SEQF5716.1|RJND01000002.1	CCTyper	repeat_region	322423	322751	329	+	.	ID=SEQF5716.1|RJND01000002.1-6_1;Genome_ID=SEQF5716.1;Note=Predictor:CCtyper;Start:322423;End:322751;Consensus_Repeat:GTTTCCGTACCCTCTCGAGGTGATTGGAGGTTCTAAC;Number_of_Repeats:5;Repeat_Length:37.0;Average_Spacer_Length:36.0;Repeat_Identity:82.9;Spacer_Identity:42.6;Spacer_Length_Sem:0.8;Trusted:True;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.525;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5716.1|RJND01000002.1	CCTyper	direct_repeat	322423	322459	37	+	.	ID=SEQF5716.1|RJND01000002.1-6_1_REPEAT1;Parent=SEQF5716.1|RJND01000002.1-6_1;Note=GTTTCCGTACCCTCTCGAGGTGATTGGGGTTTCTAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5716.1|RJND01000002.1	CCTyper	binding_site	322460	322495	36	+	.	ID=SEQF5716.1|RJND01000002.1-6_1_SPACER1;Parent=SEQF5716.1|RJND01000002.1-6_1;Note=CGAGACAGTCAATGACCTAAATGATGATGTAGTCAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5716.1|RJND01000002.1	CCTyper	direct_repeat	322496	322532	37	+	.	ID=SEQF5716.1|RJND01000002.1-6_1_REPEAT2;Parent=SEQF5716.1|RJND01000002.1-6_1;Note=GTTTCCGTACCCTCTCGAGGAGGCTGGGGTTTCTAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5716.1|RJND01000002.1	CCTyper	binding_site	322533	322570	38	+	.	ID=SEQF5716.1|RJND01000002.1-6_1_SPACER2;Parent=SEQF5716.1|RJND01000002.1-6_1;Note=TTAAAGATTAAGTGAAGTTTTAGGTGCATCAAAAATAT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5716.1|RJND01000002.1	CCTyper	direct_repeat	322571	322607	37	+	.	ID=SEQF5716.1|RJND01000002.1-6_1_REPEAT3;Parent=SEQF5716.1|RJND01000002.1-6_1;Note=GTTTCCGTACCCTCTCGAGGTGATTGGAGGTTCTAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5716.1|RJND01000002.1	CCTyper	binding_site	322608	322641	34	+	.	ID=SEQF5716.1|RJND01000002.1-6_1_SPACER3;Parent=SEQF5716.1|RJND01000002.1-6_1;Note=GCTGCTGATGATTTTGATAGAGTCATAGTTTTCG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5716.1|RJND01000002.1	CCTyper	direct_repeat	322642	322678	37	+	.	ID=SEQF5716.1|RJND01000002.1-6_1_REPEAT4;Parent=SEQF5716.1|RJND01000002.1-6_1;Note=GTTTCCGTCCCCTCGCGAGGTGATTGAGGGTTCTAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5716.1|RJND01000002.1	CCTyper	binding_site	322679	322714	36	+	.	ID=SEQF5716.1|RJND01000002.1-6_1_SPACER4;Parent=SEQF5716.1|RJND01000002.1-6_1;Note=TGAAATCAAAGCAGCAATAAATAACACTAACTATTC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5716.1|RJND01000002.1	CCTyper	direct_repeat	322715	322751	37	+	.	ID=SEQF5716.1|RJND01000002.1-6_1_REPEAT5;Parent=SEQF5716.1|RJND01000002.1-6_1;Note=GTTTCCGTACCCTCACGAGCTGACTGGGGTTTCTAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5716.1|RJND01000002.1	CCTyper	repeat_region	322860	323481	622	+	.	