	303	-	.	ID=SEQF5714.1|RJMN01000003.1_292_cas;Genome_ID=SEQF5714.1;Feature_type=CDS;Product=Cas Prediction : Csm4gr5_1_CAS-III-A;coding_strand=-;E-value=3.6e-40;Score=135.2;Coverage_Seq=0.976897689768977;Coverage_Hmm=0.9746031746031746
SEQF5714.1|RJMN01000003.1	CCTyper	CDS	316013	317140	376	-	.	ID=SEQF5714.1|RJMN01000003.1_291_cas;Genome_ID=SEQF5714.1;Feature_type=CDS;Product=Cas Prediction : Csm5gr7_0_CAS-III-A-III-D;coding_strand=-;E-value=6.9e-36;Score=121.3;Coverage_Seq=0.7446808510638298;Coverage_Hmm=0.736986301369863
SEQF5714.1|RJMN01000003.1	CCTyper	CDS	314700	316016	439	-	.	ID=SEQF5714.1|RJMN01000003.1_290_cas;Genome_ID=SEQF5714.1;Feature_type=CDS;Product=Cas Prediction : Csm6_1_CAS-III;coding_strand=-;E-value=9.599999999999999e-43;Score=143.5;Coverage_Seq=0.7425968109339408;Coverage_Hmm=0.8833333333333333
SEQF5714.1|RJMN01000003.1	CCTyper	CDS	325911	326672	254	-	.	ID=SEQF5714.1|RJMN01000003.1_300_cas;Genome_ID=SEQF5714.1;Feature_type=CDS;Product=Cas Prediction : Csm6_7_CAS-III;coding_strand=-;E-value=2.2e-29;Score=99.5;Coverage_Seq=0.968503937007874;Coverage_Hmm=0.675603217158177