ID=SEQF5716.1|RJND01000002.1-6_2;Genome_ID=SEQF5716.1;Note=Predictor:CCtyper;Start:322860;End:323481;Consensus_Repeat:GTTTCCGTCCCCTCCCGAGGTGACTGGGGGGTCTTAC;Number_of_Repeats:9;Repeat_Length:34.1;Average_Spacer_Length:39.4;Repeat_Identity:73.1;Spacer_Identity:43.2;Spacer_Length_Sem:2.2;Trusted:True;Cas_Type_Prediction: Unknown;Cas_Subtype_Prediction:III-A;Subtype_Probability:0.583;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5716.1|RJND01000002.1	CCTyper	direct_repeat	322860	322896	37	+	.	ID=SEQF5716.1|RJND01000002.1-6_2_REPEAT1;Parent=SEQF5716.1|RJND01000002.1-6_2;Note=GTTTCCGTCCCCTATCGAGGTGATTGGGGTTTCTAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5716.1|RJND01000002.1	CCTyper	binding_site	322897	322932	36	+	.	ID=SEQF5716.1|RJND01000002.1-6_2_SPACER1;Parent=SEQF5716.1|RJND01000002.1-6_2;Note=CGAACCTATAATGAAGTTATGTCATTTGGGAAAGCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5716.1|RJND01000002.1	CCTyper	direct_repeat	322933	322969	37	+	.	ID=SEQF5716.1|RJND01000002.1-6_2_REPEAT2;Parent=SEQF5716.1|RJND01000002.1-6_2;Note=GTTTCCGTACCCTCTCGAGGTGATTGGGGTTTCTAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5716.1|RJND01000002.1	CCTyper	binding_site	322970	323005	36	+	.	ID=SEQF5716.1|RJND01000002.1-6_2_SPACER2;Parent=SEQF5716.1|RJND01000002.1-6_2;Note=TGAATAATGTACAACTTATCGGTCGTCTGGCTAATG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5716.1|RJND01000002.1	CCTyper	direct_repeat	323006	323034	29	+	.	ID=SEQF5716.1|RJND01000002.1-6_2_REPEAT3;Parent=SEQF5716.1|RJND01000002.1-6_2;Note=GTTTCCGTCCCCTCCCGAGGTGAATGGGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5716.1|RJND01000002.1	CCTyper	binding_site	323035	323079	45	+	.	ID=SEQF5716.1|RJND01000002.1-6_2_SPACER3;Parent=SEQF5716.1|RJND01000002.1-6_2;Note=GTTATAACATGCTTGGACTGAACATGAAAGCCTCGTTATTAGCCC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5716.1|RJND01000002.1	CCTyper	direct_repeat	323080	323113	34	+	.	ID=SEQF5716.1|RJND01000002.1-6_2_REPEAT4;Parent=SEQF5716.1|RJND01000002.1-6_2;Note=GTTTCCGTCCCCTCTCGAGGTGACTGGGGTTTCT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5716.1|RJND01000002.1	CCTyper	binding_site	323114	323153	40	+	.	ID=SEQF5716.1|RJND01000002.1-6_2_SPACER4;Parent=SEQF5716.1|RJND01000002.1-6_2;Note=TACAATTCAAACACCTGCTCTTCATAAAGAGCTAAATAAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5716.1|RJND01000002.1	CCTyper	direct_repeat	323154	323190	37	+	.	ID=SEQF5716.1|RJND01000002.1-6_2_REPEAT5;Parent=SEQF5716.1|RJND01000002.1-6_2;Note=GTTTCCGTCCCCTCTCGAGGTGACTGGGGGGTCTTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5716.1|RJND01000002.1	CCTyper	binding_site	323191	323224	34	+	.	ID=SEQF5716.1|RJND01000002.1-6_2_SPACER5;Parent=SEQF5716.1|RJND01000002.1-6_2;Note=AGACAGGTCTTGCCATTGATATTTCGACTATTGA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5716.1|RJND01000002.1	CCTyper	direct_repeat	323225	323246	22	+	.	ID=SEQF5716.1|RJND01000002.1-6_2_REPEAT6;Parent=SEQF5716.1|RJND01000002.1-6_2;Note=GTTTCCGTCCCCTCGCGGGGTG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5716.1|RJND01000002.1	CCTyper	binding_site	323247	323298	52	+	.	ID=SEQF5716.1|RJND01000002.1-6_2_SPACER6;Parent=SEQF5716.1|RJND01000002.1-6_2;Note=AATGGGGGATCTTACCCAAGAGCGCTGTTCAGGACAGTAAGCAGAACCTGAA;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5716.1|RJND01000002.1	CCTyper	direct_repeat	323299	323335	37	+	.	ID=SEQF5716.1|RJND01000002.1-6_2_REPEAT7;Parent=SEQF5716.1|RJND01000002.1-6_2;Note=GTTTCCGTACCCTTGCGAGGTGACTGGGGTGTCTTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5716.1|RJND01000002.1	CCTyper	binding_site	323336	323372	37	+	.	ID=SEQF5716.1|RJND01000002.1-6_2_SPACER7;Parent=SEQF5716.1|RJND01000002.1-6_2;Note=TTTTACAGGGACTAAAAAAGGCTATGAATGGTGGCGG;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5716.1|RJND01000002.1	CCTyper	direct_repeat	323373	323409	37	+	.	ID=SEQF5716.1|RJND01000002.1-6_2_REPEAT8;Parent=SEQF5716.1|RJND01000002.1-6_2;Note=GTTTCCGTCCCCTCCCGAGGTGACTGGGGGGTCTTAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5716.1|RJND01000002.1	CCTyper	binding_site	323410	323444	35	+	.	ID=SEQF5716.1|RJND01000002.1-6_2_SPACER8;Parent=SEQF5716.1|RJND01000002.1-6_2;Note=TCATTACAATATGCAATGAATGGTATGGAGTTTGT;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5716.1|RJND01000002.1	CCTyper	direct_repeat	323445	323481	37	+	.	ID=SEQF5716.1|RJND01000002.1-6_2_REPEAT9;Parent=SEQF5716.1|RJND01000002.1-6_2;Note=GTTTCCGTCCCCTCTCGAGGAGACTGGGGTTTCTAAC;Dbxref=SO:0001459;Ontology_term=CRISPR
SEQF5716.1|RJND01000002.1	CCTyper	OPERON	314555	326527	11973	-	.	ID=SEQF5716.1|RJND01000002.1@7;Genome_ID=SEQF5716.1;Product=Cas Operon;Feature_type=OPERON;Note=Cas Prediction: Type III-A;Complete_Interference=100%;Complete_Adaptation=NA;Best_type=III-A;Best_score=18.0;Genes=Csm6_1_CAS-III,Csm5gr7_0_CAS-III-A-III-D,Csm4gr5_1_CAS-III-A,Csm3gr7_1_CAS-III-A-III-D,Csm2gr11_7_CAS-III-A,Cas10_1_CAS-III,Cas6_0_CAS-I-II-III-IV-V-VI,Cas2_2_CAS-I-II-III-IV-V-VI,Cas1_0_CAS-I-II-III-IV-V-VI,Csm6_7_CAS-III;Positions=290,291,292,293,294,295,296,297,298,300;E-values=9.60e-43,7.20e-36,3.60e-40,2.10e-68,5.90e-19,2.20e-146,2.20e-26,8.30e-20,5.50e-79,2.20e-29;CoverageSeq=0.743,0.742,0.977,0.835,0.526,0.815,0.755,0.624,0.949,0.969;CoverageHMM=0.883,0.734,0.975,0.967,0.827,0.997,0.876,0.848,0.994,0.676;Strand_Interference=-1;Strand_Adaptation=NA
SEQF5716.1|RJND01000002.1	CCTyper	CDS	319139	321436	766	-	.	ID=SEQF5716.1|RJND01000002.1_295_cas;Genome_ID=SEQF5716.1;Feature_type=CDS;Product=Cas Prediction : Cas10_1_CAS-III;coding_strand=-;E-value=2.2e-146;Score=486.1;Coverage_Seq=0.814621409921671;Coverage_Hmm=0.9969418960244648
SEQF5716.1|RJND01000002.1	CCTyper	CDS	323914	324915	334	-	.	ID=SEQF5716.1|RJND01000002.1_298_cas;Genome_ID=SEQF5716.1;Feature_type=CDS;Product=Cas Prediction : Cas1_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=5.5e-79;Score=262.6;Coverage_Seq=0.9491017964071856;Coverage_Hmm=0.9936908517350158
SEQF5716.1|RJND01000002.1	CCTyper	CDS	323585	323911	109	-	.	ID=SEQF5716.1|RJND01000002.1_297_cas;Genome_ID=SEQF5716.1;Feature_type=CDS;Product=Cas Prediction : Cas2_2_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=8.3e-20;Score=67.9;Coverage_Seq=0.6238532110091743;Coverage_Hmm=0.8481012658227848
SEQF5716.1|RJND01000002.1	CCTyper	CDS	321417	322151	245	-	.	ID=SEQF5716.1|RJND01000002.1_296_cas;Genome_ID=SEQF5716.1;Feature_type=CDS;Product=Cas Prediction : Cas6_0_CAS-I-II-III-IV-V-VI;coding_strand=-;E-value=2.2e-26;Score=90.5;Coverage_Seq=0.7551020408163265;Coverage_Hmm=0.8762886597938144
SEQF5716.1|RJND01000002.1	CCTyper	CDS	318619	319137	173	-	.	ID=SEQF5716.1|RJND01000002.1_294_cas;Genome_ID=SEQF5716.1;Feature_type=CDS;Product=Cas Prediction : Csm2gr11_7_CAS-III-A;coding_strand=-;E-value=5.9e-19;Score=66.2;Coverage_Seq=0.5260115606936416;Coverage_Hmm=0.8272727272727273
SEQF5716.1|RJND01000002.1	CCTyper	CDS	317912	318622	237	-	.	ID=SEQF5716.1|RJND01000002.1_293_cas;Genome_ID=SEQF5716.1;Feature_type=CDS;Product=Cas Prediction : Csm3gr7_1_CAS-III-A-III-D;coding_strand=-;E-value=2.0999999999999997e-68;Score=227.4;Coverage_Seq=0.8354430379746836;Coverage_Hmm=0.9674418604651163
SEQF5716.1|RJND01000002.1	CCTyper	CDS	316992	317900	303	-	.	ID=SEQF5716.1|RJND01000002.1_292_cas;Genome_ID=SEQF5716.1;Feature_type=CDS;Product=Cas Prediction : Csm4gr5_1_CAS-III-A;coding_strand=-;E-value=3.6e-40;Score=135.2;Coverage_Seq=0.976897689768977;Coverage_Hmm=0.9746031746031746
SEQF5716.1|RJND01000002.1	CCTyper	CDS	315868	316995	376	-	.	ID=SEQF5716.1|RJND01000002.1_291_cas;Genome_ID=SEQF5716.1;Feature_type=CDS;Product=Cas Prediction : Csm5gr7_0_CAS-III-A-III-D;coding_strand=-;E-value=7.2e-36;Score=121.2;Coverage_Seq=0.7420212765957447;Coverage_Hmm=0.7342465753424657
SEQF5716.1|RJND01000002.1	CCTyper	CDS	314555	315871	439	-	.	ID=SEQF5716.1|RJND01000002.1_290_cas;Genome_ID=SEQF5716.1;Feature_type=CDS;Product=Cas Prediction : Csm6_1_CAS-III;coding_strand=-;E-value=9.599999999999999e-43;Score=143.5;Coverage_Seq=0.7425968109339408;Coverage_Hmm=0.8833333333333333
SEQF5716.1|RJND01000002.1	CCTyper	CDS	325766	326527	254	-	.	ID=SEQF5716.1|RJND01000002.1_300_cas;Genome_ID=SEQF5716.1;Feature_type=CDS;Product=Cas Prediction : Csm6_7_CAS-III;coding_strand=-;E-value=2.2e-29;Score=99.5;Coverage_Seq=0.968503937007874;Coverage_Hmm=0.675603217158177